Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11914 Brassica carinata HOM05D005476 ORTHO05D032808 4.0e-81 304.7 150 100.0
BolC4t22609H Brassica oleracea HOM05D005476 ORTHO05D032808 2.2e-47 192.6 126 79.4
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 7.1e-22 107.8 67 82.1
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 1.6e-21 106.7 67 80.6
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 1.6e-21 106.7 67 80.6
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 3.5e-21 105.5 67 80.6
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 1.8e-20 103.2 67 82.1
BcaC05g28396 Brassica carinata HOM05D006275 ORTHO05D003437 3.9e-20 102.1 56 85.7
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 3.9e-20 102.1 67 76.1
C02p58440 Brassica napus HOM05D001393 ORTHO05D032808 5.1e-20 101.7 57 84.2
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 5.1e-20 101.7 67 77.6
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 8.7e-20 100.9 67 80.6
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 1.1e-19 100.5 67 82.1
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 3.3e-19 99.0 67 80.6
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 5.7e-19 98.2 67 80.6
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 2.8e-18 95.9 67 74.6
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 3.7e-18 95.5 118 52.5
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 7.9e-13 77.8 67 65.7
BcaB01g04637 Brassica carinata HOM05D005476 ORTHO05D021669 6.3e-10 68.2 57 63.2
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 5.3e-09 65.1 48 68.8
C06p13630 Brassica napus HOM05D001335 ORTHO05D001184 6.9e-09 64.7 49 63.3
BolC6t36528H Brassica oleracea HOM05D001335 ORTHO05D001184 6.9e-09 64.7 49 63.3
BcaC08g43962 Brassica carinata HOM05D001335 ORTHO05D001184 9.1e-09 64.3 34 85.3
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 2.0e-08 63.2 61 55.7
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 2.0e-08 63.2 54 61.1
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 2.6e-08 62.8 48 66.7
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 2.6e-08 62.8 48 66.7
BcaC09g50768 Brassica carinata HOM05D001335 ORTHO05D001184 3.4e-08 62.4 32 87.5
BcaNung03696 Brassica carinata HOM05D001335 ORTHO05D001184 3.4e-08 62.4 40 75.0
A01p16750 Brassica napus HOM05D001335 ORTHO05D001184 3.4e-08 62.4 32 87.5
C01p21050 Brassica napus HOM05D001335 ORTHO05D001184 3.4e-08 62.4 32 87.5
BolC1t02029H Brassica oleracea HOM05D001335 ORTHO05D001184 3.4e-08 62.4 32 87.5
BraA01t01628Z Brassica rapa HOM05D001335 ORTHO05D001184 3.4e-08 62.4 32 87.5
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 3.4e-08 62.4 59 57.6
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 5.9e-08 61.6 64 60.9
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 5.9e-08 61.6 64 60.9
AT4G25440 Arabidopsis thaliana HOM05D001335 ORTHO05D001184 7.7e-08 61.2 40 72.5
CARHR232870 Cardamine hirsuta HOM05D001335 ORTHO05D001184 7.7e-08 61.2 40 72.5
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 7.7e-08 61.2 62 61.3
Sp7g23490 Schrenkiella parvula HOM05D001335 ORTHO05D001184 7.7e-08 61.2 40 72.5
AL7G27650 Arabidopsis lyrata HOM05D001335 ORTHO05D001184 1.0e-07 60.8 40 70.0
