Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11777 Brassica carinata HOM05D006485 ORTHO05D006108 7.4e-79 298.5 387 100.0
BolC4t22800H Brassica oleracea HOM05D006485 ORTHO05D006108 6.9e-77 292.0 388 99.5
C04p11500 Brassica napus HOM05D006485 ORTHO05D006108 7.0e-45 185.7 353 88.1
A05p09230 Brassica napus HOM05D006485 ORTHO05D006108 1.1e-42 178.3 378 74.3
Sp4g18920 Schrenkiella parvula HOM05D006485 ORTHO05D006108 3.7e-38 163.3 435 64.4
Carub.0004s1846 Capsella rubella HOM05D006485 ORTHO05D006108 9.1e-37 158.7 412 69.2
CARHR130920 Cardamine hirsuta HOM05D006485 ORTHO05D006108 5.9e-36 156.0 376 69.4
AL4G32820 Arabidopsis lyrata HOM05D006485 ORTHO05D006108 1.9e-34 151.0 429 65.7
BolC4t28034H Brassica oleracea HOM05D006485 ORTHO05D006108 3.2e-34 150.2 388 74.0
C04p65460 Brassica napus HOM05D006485 ORTHO05D006108 5.5e-34 149.4 388 75.0
A04p28050 Brassica napus HOM05D006485 ORTHO05D006108 7.2e-34 149.1 388 75.0
BraA04t18292Z Brassica rapa HOM05D006485 ORTHO05D006108 1.2e-33 148.3 388 74.7
Thhalv10017525m.g Eutrema salsugineum HOM05D006485 ORTHO05D006108 1.6e-33 147.9 433 64.2
BcaB06g28951 Brassica carinata HOM05D006485 ORTHO05D006108 3.6e-33 146.7 381 76.1
BcaB06g28954 Brassica carinata HOM05D006485 ORTHO05D006108 4.7e-33 146.4 388 73.7
AT2G36640 Arabidopsis thaliana HOM05D006485 ORTHO05D006108 2.3e-32 144.1 433 65.6
BcaC02g07584 Brassica carinata HOM05D006485 ORTHO05D006108 1.7e-27 127.9 340 62.9
Aa31LG5G21840 Aethionema arabicum HOM05D006485 ORTHO05D006108 2.5e-26 124.0 96 75.0
A04p06430 Brassica napus HOM05D006485 ORTHO05D006108 9.5e-18 95.5 99 57.6
BraA04t16347Z Brassica rapa HOM05D006485 ORTHO05D006108 9.5e-18 95.5 99 57.6
AT3G53040 Arabidopsis thaliana HOM05D006485 ORTHO05D006108 2.8e-17 94.0 94 63.8
BcaC02g09194 Brassica carinata HOM05D006485 ORTHO05D006108 6.1e-17 92.8 100 56.0
C04p39920 Brassica napus HOM05D006485 ORTHO05D006108 6.1e-17 92.8 100 56.0
BolC4t25563H Brassica oleracea HOM05D006485 ORTHO05D006108 6.1e-17 92.8 100 56.0
Sp5g09280 Schrenkiella parvula HOM05D006485 ORTHO05D006108 8.0e-17 92.4 99 60.6
AL5G33870 Arabidopsis lyrata HOM05D006485 ORTHO05D006108 1.4e-16 91.7 94 61.7
Thhalv10010945m.g Eutrema salsugineum HOM05D006485 ORTHO05D006108 2.3e-16 90.9 102 54.9
BcaB02g08540 Brassica carinata HOM05D006485 ORTHO05D006108 4.0e-16 90.1 100 55.0
CARHR162930 Cardamine hirsuta HOM05D006485 ORTHO05D006108 1.5e-15 88.2 94 60.6
Carub.0005s1954 Capsella rubella HOM05D006485 ORTHO05D006108 2.6e-15 87.4 94 58.5
MELO3C009418.2 Cucumis melo HOM05D006485 ORTHO05D006108 4.4e-15 86.7 103 51.5
FAN09G4412 Fragaria x ananassa HOM05D006485 ORTHO05D006108 9.8e-15 85.5 102 47.1
THA.LOC104827498 Tarenaya hassleriana HOM05D006485 ORTHO05D006108 1.3e-14 85.1 78 57.7
