Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11730 Brassica carinata HOM05D004449 ORTHO05D005473 2.1e-61 238.8 118 100.0
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 3.4e-59 231.5 113 100.0
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 2.4e-57 225.3 113 97.3
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 6.2e-53 210.7 113 90.3
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 9.5e-46 186.8 113 83.2
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 9.5e-46 186.8 113 83.2
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 2.6e-43 178.7 113 80.5
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 4.1e-41 171.4 113 77.9
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 7.1e-41 170.6 113 76.1
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 4.6e-40 167.9 113 77.0
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 2.3e-36 155.6 113 71.7
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 2.3e-36 155.6 114 71.9
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 3.1e-36 155.2 114 72.8
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 3.1e-36 155.2 114 72.8
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 8.9e-36 153.7 114 73.7
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 1.2e-35 153.3 115 72.2
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 4.4e-35 151.4 114 71.9
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 4.4e-35 151.4 114 72.8
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 2.9e-34 148.7 115 71.3
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 1.3e-31 139.8 113 67.3
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 2.5e-30 135.6 116 65.5
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 6.9e-28 127.5 80 77.5
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 2.0e-27 125.9 84 77.4
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 2.6e-27 125.6 84 77.4
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 3.4e-27 125.2 84 77.4
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 2.2e-26 122.5 84 75.0
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 2.9e-26 122.1 69 85.5
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 3.8e-26 121.7 115 61.7
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 8.4e-26 120.6 70 84.3
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 1.9e-25 119.4 81 75.3
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 3.2e-25 118.6 74 79.7
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 5.4e-25 117.9 111 58.6
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 5.4e-25 117.9 72 77.8
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 5.4e-25 117.9 118 54.2
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 5.4e-25 117.9 117 57.3
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 9.3e-25 117.1 113 57.5
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 9.3e-25 117.1 108 63.0
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.7e-24 115.5 106 60.4
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 3.5e-24 115.2 70 78.6
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 3.5e-24 115.2 70 75.7
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 3.5e-24 115.2 70 75.7
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 4.6e-24 114.8 70 77.1
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 4.6e-24 114.8 102 58.8
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 7.8e-24 114.0 74 74.3
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 1.0e-23 113.6 79 73.4
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 1.3e-23 113.2 77 70.1
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 1.3e-23 113.2 88 61.4
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 2.3e-23 112.5 74 73.0
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 2.3e-23 112.5 72 75.0
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 3.0e-23 112.1 77 70.1
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 3.9e-23 111.7 79 70.9
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 3.9e-23 111.7 77 67.5
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 3.9e-23 111.7 72 75.0
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 3.9e-23 111.7 117 53.0
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 5.1e-23 111.3 109 59.6
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 5.1e-23 111.3 109 59.6
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 5.1e-23 111.3 103 60.2
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 6.6e-23 110.9 113 52.2
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 1.1e-22 110.2 72 73.6
ECA233G4866 Erigeron canadensis HOM05D004449 ORTHO05D005473 1.1e-22 110.2 62 85.5
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 1.1e-22 110.2 113 54.0
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 1.9e-22 109.4 71 74.6
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 2.5e-22 109.0 113 53.1
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 2.5e-22 109.0 77 68.8
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 2.5e-22 109.0 77 68.8
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 3.3e-22 108.6 69 72.5
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 4.3e-22 108.2 74 71.6
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 4.3e-22 108.2 64 82.8
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 5.6e-22 107.8 77 66.2
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 5.6e-22 107.8 77 68.8
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 7.3e-22 107.5 101 63.4
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 7.3e-22 107.5 114 55.3
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 9.6e-22 107.1 71 71.8
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 1.3e-21 106.7 100 62.0
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 1.3e-21 106.7 71 71.8
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 1.3e-21 106.7 71 71.8
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 1.3e-21 106.7 95 60.0
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 1.6e-21 106.3 71 71.8
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 2.1e-21 105.9 113 52.2
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 2.1e-21 105.9 100 59.0
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 2.8e-21 105.5 72 69.4
COL.COLO4_29730 Corchorus olitorius HOM05D004449 ORTHO05D005473 2.8e-21 105.5 113 54.0
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 2.8e-21 105.5 93 60.2
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 3.6e-21 105.1 73 74.0
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 3.6e-21 105.1 74 68.9
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 3.6e-21 105.1 69 73.9
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 3.6e-21 105.1 74 68.9
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 3.6e-21 105.1 70 71.4
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 3.6e-21 105.1 110 52.7
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 4.8e-21 104.8 69 76.8
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 4.8e-21 104.8 74 67.6
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 4.8e-21 104.8 96 61.5
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 6.2e-21 104.4 72 70.8
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 6.2e-21 104.4 71 69.0
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 6.2e-21 104.4 71 69.0
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 8.1e-21 104.0 69 71.0
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 8.1e-21 104.0 64 79.7
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 1.1e-20 103.6 65 75.4
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 1.1e-20 103.6 63 82.5
Os05g0400800 Oryza sativa ssp. japonica HOM05D004449 ORTHO05D005473 1.1e-20 103.6 88 62.5
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 1.8e-20 102.8 70 75.7
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 2.4e-20 102.4 66 75.8
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 2.4e-20 102.4 62 75.8
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 3.1e-20 102.1 69 73.9
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 4.0e-20 101.7 96 55.2
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 4.0e-20 101.7 70 74.3
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 1.2e-19 100.1 91 64.8
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 1.5e-19 99.8 70 67.1
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 2.0e-19 99.4 77 66.2
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 2.6e-19 99.0 67 73.1
SEGI_28293 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 3.4e-19 98.6 63 69.8
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 4.5e-19 98.2 50 96.0
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 7.6e-19 97.4 104 52.9
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 1.1e-17 93.6 68 69.1
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 1.1e-17 93.6 81 60.5
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 4.2e-17 91.7 75 65.3
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 9.3e-17 90.5 67 67.2
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 1.6e-16 89.7 67 65.7
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 1.3e-15 86.7 63 69.8
Sabra04G0060800 Salix brachista HOM05D004449 ORTHO05D005473 6.7e-15 84.3 59 71.2
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 8.7e-15 84.0 52 78.8
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 8.7e-15 84.0 106 50.0
Lalb_Chr06g0172371 Lupinus albus HOM05D004449 ORTHO05D005473 1.1e-14 83.6 51 82.4
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 1.1e-14 83.6 66 60.6
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 4.3e-14 81.6 66 63.6
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 5.6e-14 81.3 52 75.0
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 5.6e-14 81.3 52 75.0
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 9.6e-14 80.5 53 75.5
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 2.1e-13 79.3 54 68.5
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 1.8e-12 76.3 51 74.5
Rhsim09G0019600 Rhododendron simsii HOM05D004449 ORTHO05D005473 6.9e-12 74.3 52 69.2
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 1.2e-11 73.6 76 55.3
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 2.0e-11 72.8 51 72.5
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 9.3e-09 63.9 62 51.6
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 1.5e-06 56.6 31 80.6
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 3.3e-06 55.5 37 67.6
RcHm_v2.0_Chr4g0409701 Rosa chinensis HOM05D004449 ORTHO05D005473 9.6e-06 53.9 29 82.8


User provided reference genes

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