Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11728 Brassica carinata HOM05D006980 ORTHO05D008704 1.1e-190 669.8 339 100.0
BcaC02g11726 Brassica carinata HOM05D006980 ORTHO05D008704 5.2e-129 464.9 239 97.9
BcaB02g09370 Brassica carinata HOM05D006980 ORTHO05D008704 1.1e-102 377.5 374 62.0
BcaC02g11731 Brassica carinata HOM05D006980 ORTHO05D008704 4.6e-93 345.5 226 79.2
BcaB02g09372 Brassica carinata HOM05D006980 ORTHO05D008704 1.1e-86 324.3 279 64.5
BcaC02g11732 Brassica carinata HOM05D006980 ORTHO05D008704 1.5e-80 303.9 375 51.5
BolC4t22838H Brassica oleracea HOM05D006980 ORTHO05D008704 1.5e-80 303.9 375 51.5
C04p11900 Brassica napus HOM05D006980 ORTHO05D008704 7.1e-78 295.0 367 51.8
BraA05t19913Z Brassica rapa HOM05D006980 ORTHO05D008704 2.3e-76 290.0 384 49.2
A05p09600 Brassica napus HOM05D006980 ORTHO05D008704 4.8e-74 282.3 257 63.0
CARHR130480 Cardamine hirsuta HOM05D006980 ORTHO05D008704 2.2e-71 273.5 200 70.0
AL4G32340 Arabidopsis lyrata HOM05D006980 ORTHO05D008704 2.9e-71 273.1 206 68.9
AT2G36240 Arabidopsis thaliana HOM05D006980 ORTHO05D008704 3.5e-69 266.2 206 67.5
Sp4g18460 Schrenkiella parvula HOM05D006980 ORTHO05D008704 6.0e-69 265.4 206 65.5
THA.LOC104804920 Tarenaya hassleriana HOM05D006980 ORTHO05D008704 3.0e-68 263.1 211 66.4
Aa31LG5G21360 Aethionema arabicum HOM05D006980 ORTHO05D008704 9.7e-67 258.1 206 64.1
Thecc.05G089500 Theobroma cacao HOM05D006980 ORTHO05D008704 2.9e-55 219.9 372 37.9
COL.COLO4_29731 Corchorus olitorius HOM05D006980 ORTHO05D008704 5.5e-54 215.7 208 51.4
Thhalv10016603m.g Eutrema salsugineum HOM05D006980 ORTHO05D008704 5.1e-52 209.1 187 59.4
CAN.G137.42 Capsicum annuum HOM05D006980 ORTHO05D008704 5.7e-51 205.7 218 47.7
Manes.09G055100 Manihot esculenta HOM05D006980 ORTHO05D008704 9.7e-51 204.9 155 57.4
FAN05G0999 Fragaria x ananassa HOM05D006980 ORTHO05D008704 2.8e-50 203.4 219 49.3
Cc02_g28460 Coffea canephora HOM05D006980 ORTHO05D008704 3.7e-50 203.0 215 49.3
RcHm_v2.0_Chr3g0473791 Rosa chinensis HOM05D006980 ORTHO05D008704 4.8e-50 202.6 221 47.5
Duzib106G0372 Durio zibethinus HOM05D006980 ORTHO05D008704 2.4e-49 200.3 213 50.7
Prupe.7G109800 Prunus persica HOM05D006980 ORTHO05D008704 2.4e-49 200.3 207 50.2
Gorai.009G402600 Gossypium raimondii HOM05D006980 ORTHO05D008704 3.1e-49 199.9 213 48.8
QL07p038724 Quercus lobata HOM05D006980 ORTHO05D008704 4.1e-49 199.5 152 56.6
Nitab4.5_0003259g0020 Nicotiana tabacum HOM05D006980 ORTHO05D008704 4.5e-48 196.1 155 56.1
Atru.chr8.1533 Acer truncatum HOM05D006980 ORTHO05D008704 5.9e-48 195.7 156 55.8
Cpa.g.sc166.4 Carica papaya HOM05D006980 ORTHO05D008704 7.7e-48 195.3 206 50.5
Sed0006527 Sechium edule HOM05D006980 ORTHO05D008704 2.2e-47 193.7 209 47.8
