Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 1.3e-177 626.3 317 100.0
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 1.5e-162 576.2 292 99.0
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 9.7e-154 547.0 292 94.5
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 1.3e-153 546.6 323 87.9
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 9.8e-146 520.4 292 91.1
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 5.0e-142 508.1 292 88.7
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 4.7e-140 501.5 317 82.6
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 6.1e-140 501.1 292 88.7
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 1.3e-137 493.4 292 85.6
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 7.0e-136 487.6 293 86.3
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 1.0e-134 483.8 293 86.0
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 2.3e-134 482.6 292 84.6
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 2.9e-134 482.3 293 85.7
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 2.9e-134 482.3 293 84.3
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 3.8e-134 481.9 294 85.0
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 1.5e-133 479.9 293 85.3
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 7.3e-133 477.6 293 84.0
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 4.7e-132 474.9 294 84.4
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 7.3e-125 451.1 322 76.7
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 2.8e-124 449.1 229 99.1
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 7.8e-119 431.0 295 75.9
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 1.1e-112 410.6 297 71.0
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 3.2e-112 409.1 251 80.5
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 9.2e-112 407.5 260 80.0
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 1.6e-111 406.8 290 73.1
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 2.7e-111 406.0 251 80.5
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 4.6e-111 405.2 296 72.0
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 6.0e-111 404.8 263 78.7
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 1.3e-110 403.7 287 74.2
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 1.3e-110 403.7 292 71.6
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 3.9e-110 402.1 253 79.8
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 3.9e-110 402.1 253 79.4
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 8.6e-110 401.0 258 79.1
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 1.5e-109 400.2 253 79.1
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 1.5e-109 400.2 249 79.1
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 1.5e-109 400.2 249 79.1
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 3.3e-109 399.1 249 80.7
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 5.6e-109 398.3 256 77.3
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 1.2e-108 397.1 275 74.9
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 2.1e-108 396.4 252 79.8
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 2.1e-108 396.4 274 74.1
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 6.2e-108 394.8 253 79.1
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 6.2e-108 394.8 249 80.7
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 8.1e-108 394.4 270 75.6
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 3.1e-107 392.5 253 77.5
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 4.0e-107 392.1 280 74.6
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 5.2e-107 391.7 292 69.2
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 5.2e-107 391.7 292 69.2
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 6.8e-107 391.3 256 76.2
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 1.2e-106 390.6 248 80.2
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 1.5e-106 390.2 292 69.9
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 1.5e-106 390.2 256 76.6
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 1.5e-106 390.2 272 73.9
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 1.5e-106 390.2 279 73.1
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 5.8e-106 388.3 250 78.0
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 7.6e-106 387.9 256 76.2
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 9.9e-106 387.5 243 80.7
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 9.9e-106 387.5 251 78.1
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 1.7e-105 386.7 253 77.1
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.7e-105 386.7 297 69.7
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 2.9e-105 386.0 242 81.0
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 8.4e-105 384.4 250 77.6
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 8.4e-105 384.4 250 77.6
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 8.4e-105 384.4 282 69.9
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.1e-104 384.0 282 71.3
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 1.1e-104 384.0 249 76.7
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 1.1e-104 384.0 270 75.2
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 1.4e-104 383.6 279 72.0
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 1.9e-104 383.3 250 77.6
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 1.9e-104 383.3 249 77.1
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 2.4e-104 382.9 297 68.7
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 2.4e-104 382.9 256 73.8
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 3.2e-104 382.5 312 66.7
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 3.2e-104 382.5 312 66.7
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 3.2e-104 382.5 248 76.6
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 7.1e-104 381.3 251 74.5
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 7.1e-104 381.3 250 77.2
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 1.6e-103 380.2 292 65.8
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 2.1e-103 379.8 256 73.4
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 2.3e-102 376.3 250 74.8
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 3.9e-102 375.6 258 74.4
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 3.9e-102 375.6 248 74.6
