Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 1.4e-257 892.5 469 100.0
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 1.0e-255 886.3 469 99.4
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 3.9e-252 874.4 469 97.7
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 5.7e-251 870.5 469 97.0
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 1.7e-250 869.0 468 98.9
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 4.7e-245 850.9 469 95.5
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 2.0e-243 845.5 469 94.2
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 2.0e-243 845.5 469 94.0
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 2.0e-243 845.5 469 94.0
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 1.1e-241 839.7 469 93.8
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 3.1e-241 838.2 471 94.1
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 7.7e-240 833.6 495 89.3
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 1.0e-239 833.2 469 93.4
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 2.9e-239 831.6 469 92.5
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 4.0e-236 821.2 469 91.0
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 7.5e-235 817.0 470 90.2
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 2.7e-224 781.9 469 87.4
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 1.5e-211 739.6 465 83.7
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 3.9e-207 724.9 409 92.9
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 1.5e-195 686.4 473 77.4
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 2.2e-194 682.6 464 76.3
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 1.1e-193 680.2 443 77.9
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 1.7e-191 672.9 482 74.1
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 5.1e-191 671.4 465 75.1
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 1.9e-190 669.5 471 75.2
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 2.8e-189 665.6 471 73.7
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 1.8e-188 662.9 465 75.3
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 4.0e-188 661.8 471 72.6
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 4.0e-188 661.8 471 74.7
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 6.8e-188 661.0 473 73.8
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 6.8e-188 661.0 472 73.7
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 8.9e-188 660.6 444 77.3
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 4.4e-187 658.3 448 76.6
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 4.4e-187 658.3 473 73.2
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 2.2e-186 656.0 472 74.4
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 1.1e-185 653.7 462 72.7
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 1.4e-185 653.3 472 74.2
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 1.9e-185 652.9 476 73.1
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 2.4e-185 652.5 462 72.7
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 4.2e-185 651.7 444 76.1
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 5.4e-185 651.4 473 72.9
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 5.4e-185 651.4 470 74.0
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 9.2e-185 650.6 469 73.6
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 9.2e-185 650.6 464 73.9
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 1.2e-184 650.2 467 73.0
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 1.6e-184 649.8 469 74.4
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 4.6e-184 648.3 469 73.3
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 7.8e-184 647.5 470 73.6
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 1.0e-183 647.1 470 74.0
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 1.0e-183 647.1 444 75.7
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 1.3e-183 646.7 469 73.8
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 1.7e-183 646.4 468 72.4
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 1.7e-183 646.4 509 69.7
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 3.0e-183 645.6 476 71.8
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 3.9e-183 645.2 448 75.4
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 5.1e-183 644.8 471 72.2
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 1.1e-182 643.7 463 73.0
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 2.5e-182 642.5 450 75.3
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 2.5e-182 642.5 475 72.2
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 3.3e-182 642.1 485 70.7
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 3.3e-182 642.1 471 72.2
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 3.3e-182 642.1 475 72.6
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 4.3e-182 641.7 466 73.0
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 9.6e-182 640.6 463 71.9
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 1.2e-181 640.2 477 71.3
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 2.8e-181 639.0 461 73.1
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 6.2e-181 637.9 453 73.1
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 2.4e-180 636.0 444 75.2
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 3.1e-180 635.6 464 70.7
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 3.1e-180 635.6 436 76.4
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 3.1e-180 635.6 468 72.4
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 4.0e-180 635.2 468 71.4
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 9.0e-180 634.0 462 71.4
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 1.5e-179 633.3 444 73.2
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 2.6e-179 632.5 439 75.2
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 2.6e-179 632.5 443 74.5
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 3.4e-179 632.1 467 72.6
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 2.2e-178 629.4 461 71.1
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 2.9e-178 629.0 461 70.5
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 3.8e-178 628.6 464 72.0
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 6.4e-178 627.9 465 71.2
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 1.1e-177 627.1 473 70.4
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 1.4e-177 626.7 478 69.9
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 3.5e-176 622.1 479 69.9
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 5.1e-175 618.2 460 71.7