CANSAT64G1568 Cannabis sativa HOM05D006980 ORTHO05D008704 3.8e-47 193.0 228 46.5
Peaxi162Scf00045g00156 Petunia axillaris HOM05D006980 ORTHO05D008704 3.8e-47 193.0 171 52.0
TPR.G19555 Trifolium pratense HOM05D006980 ORTHO05D008704 5.0e-47 192.6 155 55.5
Nitab4.5_0000025g0100 Nicotiana tabacum HOM05D006980 ORTHO05D008704 3.2e-46 189.9 171 50.9
Actinidia05428 Actinidia chinensis HOM05D006980 ORTHO05D008704 4.2e-46 189.5 215 47.4
QL07p038975 Quercus lobata HOM05D006980 ORTHO05D008704 4.2e-46 189.5 152 53.9
Cfa016610 Carpinus fangiana HOM05D006980 ORTHO05D008704 5.5e-46 189.1 215 46.0
Medtr7g104640 Medicago truncatula HOM05D006980 ORTHO05D008704 7.2e-46 188.7 155 54.8
arahy.Tifrunner.gnm1.ann1.3P0NFT Arachis hypogaea HOM05D006980 ORTHO05D008704 1.6e-45 187.6 155 53.5
CiPaw.09G014400 Carya illinoinensis HOM05D006980 ORTHO05D008704 1.6e-45 187.6 218 45.4
Migut.J01034 Erythranthe guttata HOM05D006980 ORTHO05D008704 1.6e-45 187.6 153 54.2
Dinv21206 Davidia involucrata HOM05D006980 ORTHO05D008704 2.1e-45 187.2 205 48.3
CSS0041599 Camellia sinensis var. sinensis HOM05D006980 ORTHO05D008704 2.7e-45 186.8 212 47.2
Oeu056884.1 Olea europaea HOM05D006980 ORTHO05D008704 2.7e-45 186.8 156 53.2
arahy.Tifrunner.gnm1.ann1.IK7M5W Arachis hypogaea HOM05D006980 ORTHO05D008704 4.7e-45 186.0 155 52.9
Potri.006G068700 Populus trichocarpa HOM05D006980 ORTHO05D008704 4.7e-45 186.0 179 49.2
TWI77G0642 Tripterygium wilfordii HOM05D006980 ORTHO05D008704 4.7e-45 186.0 200 47.5
Sc02g0000270 Simmondsia chinensis HOM05D006980 ORTHO05D008704 6.1e-45 185.7 210 45.7
SGA_v2.0_scaffold13G06715 Striga asiatica HOM05D006980 ORTHO05D008704 6.1e-45 185.7 153 53.6
Lsat_1_v5_gn_5_164841 Lactuca sativa HOM05D006980 ORTHO05D008704 8.0e-45 185.3 157 52.2
SHI12421 Sapria himalayana HOM05D006980 ORTHO05D008704 1.0e-44 184.9 156 52.6
CAN.G2030.1 Capsicum annuum HOM05D006980 ORTHO05D008704 1.4e-44 184.5 202 45.5
ClCG06G001250 Citrullus lanatus HOM05D006980 ORTHO05D008704 1.8e-44 184.1 142 55.6
Ciclev10011570m.g Citrus clementina HOM05D006980 ORTHO05D008704 2.3e-44 183.7 197 44.7
ECA248G2176 Erigeron canadensis HOM05D006980 ORTHO05D008704 2.3e-44 183.7 211 47.4
Lj1g0023344 Lotus japonicus HOM05D006980 ORTHO05D008704 2.3e-44 183.7 199 49.2
Rhsim03G0075000 Rhododendron simsii HOM05D006980 ORTHO05D008704 2.3e-44 183.7 159 54.1
SalBow3G1904 Salvia bowleyana HOM05D006980 ORTHO05D008704 2.3e-44 183.7 169 50.9
MSTRG.19261 Avicennia marina HOM05D006980 ORTHO05D008704 3.0e-44 183.3 206 47.1
HanXRQChr02g0032651 Helianthus annuus HOM05D006980 ORTHO05D008704 8.8e-44 181.8 154 51.9
PGR142G3286 Punica granatum HOM05D006980 ORTHO05D008704 1.1e-43 181.4 221 45.7
Ah.02g130100 Amaranthus hybridus HOM05D006980 ORTHO05D008704 2.0e-43 180.6 157 51.0