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 5.1e-102 375.2 291 67.7
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 6.6e-102 374.8 249 75.1
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 6.6e-102 374.8 256 72.7
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 1.5e-101 373.6 283 67.1
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.9e-101 373.2 250 74.4
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 2.5e-101 372.9 272 70.2
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 7.3e-101 371.3 303 64.0
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 1.2e-100 370.5 267 70.8
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 6.2e-100 368.2 248 75.4
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 1.4e-99 367.1 248 71.8
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 3.1e-99 365.9 275 66.9
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 1.5e-98 363.6 250 74.4
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 2.0e-98 363.2 226 78.8
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 2.2e-97 359.8 231 77.9
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 4.2e-96 355.5 247 71.7
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 2.1e-95 353.2 238 75.6
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 3.5e-95 352.4 251 72.5
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 1.3e-92 344.0 232 72.0
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 1.8e-91 340.1 216 77.8
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 6.9e-91 338.2 247 68.0
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 2.6e-90 336.3 276 64.1
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 5.8e-90 335.1 260 65.0
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 9.9e-90 334.3 296 62.2
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 6.4e-89 331.6 210 76.7
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 8.4e-89 331.3 350 54.3
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 4.2e-88 328.9 216 76.9
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 1.6e-87 327.0 246 66.3
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 1.8e-86 323.6 249 68.7
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 2.5e-85 319.7 246 64.2
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 9.6e-85 317.8 245 67.3
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 1.1e-83 314.3 241 66.8
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 3.1e-83 312.8 244 66.4
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 1.5e-82 310.5 193 86.0
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 1.9e-80 303.5 257 64.2
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 9.3e-80 301.2 245 63.3
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 2.1e-79 300.1 233 68.2
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 1.5e-77 293.9 255 60.4
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 1.8e-75 287.0 244 58.6
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 3.2e-72 276.2 254 60.2
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 4.2e-72 275.8 294 56.1
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 5.1e-70 268.9 184 70.7
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 7.4e-69 265.0 184 70.1
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 2.8e-68 263.1 161 81.4
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 5.0e-65 252.3 155 80.6
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.9e-64 250.4 221 61.1
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 3.9e-62 242.7 171 71.3
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 3.1e-59 233.0 173 69.9
BcaC02g11730 Brassica carinata HOM05D004449 ORTHO05D005473 1.2e-58 231.1 113 100.0
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 6.7e-54 215.3 166 70.5
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 1.8e-51 207.2 244 44.7
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 2.5e-48 196.8 125 77.6
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 2.5e-48 196.8 132 74.2
ECA233G4866 Erigeron canadensis HOM05D004449 ORTHO05D005473 2.6e-45 186.8 109 83.5
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 3.0e-38 163.3 106 76.4
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 1.5e-37 161.0 127 65.4
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 7.5e-37 158.7 99 80.8
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 7.5e-37 158.7 99 80.8
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 1.3e-36 157.9 109 71.6
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 2.8e-36 156.8 95 81.1
SEGI_28293 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 2.4e-35 153.7 110 67.3
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 1.3e-33 147.9 130 53.8
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 2.3e-30 137.1 193 42.0
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 4.0e-30 136.3 195 42.6
COL.COLO4_29730 Corchorus olitorius HOM05D004449 ORTHO05D005473 1.2e-29 134.8 149 53.0
Os05g0400800 Oryza sativa ssp. japonica HOM05D004449 ORTHO05D005473 5.7e-29 132.5 106 66.0
RcHm_v2.0_Chr1g0350151 Rosa chinensis HOM05D004449 ORTHO05D005473 9.8e-29 131.7 89 70.8
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 1.1e-27 128.3 139 51.1
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 7.0e-27 125.6 126 54.8
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 7.2e-24 115.5 94 63.8
Lalb_Chr06g0172371 Lupinus albus HOM05D004449 ORTHO05D005473 1.6e-23 114.4 70 82.9
Rhsim07G0247200 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.7e-17 94.4 65 63.1
Rhsim09G0019600 Rhododendron simsii HOM05D004449 ORTHO05D005473 5.6e-16 89.4 70 65.7
Sabra04G0060800 Salix brachista HOM05D004449 ORTHO05D005473 1.6e-15 87.8 196 36.7
SEGI_22783 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 1.8e-14 84.3 54 79.6
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 5.2e-14 82.8 54 81.5
RcHm_v2.0_Chr4g0409701 Rosa chinensis HOM05D004449 ORTHO05D005473 2.0e-13 80.9 46 82.6
arahy.Tifrunner.gnm1.ann1.E2537D Arachis hypogaea HOM05D019151 ORTHO05D005473 1.8e-06 57.8 71 49.3
arahy.Tifrunner.gnm1.ann1.TG6NMP Arachis hypogaea HOM05D019151 ORTHO05D005473 1.8e-06 57.8 71 49.3
SEGI_40272 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 1.8e-06 57.8 34 67.6


User provided reference genes

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