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 2.8e-173 612.5 409 77.8
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 4.8e-173 611.7 399 79.2
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 2.4e-172 609.4 456 70.0
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 3.1e-172 609.0 459 69.7
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 4.0e-172 608.6 445 73.0
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 4.2e-169 598.6 461 70.3
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 1.8e-167 593.2 484 65.9
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 3.7e-165 585.5 439 70.8
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 8.1e-165 584.3 422 70.9
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 8.1e-165 584.3 423 71.4
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 1.9e-161 573.2 549 59.9
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 5.5e-161 571.6 422 73.9
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 2.1e-160 569.7 398 75.4
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 2.7e-160 569.3 426 72.1
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 2.4e-156 556.2 417 72.7
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 3.4e-155 552.4 449 66.6
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 2.7e-152 542.7 423 66.9
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 1.8e-151 540.0 385 70.6
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 5.1e-151 538.5 409 70.2
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 9.7e-150 534.3 395 72.9
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 4.4e-134 482.3 434 59.0
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 5.0e-130 468.8 339 74.3
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 1.9e-129 466.8 360 66.7
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 1.0e-127 461.1 432 63.2
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 1.7e-125 453.8 472 57.4
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 5.3e-124 448.7 329 68.7
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 8.5e-122 441.4 430 57.0
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 4.7e-120 435.6 462 54.1
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 7.7e-115 418.3 327 71.6
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 1.6e-99 367.5 388 55.2
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 3.9e-98 362.8 251 76.5
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 7.1e-76 288.9 202 74.8
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 2.1e-75 287.3 231 68.4
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 6.0e-75 285.8 235 66.8
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 4.3e-73 279.6 195 73.8
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.0e-66 258.5 204 67.2
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 1.5e-65 254.6 218 60.6
VMungo0720G1280 Vigna mungo HOM05D004269 ORTHO05D007106 7.3e-57 225.7 147 74.1
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 8.1e-56 222.2 458 36.9
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 2.4e-55 220.7 182 67.0
SEGI_16124 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 3.5e-43 180.3 122 68.9
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 2.9e-37 160.6 140 63.6
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 3.8e-37 160.2 137 64.2
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 1.2e-30 138.7 264 37.9
Cc02_g24250 Coffea canephora HOM05D004269 ORTHO05D007106 1.5e-30 138.3 103 67.0
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 2.2e-29 134.4 131 62.6
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 3.8e-29 133.7 131 61.8
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 5.0e-29 133.3 158 53.8
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 6.5e-29 132.9 131 61.8
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 6.5e-29 132.9 131 61.8
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 6.5e-29 132.9 131 61.8
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 8.5e-29 132.5 131 61.8
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 1.1e-28 132.1 131 61.1
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 4.2e-28 130.2 264 36.7
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 2.7e-27 127.5 103 65.0
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 7.9e-27 125.9 137 59.1
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 3.0e-26 124.0 133 59.4
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 6.7e-26 122.9 130 56.9
QL09p013305 Quercus lobata HOM05D004269 ORTHO05D010618 4.8e-24 116.7 101 62.4
BcaB08g34435 Brassica carinata HOM05D004269 ORTHO05D000659 9.1e-23 112.5 62 87.1
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 1.3e-21 108.6 100 61.0
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 2.1e-19 101.3 121 52.1
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 7.9e-19 99.4 111 57.7
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 1.4e-18 98.6 125 52.0
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 2.3e-18 97.8 131 50.4
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 6.7e-18 96.3 72 73.6
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 8.8e-18 95.9 108 58.3
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 3.1e-15 87.4 84 56.0
Lsat_1_v5_gn_1_104560 Lactuca sativa HOM05D001098 ORTHO05D003515 3.2e-12 77.4 46 69.6
Lsat_1_v5_gn_9_124300 Lactuca sativa HOM05D001098 ORTHO05D003515 3.2e-12 77.4 46 69.6
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 2.7e-11 74.3 93 47.3
CARHR249580 Cardamine hirsuta HOM05D004269 ORTHO05D021565 6.1e-11 73.2 49 79.6
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 6.1e-11 73.2 64 65.6
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 6.1e-11 73.2 166 35.5
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 1.0e-10 72.4 90 53.3
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 1.4e-10 72.0 93 46.2
BcaC07g37609 Brassica carinata HOM05D004269 ORTHO05D013520 4.0e-10 70.5 103 45.6
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 5.2e-10 70.1 175 32.6
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 8.8e-10 69.3 124 42.7
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 1.3e-08 65.5 44 79.5
C06p14100 Brassica napus HOM05D004269 ORTHO05D013520 4.8e-08 63.5 46 76.1
CAN.G1327.6 Capsicum annuum HOM05D004269 ORTHO05D007861 4.1e-07 60.5 48 68.8
BcaC07g37638 Brassica carinata HOM05D004269 ORTHO05D016737 1.6e-06 58.5 39 76.9
Glyma.18G131800 Glycine max HOM05D004269 ORTHO05D213362 1.6e-06 58.5 83 41.0


User provided reference genes

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