Lj2P137T25 Lonicera japonica HOM05D006980 ORTHO05D008704 2.0e-43 180.6 148 54.1
PGSC0003DMG401009543 Solanum tuberosum HOM05D006980 ORTHO05D008704 4.4e-43 179.5 202 44.1
TAR633G1277 Trochodendron aralioides HOM05D006980 ORTHO05D008704 7.4e-43 178.7 155 49.7
Solyc08g006170.1 Solanum lycopersicum HOM05D006980 ORTHO05D008704 9.7e-43 178.3 202 44.1
CsaV3_6G007180 Cucumis sativus L. HOM05D006980 ORTHO05D008704 3.7e-42 176.4 219 44.3
Sopen08g002140 Solanum pennellii HOM05D006980 ORTHO05D008704 3.7e-42 176.4 202 43.6
Aqoxy2G01180 Aquilegia oxysepala HOM05D006980 ORTHO05D008704 4.8e-42 176.0 155 49.7
MELO3C022409.2 Cucumis melo HOM05D006980 ORTHO05D008704 4.8e-42 176.0 226 44.7
AUR62005415 Chenopodium quinoa HOM05D006980 ORTHO05D008704 6.3e-42 175.6 263 40.3
EL10Ac6g13708 Beta vulgaris HOM05D006980 ORTHO05D008704 3.1e-41 173.3 154 50.6
PSO541G2622 Papaver somniferum HOM05D006980 ORTHO05D008704 5.3e-41 172.6 196 44.9
PSO675G7214 Papaver somniferum HOM05D006980 ORTHO05D008704 5.0e-39 166.0 194 43.3
Eucgr.G00971 Eucalyptus grandis HOM05D006980 ORTHO05D008704 8.5e-39 165.2 208 41.3
AUR62014076 Chenopodium quinoa HOM05D006980 ORTHO05D008704 1.5e-38 164.5 186 45.7
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 4.2e-38 162.9 180 46.1
ATR0051G062 Amborella trichopoda HOM05D006980 ORTHO05D008704 2.1e-37 160.6 180 43.9
Lalb_Chr20g0111701 Lupinus albus HOM05D006980 ORTHO05D008704 4.7e-37 159.5 194 47.4
Cc00_g27900 Coffea canephora HOM05D006980 ORTHO05D008704 4.0e-36 156.4 215 42.3
Nn6g34894 Nelumbo nucifera HOM05D006980 ORTHO05D008704 8.8e-36 155.2 120 54.2
Phvul.001G190300 Phaseolus vulgaris HOM05D006980 ORTHO05D008704 1.8e-33 147.5 184 41.8
SEGI_13947 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 1.6e-32 144.4 189 40.2
SEGI_40503 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 1.6e-32 144.4 189 40.2
Glyma.03G196000 Glycine max HOM05D006980 ORTHO05D008704 2.0e-32 144.1 128 50.8
Os01g0908800 Oryza sativa ssp. japonica HOM05D006980 ORTHO05D008704 5.9e-32 142.5 344 32.3
FAN02G3599 Fragaria x ananassa HOM05D006980 ORTHO05D008704 7.7e-32 142.1 107 59.8
VMungo1383G3509 Vigna mungo HOM05D006980 ORTHO05D008704 7.7e-32 142.1 173 41.6
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 2.5e-30 137.1 118 52.5
GSVIVG01029738001 Vitis vinifera HOM05D006980 ORTHO05D008704 1.2e-29 134.8 214 36.4
Eucgr.G00972 Eucalyptus grandis HOM05D006980 ORTHO05D008704 4.7e-29 132.9 199 37.7
HPP92_011900 Vanilla planifolia HOM05D006980 ORTHO05D008704 1.0e-28 131.7 160 39.4
AL53U10010 Arabidopsis lyrata HOM05D006980 ORTHO05D008704 6.8e-28 129.0 262 37.8
Haze_19614 Corylus avellana HOM05D006980 ORTHO05D008704 5.7e-27 125.9 107 51.4
Eucgr.G00976 Eucalyptus grandis HOM05D006980 ORTHO05D008704 1.3e-26 124.8 354 30.2
