Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11939 Brassica carinata HOM05D004100 ORTHO05D004781 4.6e-25 117.1 59 100.0
BcaB02g09230 Brassica carinata HOM05D004100 ORTHO05D004781 1.4e-16 89.0 48 87.5
BraA05t19768Z Brassica rapa HOM05D004100 ORTHO05D004781 1.4e-16 89.0 48 87.5
Aa31sc250G10 Aethionema arabicum HOM05D004100 ORTHO05D004781 1.1e-15 85.9 48 83.3
AL4G34950 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 1.1e-15 85.9 48 83.3
AT2G37975 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 1.1e-15 85.9 48 83.3
BcaB01g03736 Brassica carinata HOM05D000076 ORTHO05D001377 1.1e-15 85.9 48 83.3
A04p29120 Brassica napus HOM05D004100 ORTHO05D004781 1.1e-15 85.9 48 83.3
BolC3t14861H Brassica oleracea HOM05D000076 ORTHO05D001377 1.1e-15 85.9 48 83.3
BolC4t28139H Brassica oleracea HOM05D000076 ORTHO05D001377 1.1e-15 85.9 48 83.3
BraA03t11338Z Brassica rapa HOM05D000076 ORTHO05D001377 1.1e-15 85.9 48 83.3
BraA04t18382Z Brassica rapa HOM05D000076 ORTHO05D001377 1.1e-15 85.9 48 83.3
Carub.0004s1994 Capsella rubella HOM05D004100 ORTHO05D004781 1.1e-15 85.9 48 83.3
CARHR132530 Cardamine hirsuta HOM05D004100 ORTHO05D004781 1.1e-15 85.9 48 83.3
Thhalv10017760m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 1.1e-15 85.9 48 83.3
Sp4g20290 Schrenkiella parvula HOM05D004100 ORTHO05D004781 1.1e-15 85.9 48 83.3
CARHR150630 Cardamine hirsuta HOM05D004100 ORTHO05D004781 1.5e-15 85.5 41 95.1
Carub.0005s2067 Capsella rubella HOM05D004100 ORTHO05D004781 5.7e-15 83.6 48 79.2
CARHR163970 Cardamine hirsuta HOM05D004100 ORTHO05D004781 1.3e-14 82.4 48 77.1
Aa31sc516G30 Aethionema arabicum HOM05D004100 ORTHO05D004781 1.7e-14 82.0 48 79.2
AL5G35090 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 2.8e-14 81.3 48 77.1
AT3G54085 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 1.8e-13 78.6 48 75.0
THA.LOC104805700 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 3.1e-13 77.8 48 81.2
A09p47070 Brassica napus HOM05D004100 ORTHO05D004781 4.1e-13 77.4 48 72.9
Thhalv10010931m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 6.9e-13 76.6 48 72.9
C08p29320 Brassica napus HOM05D004100 ORTHO05D004781 1.5e-12 75.5 48 70.8
CANSAT35G1936 Cannabis sativa HOM05D004100 ORTHO05D004781 2.6e-12 74.7 48 72.9
Duzib093G2045 Durio zibethinus HOM05D004100 ORTHO05D004781 1.0e-11 72.8 48 75.0
Manes.08G084000 Manihot esculenta HOM05D004100 ORTHO05D004781 1.3e-11 72.4 48 75.0
Duzib128G0469 Durio zibethinus HOM05D004100 ORTHO05D004781 2.2e-11 71.6 48 72.9
Gorai.012G110700 Gossypium raimondii HOM05D004100 ORTHO05D004781 3.8e-11 70.9 43 76.7
TWI53G1956 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 3.8e-11 70.9 36 91.7
TWI74G1404 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 3.8e-11 70.9 36 91.7