Thhalv10025269m.g Eutrema salsugineum HOM05D001335 ORTHO05D001184 1.3e-07 60.5 40 72.5
Carub.0007s1554 Capsella rubella HOM05D001335 ORTHO05D001184 1.7e-07 60.1 40 72.5
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.7e-07 60.1 47 61.7
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 2.2e-07 59.7 48 58.3
Lj2g0003257 Lotus japonicus HOM05D001335 ORTHO05D001184 2.2e-07 59.7 32 81.2
SGA_v2.0_scaffold221G42737 Striga asiatica HOM05D001335 ORTHO05D001184 2.2e-07 59.7 38 71.1
Ca_26266_v3 Cicer arietinum L. HOM05D001335 ORTHO05D001184 2.9e-07 59.3 32 78.1
Migut.F00387 Erythranthe guttata HOM05D001335 ORTHO05D001184 2.9e-07 59.3 35 71.4
Medtr6g465150 Medicago truncatula HOM05D001335 ORTHO05D001184 2.9e-07 59.3 32 78.1
Psat6g091800 Pisum sativum HOM05D001335 ORTHO05D001184 2.9e-07 59.3 32 78.1
TWI14G1133 Tripterygium wilfordii HOM05D001335 ORTHO05D001184 2.9e-07 59.3 33 78.8
A10p09770 Brassica napus HOM05D001335 ORTHO05D001184 3.8e-07 58.9 39 69.2
CARHR264920 Cardamine hirsuta HOM05D001335 ORTHO05D001184 3.8e-07 58.9 39 69.2
AL8G26310 Arabidopsis lyrata HOM05D001335 ORTHO05D001184 5.0e-07 58.5 40 67.5
AT5G51980 Arabidopsis thaliana HOM05D001335 ORTHO05D001184 5.0e-07 58.5 40 67.5
arahy.Tifrunner.gnm1.ann1.HBJB6N Arachis hypogaea HOM05D001335 ORTHO05D001184 5.0e-07 58.5 32 78.1
arahy.Tifrunner.gnm1.ann1.UFST2G Arachis hypogaea HOM05D001335 ORTHO05D001184 5.0e-07 58.5 32 78.1
CANSAT21G2571 Cannabis sativa HOM05D001335 ORTHO05D001184 5.0e-07 58.5 39 69.2
Carub.0008s1207 Capsella rubella HOM05D001335 ORTHO05D001184 5.0e-07 58.5 40 67.5
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 5.0e-07 58.5 48 60.4
Lj8A30G93 Lonicera japonica HOM05D001335 ORTHO05D001184 5.0e-07 58.5 32 78.1
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 5.0e-07 58.5 52 53.8
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 5.0e-07 58.5 46 58.7
THA.LOC104811483 Tarenaya hassleriana HOM05D001335 ORTHO05D001184 5.0e-07 58.5 38 71.1
Aa31LG3G8400 Aethionema arabicum HOM05D001335 ORTHO05D001184 6.5e-07 58.2 40 67.5
BcaC04g20614 Brassica carinata HOM05D001335 ORTHO05D001184 6.5e-07 58.2 40 65.0
C09p41490 Brassica napus HOM05D001335 ORTHO05D001184 6.5e-07 58.2 40 65.0
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 6.5e-07 58.2 53 56.6
Thhalv10013582m.g Eutrema salsugineum HOM05D001335 ORTHO05D001184 6.5e-07 58.2 40 65.0
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 6.5e-07 58.2 101 39.6
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 6.5e-07 58.2 46 63.0
Sabra12G0101400 Salix brachista HOM05D001335 ORTHO05D001184 6.5e-07 58.2 36 63.9
Sed0005940 Sechium edule HOM05D001335 ORTHO05D001184 8.5e-07 57.8 32 81.2
TPR.G9190 Trifolium pratense HOM05D001335 ORTHO05D001184 8.5e-07 57.8 32 78.1
Sed0006772 Sechium edule HOM05D001335 ORTHO05D001184 1.1e-06 57.4 32 78.1
THA.LOC104811485 Tarenaya hassleriana HOM05D001335 ORTHO05D001184 1.1e-06 57.4 32 78.1
CSS0045148 Camellia sinensis var. sinensis HOM05D001335 ORTHO05D001184 1.4e-06 57.0 32 75.0
CAN.G428.4 Capsicum annuum HOM05D001335 ORTHO05D001184 1.4e-06 57.0 32 75.0
MELO3C026622.2 Cucumis melo HOM05D001335 ORTHO05D001184 1.4e-06 57.0 55 52.7