FAN14G0187 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.7e-14 84.7 102 48.0
FvH4_6g17400 Fragaria vesca HOM05D006485 ORTHO05D006108 2.2e-14 84.3 102 47.1
FAN02G3096 Fragaria x ananassa HOM05D006485 ORTHO05D006108 2.2e-14 84.3 102 47.1
FAN09G1969 Fragaria x ananassa HOM05D006485 ORTHO05D006108 2.2e-14 84.3 102 47.1
ClCG10G019560 Citrullus lanatus HOM05D006485 ORTHO05D006108 3.7e-14 83.6 105 48.6
CsaV3_3G036640 Cucumis sativus L. HOM05D006485 ORTHO05D006108 1.1e-13 82.0 98 50.0
QL07p041110 Quercus lobata HOM05D006485 ORTHO05D006108 1.8e-13 81.3 92 48.9
FAN05G3442 Fragaria x ananassa HOM05D006485 ORTHO05D006108 2.4e-13 80.9 102 46.1
FAN05G4746 Fragaria x ananassa HOM05D006485 ORTHO05D006108 7.0e-13 79.3 93 48.4
Eucgr.A01582 Eucalyptus grandis HOM05D006485 ORTHO05D006108 9.2e-13 79.0 98 45.9
Atru.chr8.1686 Acer truncatum HOM05D006485 ORTHO05D006108 7.8e-12 75.9 96 47.9
Thecc.05G077700 Theobroma cacao HOM05D006485 ORTHO05D006108 7.8e-12 75.9 86 51.2
PGSC0003DMG400002731 Solanum tuberosum HOM05D006485 ORTHO05D006108 1.3e-11 75.1 96 44.8
Ciclev10013512m.g Citrus clementina HOM05D006485 ORTHO05D006108 3.9e-11 73.6 88 47.7
COL.COLO4_22277 Corchorus olitorius HOM05D006485 ORTHO05D006108 6.6e-11 72.8 90 52.2
Cfa016504 Carpinus fangiana HOM05D006485 ORTHO05D006108 8.6e-11 72.4 92 50.0
Atru.chr8.1691 Acer truncatum HOM05D006485 ORTHO05D006108 1.5e-10 71.6 96 46.9
CAN.G824.55 Capsicum annuum HOM05D006485 ORTHO05D006108 1.5e-10 71.6 90 40.0
Cfa020727 Carpinus fangiana HOM05D006485 ORTHO05D006108 1.5e-10 71.6 90 45.6
Sopen09g003560 Solanum pennellii HOM05D006485 ORTHO05D006108 5.6e-10 69.7 102 39.2
Haze_19505 Corylus avellana HOM05D006485 ORTHO05D006108 7.3e-10 69.3 83 47.0
Peaxi162Scf00078g00310 Petunia axillaris HOM05D011389 ORTHO05D006108 7.3e-10 69.3 96 41.7
Peaxi162Scf00500g00067 Petunia axillaris HOM05D006485 ORTHO05D006108 1.6e-09 68.2 94 38.3
Peaxi162Scf00078g00039 Petunia axillaris HOM05D011389 ORTHO05D006108 2.8e-09 67.4 96 40.6
PGR004G2529 Punica granatum HOM05D006485 ORTHO05D006108 4.7e-09 66.6 83 44.6
RcHm_v2.0_Chr3g0471651 Rosa chinensis HOM05D006485 ORTHO05D006108 6.1e-09 66.2 109 40.4
Prupe.7G121500 Prunus persica HOM05D006485 ORTHO05D006108 2.3e-08 64.3 95 44.2
Hund12313 Selenicereus undatus HOM05D006485 ORTHO05D006108 2.3e-08 64.3 96 39.6
AUR62040165 Chenopodium quinoa HOM05D006485 ORTHO05D006108 3.1e-08 63.9 94 41.5
Gohir.D04G106200 Gossypium hirsutum HOM05D006485 ORTHO05D006108 3.1e-08 63.9 87 41.4
AUR62037914 Chenopodium quinoa HOM05D006485 ORTHO05D006108 4.0e-08 63.5 94 42.6
MD09G1267600 Malus domestica HOM05D006485 ORTHO05D006108 4.0e-08 63.5 74 50.0
Potri.015G060600 Populus trichocarpa HOM05D006485 ORTHO05D006108 4.0e-08 63.5 86 47.7