Medtr4g019160 Medicago truncatula HOM05D004100 ORTHO05D004781 6.5e-11 70.1 36 88.9
THA.LOC104816861 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 6.5e-11 70.1 43 69.8
TPR.G8216 Trifolium pratense HOM05D004100 ORTHO05D004781 6.5e-11 70.1 36 88.9
Atru.chr8.2126 Acer truncatum HOM05D004100 ORTHO05D004781 8.5e-11 69.7 48 70.8
Potri.016G109500 Populus trichocarpa HOM05D004100 ORTHO05D004781 8.5e-11 69.7 36 86.1
Ciclev10013247m.g Citrus clementina HOM05D004100 ORTHO05D004781 1.1e-10 69.3 43 74.4
Thecc.05G024300 Theobroma cacao HOM05D004100 ORTHO05D004781 1.1e-10 69.3 48 72.9
Glyma.01G109600 Glycine max HOM05D004100 ORTHO05D004781 1.9e-10 68.6 36 86.1
Glyma.03G074700 Glycine max HOM05D004100 ORTHO05D004781 1.9e-10 68.6 36 86.1
Gohir.D04G127700 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.9e-10 68.6 43 79.1
ClCG10G021700 Citrullus lanatus HOM05D004100 ORTHO05D004781 2.5e-10 68.2 43 72.1
Gohir.A04G087300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 3.2e-10 67.8 43 74.4
RcHm_v2.0_Chr3g0464081 Rosa chinensis HOM05D004100 ORTHO05D004781 3.2e-10 67.8 43 67.4
CiPaw.10G153500 Carya illinoinensis HOM05D004100 ORTHO05D004781 4.2e-10 67.4 43 72.1
Phvul.010G006600 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 4.2e-10 67.4 36 80.6
FvH4_6g12280 Fragaria vesca HOM05D004100 ORTHO05D004781 9.4e-10 66.2 43 65.1
FAN09G3480 Fragaria x ananassa HOM05D004100 ORTHO05D004781 9.4e-10 66.2 43 65.1
Sabra16G0106200 Salix brachista HOM05D004100 ORTHO05D004781 9.4e-10 66.2 36 77.8
Nn6g33749 Nelumbo nucifera HOM05D004100 ORTHO05D004781 1.6e-09 65.5 36 80.6
Sc11g0006410 Simmondsia chinensis HOM05D004100 ORTHO05D004781 1.6e-09 65.5 35 82.9
Nn2g11332 Nelumbo nucifera HOM05D004100 ORTHO05D004781 2.1e-09 65.1 43 67.4
Cfa017271 Carpinus fangiana HOM05D004100 ORTHO05D004781 2.7e-09 64.7 38 73.7
Hma1.2p1_0026F.1_g016830 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 2.7e-09 64.7 35 82.9
Os09g0326850 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 2.7e-09 64.7 48 60.4
QL07p036366 Quercus lobata HOM05D004100 ORTHO05D004781 2.7e-09 64.7 43 67.4
Thecc.10G028200 Theobroma cacao HOM05D004100 ORTHO05D004781 2.7e-09 64.7 35 80.0
GSVIVG01013495001 Vitis vinifera HOM05D004100 ORTHO05D004781 2.7e-09 64.7 35 80.0
AL1G35910 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 4.7e-09 63.9 57 63.2
CiPaw.09G204500 Carya illinoinensis HOM05D004100 ORTHO05D004781 4.7e-09 63.9 43 67.4
FvH4_7g23790 Fragaria vesca HOM05D004100 ORTHO05D004781 4.7e-09 63.9 35 80.0
FAN01G2433 Fragaria x ananassa HOM05D004100 ORTHO05D004781 4.7e-09 63.9 35 80.0
FAN03G0295 Fragaria x ananassa HOM05D004100 ORTHO05D004781 4.7e-09 63.9 35 80.0
PSO384G2084 Papaver somniferum HOM05D004100 ORTHO05D004781 4.7e-09 63.9 36 77.8