MD01G1195600 Malus domestica HOM05D001335 ORTHO05D001184 1.4e-06 57.0 32 75.0
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 1.4e-06 57.0 46 63.0
Nitab4.5_0007088g0030 Nicotiana tabacum HOM05D001335 ORTHO05D001184 1.4e-06 57.0 32 75.0
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 1.4e-06 57.0 47 61.7
TWI23G0350 Tripterygium wilfordii HOM05D001335 ORTHO05D001184 1.4e-06 57.0 32 78.1
unitig_37.g11949 Utricularia gibba HOM05D001335 ORTHO05D001184 1.4e-06 57.0 35 68.6
arahy.Tifrunner.gnm1.ann1.DAPK4A Arachis hypogaea HOM05D001335 ORTHO05D001184 1.9e-06 56.6 32 75.0
arahy.Tifrunner.gnm1.ann1.DD99A7 Arachis hypogaea HOM05D001335 ORTHO05D001184 1.9e-06 56.6 55 52.7
arahy.Tifrunner.gnm1.ann1.E8Y2WS Arachis hypogaea HOM05D001335 ORTHO05D001184 1.9e-06 56.6 32 75.0
ClCG10G013550 Citrullus lanatus HOM05D001335 ORTHO05D001184 1.9e-06 56.6 31 80.6
Cc02_g03500 Coffea canephora HOM05D001335 ORTHO05D001184 1.9e-06 56.6 32 75.0
Lalb_Chr19g0131101 Lupinus albus HOM05D001335 ORTHO05D001184 1.9e-06 56.6 40 62.5
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 1.9e-06 56.6 46 63.0
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 1.9e-06 56.6 67 52.2
GSVIVG01010638001 Vitis vinifera HOM05D001335 ORTHO05D001184 1.9e-06 56.6 32 78.1
MSTRG.8437 Avicennia marina HOM05D001335 ORTHO05D001184 2.5e-06 56.2 35 68.6
DCAR_009404 Daucus carota HOM05D001335 ORTHO05D001184 2.5e-06 56.2 40 62.5
Dinv28497 Davidia involucrata HOM05D001335 ORTHO05D001184 2.5e-06 56.2 32 75.0
Lalb_Chr01g0008971 Lupinus albus HOM05D001335 ORTHO05D001184 2.5e-06 56.2 34 70.6
Lalb_Chr03g0034211 Lupinus albus HOM05D001335 ORTHO05D001184 2.5e-06 56.2 39 64.1
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 2.5e-06 56.2 56 55.4
Atru.chr1.542 Acer truncatum HOM05D001335 ORTHO05D001184 3.2e-06 55.8 30 80.0
Cpa.g.sc4.223 Carica papaya HOM05D001335 ORTHO05D001184 3.2e-06 55.8 32 71.9
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 3.2e-06 55.8 47 59.6
Manes.06G142500 Manihot esculenta HOM05D001335 ORTHO05D001184 3.2e-06 55.8 32 75.0
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 3.2e-06 55.8 47 61.7
Potri.012G134800 Populus trichocarpa HOM05D001335 ORTHO05D001184 3.2e-06 55.8 32 71.9
Potri.015G137200 Populus trichocarpa HOM05D001335 ORTHO05D001184 3.2e-06 55.8 32 71.9
Sp6g14230 Schrenkiella parvula HOM05D001335 ORTHO05D001184 3.2e-06 55.8 40 62.5
vmacro06748 Vaccinium macrocarpon HOM05D001335 ORTHO05D001184 3.2e-06 55.8 32 71.9
BcaB08g35553 Brassica carinata HOM05D001335 ORTHO05D001184 4.2e-06 55.5 40 62.5
BcaC01g06150 Brassica carinata HOM05D001335 ORTHO05D001184 4.2e-06 55.5 40 62.5
A03p15940 Brassica napus HOM05D001335 ORTHO05D001184 4.2e-06 55.5 40 62.5
C03p18740 Brassica napus HOM05D001335 ORTHO05D001184 4.2e-06 55.5 40 62.5
BolC3t14265H Brassica oleracea HOM05D001335 ORTHO05D001184 4.2e-06 55.5 40 62.5
BraA03t10884Z Brassica rapa HOM05D001335 ORTHO05D001184 4.2e-06 55.5 40 62.5
CsaV3_3G043090 Cucumis sativus L. HOM05D001335 ORTHO05D001184 4.2e-06 55.5 55 50.9
FvH4_7g28880 Fragaria vesca HOM05D001335 ORTHO05D001184 4.2e-06 55.5 31 77.4
FAN01G1359 Fragaria x ananassa HOM05D001335 ORTHO05D001184 4.2e-06 55.5 31 77.4
FAN03G1395 Fragaria x ananassa HOM05D001335 ORTHO05D001184 4.2e-06 55.5 31 77.4
