Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11915 Brassica carinata HOM05D004613 ORTHO05D014940 4.3e-46 187.6 91 100.0
BcaC02g11089 Brassica carinata HOM05D000249 ORTHO05D032228 4.3e-30 134.4 93 74.2
BcaNung04365 Brassica carinata HOM05D004613 ORTHO05D006095 2.5e-14 82.0 40 90.0
C04p20620 Brassica napus HOM05D000249 ORTHO05D032228 2.5e-14 82.0 39 89.7
BraA06t25731Z Brassica rapa HOM05D030286 ORTHO05D014940 4.3e-14 81.3 74 58.1
BolC7t44599H Brassica oleracea HOM05D004613 ORTHO05D006095 1.1e-12 76.6 40 85.0
BcaB02g10346 Brassica carinata HOM05D004613 ORTHO05D014940 1.4e-12 76.3 39 84.6
BcaC03g15600 Brassica carinata HOM05D008340 ORTHO05D014940 1.4e-12 76.3 42 81.0
BcaNung02466 Brassica carinata HOM05D004613 ORTHO05D006095 1.4e-12 76.3 40 85.0
A06p37600 Brassica napus HOM05D004613 ORTHO05D006095 1.4e-12 76.3 40 85.0
C07p40710 Brassica napus HOM05D004613 ORTHO05D006095 1.4e-12 76.3 40 85.0
BraA06t26679Z Brassica rapa HOM05D004613 ORTHO05D006095 1.4e-12 76.3 40 85.0
BolC2t08054H Brassica oleracea HOM05D004613 ORTHO05D014940 1.8e-12 75.9 39 82.1
Sp2g20610 Schrenkiella parvula HOM05D004613 ORTHO05D006095 4.1e-12 74.7 40 82.5
BcaB04g19666 Brassica carinata HOM05D004613 ORTHO05D006095 5.3e-12 74.3 82 48.8
BcaC04g20970 Brassica carinata HOM05D004613 ORTHO05D014940 5.3e-12 74.3 42 81.0
C08p07130 Brassica napus HOM05D004613 ORTHO05D014940 5.3e-12 74.3 39 87.2
BolC9t56574H Brassica oleracea HOM05D004613 ORTHO05D014940 9.1e-12 73.6 39 84.6
BcaB01g02118 Brassica carinata HOM05D004613 ORTHO05D014940 1.7e-10 69.3 42 73.8
Thhalv10004565m.g Eutrema salsugineum HOM05D004613 ORTHO05D006095 8.5e-10 67.0 50 62.0
A09p36030 Brassica napus HOM05D030286 ORTHO05D014940 1.9e-09 65.9 66 60.6
BolC4t22607H Brassica oleracea HOM05D030286 ORTHO05D014940 4.7e-08 61.2 56 60.7
Rhsim07G0179300 Rhododendron simsii HOM05D004613 ORTHO05D006095 2.0e-06 55.8 43 62.8
AL6G39630 Arabidopsis lyrata HOM05D004613 ORTHO05D006095 2.6e-06 55.5 28 82.1
AT5G27395 Arabidopsis thaliana HOM05D004613 ORTHO05D006095 2.6e-06 55.5 28 82.1
Carub.0006s2516 Capsella rubella HOM05D004613 ORTHO05D006095 2.6e-06 55.5 28 82.1
CARHR185980 Cardamine hirsuta HOM05D004613 ORTHO05D006095 2.6e-06 55.5 28 82.1
SHI18214 Sapria himalayana HOM05D004613 ORTHO05D006095 3.3e-06 55.1 44 54.5
EL10Ac4g09300 Beta vulgaris HOM05D004613 ORTHO05D006095 4.4e-06 54.7 42 61.9
Lj9A681T39 Lonicera japonica HOM05D004613 ORTHO05D006095 4.4e-06 54.7 28 75.0
Haze_04249 Corylus avellana HOM05D004613 ORTHO05D006095 5.7e-06 54.3 46 58.7
THA.LOC104818675 Tarenaya hassleriana HOM05D004613 ORTHO05D006095 5.7e-06 54.3 28 75.0
CSS0015750 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 7.4e-06 53.9 44 56.8
Lalb_Chr02g0148411 Lupinus albus HOM05D004613 ORTHO05D006095 7.4e-06 53.9 42 64.3
Thecc.05G300000 Theobroma cacao HOM05D004613 ORTHO05D006095 7.4e-06 53.9 43 62.8
vmacro05035 Vaccinium macrocarpon HOM05D004613 ORTHO05D006095 7.4e-06 53.9 43 62.8
AUR62000861 Chenopodium quinoa HOM05D004613 ORTHO05D006095 9.7e-06 53.5 30 76.7


User provided reference genes

Program Settings