PSO585G0025 Papaver somniferum HOM05D004100 ORTHO05D004781 4.7e-09 63.9 36 77.8
RcHm_v2.0_Chr1g0369131 Rosa chinensis HOM05D004100 ORTHO05D004781 4.7e-09 63.9 35 80.0
Eucgr.E00256 Eucalyptus grandis HOM05D004100 ORTHO05D004781 6.1e-09 63.5 35 82.9
Manes.10G019000 Manihot esculenta HOM05D004100 ORTHO05D004781 6.1e-09 63.5 36 77.8
GSVIVG01016389001 Vitis vinifera HOM05D004100 ORTHO05D004781 6.1e-09 63.5 35 80.0
arahy.Tifrunner.gnm1.ann1.0IJH0T Arachis hypogaea HOM05D004100 ORTHO05D087279 7.9e-09 63.2 35 80.0
arahy.Tifrunner.gnm1.ann1.YUBK9J Arachis hypogaea HOM05D004100 ORTHO05D004781 7.9e-09 63.2 35 80.0
CiPaw.01G294400 Carya illinoinensis HOM05D004100 ORTHO05D004781 7.9e-09 63.2 45 68.9
CiPaw.02G189000 Carya illinoinensis HOM05D004100 ORTHO05D004781 7.9e-09 63.2 45 68.9
Ciclev10010082m.g Citrus clementina HOM05D004100 ORTHO05D004781 7.9e-09 63.2 35 77.1
COL.COLO4_25607 Corchorus olitorius HOM05D004100 ORTHO05D004781 7.9e-09 63.2 35 77.1
Duzib114G0906 Durio zibethinus HOM05D004100 ORTHO05D004781 7.9e-09 63.2 35 77.1
Migut.F01567 Erythranthe guttata HOM05D004100 ORTHO05D004781 7.9e-09 63.2 35 80.0
Eucgr.G03237 Eucalyptus grandis HOM05D004100 ORTHO05D004781 7.9e-09 63.2 35 80.0
Gohir.D04G065900 Gossypium hirsutum HOM05D004100 ORTHO05D004781 7.9e-09 63.2 35 77.1
Gorai.012G074300 Gossypium raimondii HOM05D004100 ORTHO05D004781 7.9e-09 63.2 35 77.1
Hma1.2p1_0026F.1_g016860 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 7.9e-09 63.2 35 80.0
Phvul.008G227500 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 7.9e-09 63.2 35 80.0
Ah.10g030410 Amaranthus hybridus HOM05D004100 ORTHO05D004781 1.0e-08 62.8 35 82.9
Aqoxy2G00841 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 1.0e-08 62.8 36 77.8
DCAR_027562 Daucus carota HOM05D004100 ORTHO05D004781 1.0e-08 62.8 35 80.0
ECA238G3287 Erigeron canadensis HOM05D004100 ORTHO05D004781 1.0e-08 62.8 35 80.0
ECA247G3878 Erigeron canadensis HOM05D001920 ORTHO05D004895 1.0e-08 62.8 35 80.0
Gohir.A05G346300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.0e-08 62.8 35 77.1
HanXRQChr07g0202251 Helianthus annuus HOM05D004100 ORTHO05D004781 1.0e-08 62.8 35 80.0
Lsat_1_v5_gn_1_35860 Lactuca sativa HOM05D004100 ORTHO05D004781 1.0e-08 62.8 35 80.0
Os03g0331900 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 1.0e-08 62.8 48 58.3
Prupe.6G268700 Prunus persica HOM05D004100 ORTHO05D004781 1.0e-08 62.8 43 67.4
SalBow1G1269 Salvia bowleyana HOM05D004100 ORTHO05D004781 1.0e-08 62.8 35 80.0
SalBow6G6247 Salvia bowleyana HOM05D004100 ORTHO05D004781 1.0e-08 62.8 35 80.0
Sed0001470 Sechium edule HOM05D004100 ORTHO05D004781 1.0e-08 62.8 43 65.1
Solyc08g082695.1 Solanum lycopersicum HOM05D004100 ORTHO05D004781 1.0e-08 62.8 35 80.0