FAN03G1833 Fragaria x ananassa HOM05D001335 ORTHO05D001184 4.2e-06 55.5 31 77.4
FAN06G1785 Fragaria x ananassa HOM05D001335 ORTHO05D001184 4.2e-06 55.5 31 77.4
FAN06G4225 Fragaria x ananassa HOM05D001335 ORTHO05D001184 4.2e-06 55.5 31 77.4
FAN10G1082 Fragaria x ananassa HOM05D001335 ORTHO05D001184 4.2e-06 55.5 31 77.4
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 4.2e-06 55.5 52 51.9
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 4.2e-06 55.5 47 55.3
Oeu008523.1 Olea europaea HOM05D001335 ORTHO05D001184 4.2e-06 55.5 30 80.0
RcHm_v2.0_Chr1g0376561 Rosa chinensis HOM05D001335 ORTHO05D001184 4.2e-06 55.5 31 77.4
Sabra15G0148800 Salix brachista HOM05D001335 ORTHO05D001184 4.2e-06 55.5 32 71.9
SalBow4G1278 Salvia bowleyana HOM05D001335 ORTHO05D001184 4.2e-06 55.5 35 65.7
Solyc03g026350.3 Solanum lycopersicum HOM05D001335 ORTHO05D001184 4.2e-06 55.5 32 71.9
Sopen03g005250 Solanum pennellii HOM05D001335 ORTHO05D001184 4.2e-06 55.5 32 71.9
SGA_v2.0_scaffold2G01088 Striga asiatica HOM05D001335 ORTHO05D001184 4.2e-06 55.5 35 68.6
MSTRG.27142 Avicennia marina HOM05D001335 ORTHO05D001184 5.5e-06 55.1 32 75.0
BcaB01g04175 Brassica carinata HOM05D001335 ORTHO05D001184 5.5e-06 55.1 34 67.6
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 5.5e-06 55.1 59 49.2
Ciclev10005002m.g Citrus clementina HOM05D001335 ORTHO05D001184 5.5e-06 55.1 32 71.9
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 5.5e-06 55.1 57 57.9
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 5.5e-06 55.1 115 34.8
HanXRQChr13g0405591 Helianthus annuus HOM05D001335 ORTHO05D001184 5.5e-06 55.1 32 71.9
Lsat_1_v5_gn_8_7660 Lactuca sativa HOM05D001335 ORTHO05D001184 5.5e-06 55.1 32 71.9
Lalb_Chr01g0009081 Lupinus albus HOM05D001335 ORTHO05D001184 5.5e-06 55.1 40 60.0
Oeu047981.3 Olea europaea HOM05D001335 ORTHO05D001184 5.5e-06 55.1 34 70.6
Prupe.2G288900 Prunus persica HOM05D001335 ORTHO05D001184 5.5e-06 55.1 32 71.9
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 5.5e-06 55.1 47 55.3
arahy.Tifrunner.gnm1.ann1.C4VQXX Arachis hypogaea HOM05D001335 ORTHO05D001184 7.2e-06 54.7 55 52.7
arahy.Tifrunner.gnm1.ann1.MCR2FH Arachis hypogaea HOM05D001335 ORTHO05D001184 7.2e-06 54.7 55 52.7
arahy.Tifrunner.gnm1.ann1.Q95WBF Arachis hypogaea HOM05D001335 ORTHO05D001184 7.2e-06 54.7 55 52.7
Haze_13775 Corylus avellana HOM05D001335 ORTHO05D001184 9.4e-06 54.3 34 70.6
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 9.4e-06 54.3 56 51.8
DCAR_018151 Daucus carota HOM05D001335 ORTHO05D001184 9.4e-06 54.3 32 68.8
Dinv35166 Davidia involucrata HOM05D001335 ORTHO05D001184 9.4e-06 54.3 32 68.8
Hma1.2p1_0270F.1_g108580 Hydrangea macrophylla HOM05D001335 ORTHO05D001184 9.4e-06 54.3 32 71.9
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 9.4e-06 54.3 100 40.0
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 9.4e-06 54.3 46 56.5
MD07G1262400 Malus domestica HOM05D001335 ORTHO05D001184 9.4e-06 54.3 32 71.9
Nitab4.5_0017383g0010 Nicotiana tabacum HOM05D001335 ORTHO05D001184 9.4e-06 54.3 32 71.9
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 9.4e-06 54.3 47 55.3


User provided reference genes

Program Settings