SalBow5G2944 Salvia bowleyana HOM05D006485 ORTHO05D006108 4.0e-08 63.5 95 41.1
SHI27750 Sapria himalayana HOM05D006485 ORTHO05D006108 5.2e-08 63.2 95 43.2
unitig_746.g26769 Utricularia gibba HOM05D006485 ORTHO05D006108 5.2e-08 63.2 80 42.5
Gohir.A04G067600 Gossypium hirsutum HOM05D006485 ORTHO05D006108 8.9e-08 62.4 87 41.4
Gorai.009G410100 Gossypium raimondii HOM05D006485 ORTHO05D006108 8.9e-08 62.4 87 40.2
FAN03G0002 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.5e-07 61.6 55 54.5
FAN10G0942 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.5e-07 61.6 55 54.5
FAN21G0234 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.5e-07 61.6 55 54.5
FAN21G1428 Fragaria x ananassa HOM05D006485 ORTHO05D006108 2.0e-07 61.2 55 54.5
FAN27G2855 Fragaria x ananassa HOM05D006485 ORTHO05D006108 2.0e-07 61.2 55 54.5
Gohir.D09G139000 Gossypium hirsutum HOM05D006485 ORTHO05D006108 2.0e-07 61.2 100 39.0
Nitab4.5_0000680g0110 Nicotiana tabacum HOM05D006485 ORTHO05D006108 2.0e-07 61.2 96 38.5
Gorai.006G159500 Gossypium raimondii HOM05D006485 ORTHO05D006108 2.6e-07 60.8 100 39.0
FAN11G0239 Fragaria x ananassa HOM05D006485 ORTHO05D006108 3.4e-07 60.5 55 52.7
FAN13G1461 Fragaria x ananassa HOM05D006485 ORTHO05D006108 3.4e-07 60.5 55 54.5
DCAR_020790 Daucus carota HOM05D006485 ORTHO05D006108 4.4e-07 60.1 93 39.8
DCAR_020791 Daucus carota HOM05D006485 ORTHO05D006108 4.4e-07 60.1 93 39.8
GSVIVG01033739001 Vitis vinifera HOM05D006485 ORTHO05D006108 4.4e-07 60.1 80 43.8
FAN11G0041 Fragaria x ananassa HOM05D006485 ORTHO05D006108 9.8e-07 58.9 101 36.6
EL10Ac7g16753 Beta vulgaris HOM05D006485 ORTHO05D006108 1.3e-06 58.5 101 38.6
Lsat_1_v5_gn_2_23681 Lactuca sativa HOM05D006485 ORTHO05D006108 1.3e-06 58.5 72 44.4
CSS0004621 Camellia sinensis var. sinensis HOM05D006485 ORTHO05D006108 1.7e-06 58.2 95 38.9
Gohir.A09G142800 Gossypium hirsutum HOM05D006485 ORTHO05D006108 1.7e-06 58.2 100 39.0
Sc02g0001270 Simmondsia chinensis HOM05D006485 ORTHO05D006108 2.2e-06 57.8 99 35.4
ECA238G0083 Erigeron canadensis HOM05D006485 ORTHO05D006108 2.9e-06 57.4 94 40.4
Glyma.10G064400 Glycine max HOM05D013674 ORTHO05D006108 2.9e-06 57.4 76 42.1
Solyc11g042800.2 Solanum lycopersicum HOM05D011389 ORTHO05D006108 2.9e-06 57.4 95 34.7
CANSAT80G1413 Cannabis sativa HOM05D006485 ORTHO05D006108 3.7e-06 57.0 106 35.8
arahy.Tifrunner.gnm1.ann1.YET5HL Arachis hypogaea HOM05D013121 ORTHO05D015407 6.4e-06 56.2 116 31.0
CSS0031113 Camellia sinensis var. sinensis HOM05D006485 ORTHO05D006108 6.4e-06 56.2 95 37.9
Ca_08949_v3 Cicer arietinum L. HOM05D013121 ORTHO05D015407 6.4e-06 56.2 128 32.0


User provided reference genes

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