Sopen08g030920 Solanum pennellii HOM05D004100 ORTHO05D004781 1.0e-08 62.8 35 80.0
TAR369G1064 Trochodendron aralioides HOM05D004100 ORTHO05D004781 1.0e-08 62.8 36 75.0
TAR623G1136 Trochodendron aralioides HOM05D004100 ORTHO05D004781 1.0e-08 62.8 36 75.0
Aqoxy6G01946 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 1.4e-08 62.4 49 65.3
Manes.07G124300 Manihot esculenta HOM05D004100 ORTHO05D004781 1.4e-08 62.4 43 65.1
Potri.008G063000 Populus trichocarpa HOM05D004100 ORTHO05D004781 1.4e-08 62.4 35 77.1
Potri.010G194400 Populus trichocarpa HOM05D004100 ORTHO05D004781 1.4e-08 62.4 35 77.1
Sabra10G0149500 Salix brachista HOM05D004100 ORTHO05D004781 1.4e-08 62.4 35 77.1
Sed0020785 Sechium edule HOM05D004100 ORTHO05D004781 1.4e-08 62.4 35 77.1
HPP92_003287 Vanilla planifolia HOM05D004100 ORTHO05D004781 1.4e-08 62.4 41 68.3
CSS0048931 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 1.8e-08 62.0 35 77.1
MD04G1144200 Malus domestica HOM05D004100 ORTHO05D004781 1.8e-08 62.0 48 62.5
Medtr5g081650 Medicago truncatula HOM05D004100 ORTHO05D004781 1.8e-08 62.0 35 77.1
PGR031G0718 Punica granatum HOM05D004100 ORTHO05D004781 1.8e-08 62.0 36 77.8
TPR.G8047 Trifolium pratense HOM05D004100 ORTHO05D004781 1.8e-08 62.0 35 77.1
CSS0037675 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 2.3e-08 61.6 45 64.4
Ca_05921_v3 Cicer arietinum L. HOM05D004100 ORTHO05D004781 2.3e-08 61.6 35 77.1
Glyma.02G253300 Glycine max HOM05D004100 ORTHO05D004781 2.3e-08 61.6 35 77.1
Glyma.14G063100 Glycine max HOM05D004100 ORTHO05D004781 2.3e-08 61.6 35 77.1
Gohir.D13G018200 Gossypium hirsutum HOM05D004100 ORTHO05D004781 2.3e-08 61.6 48 60.4
Lalb_Chr18g0052831 Lupinus albus HOM05D004100 ORTHO05D004781 2.3e-08 61.6 35 77.1
Cc02_g07040 Coffea canephora HOM05D004100 ORTHO05D004781 3.0e-08 61.2 35 77.1
Glyma.11G226100 Glycine max HOM05D004100 ORTHO05D004781 3.0e-08 61.2 31 87.1
Glyma.18G031200 Glycine max HOM05D004100 ORTHO05D004781 3.0e-08 61.2 31 87.1
Lalb_Chr15g0084391 Lupinus albus HOM05D004100 ORTHO05D004781 3.0e-08 61.2 35 77.1
Psat2g035960 Pisum sativum HOM05D004100 ORTHO05D004781 3.0e-08 61.2 35 74.3
arahy.Tifrunner.gnm1.ann1.0J6FIX Arachis hypogaea HOM05D004100 ORTHO05D004781 3.9e-08 60.8 35 74.3
arahy.Tifrunner.gnm1.ann1.7Y0XMR Arachis hypogaea HOM05D004100 ORTHO05D004781 3.9e-08 60.8 35 74.3
MSTRG.234 Avicennia marina HOM05D004100 ORTHO05D004781 3.9e-08 60.8 35 77.1
BcaNung06516 Brassica carinata HOM05D004100 ORTHO05D004781 3.9e-08 60.8 29 96.6
MELO3C009201.2 Cucumis melo HOM05D004100 ORTHO05D004781 3.9e-08 60.8 43 62.8
LjContig00141g0009471 Lotus japonicus HOM05D004100 ORTHO05D004781 3.9e-08 60.8 35 71.4
Actinidia07713 Actinidia chinensis HOM05D004100 ORTHO05D004781 5.1e-08 60.5 35 74.3
Actinidia13907 Actinidia chinensis HOM05D004100 ORTHO05D004781 5.1e-08 60.5 35 74.3