Sabra06G0051200 Salix brachista HOM05D006980 ORTHO05D008704 1.7e-26 124.4 107 50.5
Ca_09007_v3 Cicer arietinum L. HOM05D006980 ORTHO05D008704 2.2e-26 124.0 107 52.3
arahy.Tifrunner.gnm1.ann1.FQN2WV Arachis hypogaea HOM05D006980 ORTHO05D008704 5.9e-24 115.9 88 56.8
DCAR_013476 Daucus carota HOM05D006980 ORTHO05D008704 7.7e-24 115.5 87 54.0
GSVIVG01015930001 Vitis vinifera HOM05D006980 ORTHO05D008704 2.3e-23 114.0 250 33.2
Psat3g033240 Pisum sativum HOM05D006980 ORTHO05D008704 1.1e-22 111.7 107 49.5
Zm00001eb365120 Zea mays HOM05D006980 ORTHO05D008704 1.8e-17 94.4 187 35.3
Carub.0004s1800 Capsella rubella HOM05D006980 ORTHO05D008704 2.9e-15 87.0 53 77.4
Zm00001eb434610 Zea mays HOM05D006980 ORTHO05D008704 2.9e-10 70.5 98 35.7
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 8.3e-10 68.9 210 28.1
Zm00001eb303860 Zea mays HOM05D003514 ORTHO05D004280 7.0e-09 65.9 136 30.9
FvH4_4g07830 Fragaria vesca HOM05D002986 ORTHO05D007611 3.5e-08 63.5 178 26.4
BcaC06g36288 Brassica carinata HOM05D006556 ORTHO05D008146 7.8e-08 62.4 288 24.3
COL.COLO4_22110 Corchorus olitorius HOM05D000891 ORTHO05D000761 7.8e-08 62.4 168 28.6
FAN16G0081 Fragaria x ananassa HOM05D002986 ORTHO05D007611 1.7e-07 61.2 178 25.8
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 1.7e-07 61.2 227 31.3
CiPaw.10G052700 Carya illinoinensis HOM05D002986 ORTHO05D007611 2.3e-07 60.8 214 25.7
Dinv17357 Davidia involucrata HOM05D002986 ORTHO05D007611 2.3e-07 60.8 178 27.5
FAN25G0667 Fragaria x ananassa HOM05D002986 ORTHO05D007611 2.3e-07 60.8 180 25.6
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 3.9e-07 60.1 140 34.3
FAN07G2492 Fragaria x ananassa HOM05D002986 ORTHO05D007611 6.6e-07 59.3 178 25.8
FvH4_6g18780 Fragaria vesca HOM05D006980 ORTHO05D008704 1.9e-06 57.8 46 58.7
FAN14G4048 Fragaria x ananassa HOM05D006980 ORTHO05D008704 1.9e-06 57.8 46 58.7
Cpa.g.sc8.109 Carica papaya HOM05D007486 ORTHO05D003673 2.5e-06 57.4 363 21.2
CAN.G1003.15 Capsicum annuum HOM05D007172 ORTHO05D009267 3.3e-06 57.0 185 23.8
Cpa.g.sc64.144 Carica papaya HOM05D000424 ORTHO05D000355 3.3e-06 57.0 174 28.2
GSVIVG01027435001 Vitis vinifera HOM05D004271 ORTHO05D006011 4.3e-06 56.6 215 25.6
Nitab4.5_0000008g0800 Nicotiana tabacum HOM05D007172 ORTHO05D009267 5.6e-06 56.2 156 26.9
Rhsim10G0182600 Rhododendron simsii HOM05D000001 ORTHO05D010426 5.6e-06 56.2 148 29.7
FAN05G0477 Fragaria x ananassa HOM05D006980 ORTHO05D008704 7.3e-06 55.8 46 54.3
ATR0907G005 Amborella trichopoda HOM05D007661 ORTHO05D009671 9.5e-06 55.5 174 25.3
PGR102G1884 Punica granatum HOM05D007173 ORTHO05D009151 9.5e-06 55.5 232 25.9


User provided reference genes

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