Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 7.4e-130 467.2 238 100.0
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 1.2e-82 310.5 193 86.0
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 8.8e-75 284.3 190 80.5
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 1.5e-69 266.9 168 83.9
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 1.5e-69 266.9 168 83.9
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 3.7e-65 252.3 168 81.0
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 8.3e-65 251.1 168 80.4
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 3.1e-64 249.2 168 79.8
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 3.1e-64 249.2 168 79.2
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 5.4e-64 248.4 168 79.2
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 7.0e-64 248.1 193 71.5
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 1.6e-63 246.9 168 78.0
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 1.6e-63 246.9 168 78.0
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 2.7e-63 246.1 168 78.0
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 2.7e-63 246.1 168 78.0
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 3.5e-63 245.7 168 78.0
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 3.5e-63 245.7 168 78.6
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 4.5e-63 245.4 167 80.2
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 7.8e-63 244.6 168 76.8
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 1.0e-62 244.2 168 76.8
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 1.3e-62 243.8 168 77.4
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 1.4e-56 223.8 168 70.2
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 1.9e-56 223.4 168 70.8
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 1.9e-56 223.4 168 70.8
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 3.2e-56 222.6 168 70.2
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 2.0e-55 219.9 168 69.0
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 2.7e-55 219.5 168 69.0
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 4.6e-55 218.8 168 69.0
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 4.6e-55 218.8 168 67.9
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 6.0e-55 218.4 168 68.5
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 7.8e-55 218.0 168 68.5
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 1.3e-54 217.2 168 68.5
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 1.3e-54 217.2 168 68.5
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 3.0e-54 216.1 168 69.0
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 3.0e-54 216.1 168 68.5
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 3.0e-54 216.1 168 67.3
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 3.9e-54 215.7 168 67.9
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 3.9e-54 215.7 168 68.5
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 3.9e-54 215.7 168 67.9
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 5.0e-54 215.3 168 67.9
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 5.0e-54 215.3 168 67.9
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 5.0e-54 215.3 168 67.9
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 6.6e-54 214.9 169 68.0
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 6.6e-54 214.9 168 66.1
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 8.6e-54 214.5 168 67.9
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 8.6e-54 214.5 168 67.9
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 8.6e-54 214.5 168 67.9
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 1.1e-53 214.2 168 67.3
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 1.9e-53 213.4 168 67.9
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 1.9e-53 213.4 168 67.9
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 1.9e-53 213.4 168 67.3
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 3.3e-53 212.6 168 66.7
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 3.3e-53 212.6 168 67.3
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 3.3e-53 212.6 168 67.3
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 3.3e-53 212.6 168 66.1
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 5.6e-53 211.8 168 66.1
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 5.6e-53 211.8 168 66.7
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 5.6e-53 211.8 168 66.7
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 7.3e-53 211.5 168 66.1
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 1.2e-52 210.7 168 66.7
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.2e-52 210.7 168 66.7
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 1.6e-52 210.3 168 65.5
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 1.6e-52 210.3 168 64.3
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 1.6e-52 210.3 168 66.7
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 2.1e-52 209.9 168 66.7
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 2.1e-52 209.9 168 66.1
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 2.1e-52 209.9 168 66.1
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 2.8e-52 209.5 168 66.1
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 2.8e-52 209.5 168 65.5
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 4.7e-52 208.8 168 66.7
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 4.7e-52 208.8 168 66.7
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 6.2e-52 208.4 168 66.7
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 6.2e-52 208.4 189 59.3
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 8.0e-52 208.0 168 63.1
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 8.0e-52 208.0 168 66.1
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 8.0e-52 208.0 168 66.1
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 1.1e-51 207.6 168 64.3
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 1.4e-51 207.2 168 64.3
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 1.4e-51 207.2 168 66.1
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 2.3e-51 206.5 168 66.1
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 4.0e-51 205.7 168 63.1
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 5.2e-51 205.3 168 65.5
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 5.2e-51 205.3 168 65.5
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 5.2e-51 205.3 168 65.5
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 5.2e-51 205.3 169 64.5
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 6.8e-51 204.9 168 64.9
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 8.9e-51 204.5 168 63.7
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 8.9e-51 204.5 192 58.3
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 1.2e-50 204.1 174 62.6
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 1.2e-50 204.1 167 64.1
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 1.5e-50 203.8 168 64.9
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 1.5e-50 203.8 192 59.4
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 1.5e-50 203.8 192 59.4
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 2.6e-50 203.0 168 63.1
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 3.4e-50 202.6 168 63.7
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 3.4e-50 202.6 168 63.7
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 3.4e-50 202.6 168 63.7
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 4.4e-50 202.2 168 64.3
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 7.5e-50 201.4 168 60.1
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 9.8e-50 201.1 168 62.5
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 9.8e-50 201.1 168 62.5
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 1.3e-49 200.7 168 63.7
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 1.9e-48 196.8 168 64.3
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 2.4e-48 196.4 168 61.9
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 5.4e-48 195.3 167 61.1
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 7.8e-47 191.4 159 62.9
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 1.0e-46 191.0 168 60.1
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 5.1e-46 188.7 168 58.3
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 1.2e-44 184.1 159 61.0
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 1.6e-44 183.7 168 58.9
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 6.2e-44 181.8 173 55.5
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 6.2e-44 181.8 168 57.1
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 8.1e-44 181.4 152 63.8
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 8.1e-44 181.4 159 61.6
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 3.1e-43 179.5 233 46.4
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 6.8e-43 178.3 168 56.0
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 8.9e-43 177.9 108 77.8
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 2.0e-42 176.8 161 60.9
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 3.4e-42 176.0 106 79.2
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 2.9e-41 172.9 104 80.8
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 6.4e-41 171.8 172 59.9
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 4.6e-39 165.6 168 53.6
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 3.0e-38 162.9 171 51.5
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 9.5e-37 157.9 166 56.6
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 1.3e-33 147.5 133 60.9
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 3.8e-33 146.0 154 53.9
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 2.4e-32 143.3 126 63.5
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 2.4e-32 143.3 126 63.5
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 3.2e-32 142.9 122 63.9
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 4.2e-32 142.5 89 76.4
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 5.4e-32 142.1 122 63.1
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 1.2e-31 141.0 122 63.1
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.3e-30 136.7 94 67.0
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.3e-30 136.7 94 67.0
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 3.6e-28 129.4 87 66.7
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 6.2e-28 128.6 89 70.8
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 1.4e-27 127.5 122 56.6
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 2.0e-26 123.6 97 56.7
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 9.9e-26 121.3 82 70.7
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 1.4e-24 117.5 71 77.5
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 2.3e-22 110.2 153 45.1
RcHm_v2.0_Chr1g0350151 Rosa chinensis HOM05D004449 ORTHO05D005473 3.9e-22 109.4 71 73.2
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 1.9e-21 107.1 171 33.9
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 2.4e-19 100.1 121 49.6
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 2.4e-11 73.6 42 73.8
SEGI_22783 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 4.5e-10 69.3 81 53.1
Rhsim07G0247200 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.0e-09 68.2 43 65.1
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 1.3e-09 67.8 81 54.3
SEGI_40272 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 1.3e-06 57.8 34 67.6
arahy.Tifrunner.gnm1.ann1.E2537D Arachis hypogaea HOM05D019151 ORTHO05D005473 6.7e-06 55.5 37 75.7
arahy.Tifrunner.gnm1.ann1.TG6NMP Arachis hypogaea HOM05D019151 ORTHO05D005473 6.7e-06 55.5 37 75.7


User provided reference genes

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