Actinidia27826 Actinidia chinensis HOM05D004100 ORTHO05D004781 5.1e-08 60.5 35 74.3
Ah.02g116480 Amaranthus hybridus HOM05D004100 ORTHO05D004781 5.1e-08 60.5 30 93.3
Ah.12g057400 Amaranthus hybridus HOM05D004100 ORTHO05D004781 5.1e-08 60.5 30 93.3
CAN.G567.29 Capsicum annuum HOM05D004100 ORTHO05D004781 5.1e-08 60.5 35 77.1
Lalb_Chr04g0250821 Lupinus albus HOM05D004100 ORTHO05D004781 5.1e-08 60.5 35 74.3
Psat7g242160 Pisum sativum HOM05D004100 ORTHO05D004781 5.1e-08 60.5 40 72.5
Prupe.2G244600 Prunus persica HOM05D004100 ORTHO05D004781 5.1e-08 60.5 35 80.0
Rhsim09G0171200 Rhododendron simsii HOM05D004100 ORTHO05D004781 5.1e-08 60.5 35 74.3
vmacro10075 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 5.1e-08 60.5 35 74.3
vmacro16617 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 5.1e-08 60.5 35 74.3
CDE05G3529 Ceratophyllum demersum HOM05D004100 ORTHO05D004781 6.7e-08 60.1 35 74.3
Gohir.A13G017100 Gossypium hirsutum HOM05D004100 ORTHO05D004781 6.7e-08 60.1 48 58.3
MD12G1158300 Malus domestica HOM05D004100 ORTHO05D004781 6.7e-08 60.1 48 60.4
Oeu055822.1 Olea europaea HOM05D004100 ORTHO05D004781 6.7e-08 60.1 35 77.1
TWI63G1110 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 6.7e-08 60.1 45 64.4
Migut.I01038 Erythranthe guttata HOM05D004100 ORTHO05D004781 8.8e-08 59.7 43 65.1
Phvul.001G239400 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 8.8e-08 59.7 35 74.3
PGR044G2436 Punica granatum HOM05D004100 ORTHO05D004781 8.8e-08 59.7 35 74.3
unitig_0.g234 Utricularia gibba HOM05D004100 ORTHO05D004781 8.8e-08 59.7 35 74.3
arahy.Tifrunner.gnm1.ann1.97IM7W Arachis hypogaea HOM05D004100 ORTHO05D004781 1.1e-07 59.3 35 74.3
Gorai.013G020200 Gossypium raimondii HOM05D004100 ORTHO05D004781 1.5e-07 58.9 48 58.3
CSS0011416 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 2.0e-07 58.5 45 62.2
CSS0039007 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 2.0e-07 58.5 45 62.2
Lj6g0000528 Lotus japonicus HOM05D004100 ORTHO05D004781 2.0e-07 58.5 36 69.4
Nn2g13575 Nelumbo nucifera HOM05D004100 ORTHO05D004781 2.0e-07 58.5 43 58.1
Sed0010532 Sechium edule HOM05D004100 ORTHO05D004781 2.0e-07 58.5 43 62.8
ClCG11G006500 Citrullus lanatus HOM05D004100 ORTHO05D004781 2.6e-07 58.2 35 77.1
Duzib128G1203 Durio zibethinus HOM05D004100 ORTHO05D004781 2.6e-07 58.2 35 74.3
CAN.G689.7 Capsicum annuum HOM05D004100 ORTHO05D004781 3.3e-07 57.8 35 68.6
Rhsim03G0139100 Rhododendron simsii HOM05D004100 ORTHO05D004781 7.4e-07 56.6 35 71.4
Prupe.6G268600 Prunus persica HOM05D004100 ORTHO05D004781 1.3e-06 55.8 42 64.3
Sed0017691 Sechium edule HOM05D004100 ORTHO05D004781 2.2e-06 55.1 45 64.4


User provided reference genes

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