Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11672 Brassica carinata HOM05D003603 ORTHO05D004186 9.7e-83 310.1 154 100.0
BcaC02g11674 Brassica carinata HOM05D003603 ORTHO05D004186 1.4e-81 306.2 154 99.4
BraA05t19955Z Brassica rapa HOM05D003603 ORTHO05D004186 3.1e-52 208.8 144 77.8
A05p10140 Brassica napus HOM05D003603 ORTHO05D004186 1.5e-51 206.5 144 77.1
BcaB02g09414 Brassica carinata HOM05D003603 ORTHO05D004186 1.9e-46 189.5 135 73.3
Sp4g17800 Schrenkiella parvula HOM05D003603 ORTHO05D004186 1.1e-41 173.7 150 64.7
C04p64400 Brassica napus HOM05D003603 ORTHO05D004186 1.6e-37 159.8 156 59.6
BolC4t27924H Brassica oleracea HOM05D003603 ORTHO05D004186 1.6e-37 159.8 156 59.6
BcaNung07274 Brassica carinata HOM05D003603 ORTHO05D004186 8.1e-37 157.5 152 60.5
A04p26990 Brassica napus HOM05D003603 ORTHO05D004186 3.1e-36 155.6 157 58.6
BraA04t18200Z Brassica rapa HOM05D003603 ORTHO05D004186 3.1e-36 155.6 157 58.6
Thhalv10017363m.g Eutrema salsugineum HOM05D003603 ORTHO05D004186 1.5e-35 153.3 146 58.2
C04p12550 Brassica napus HOM05D003603 ORTHO05D004186 3.4e-35 152.1 74 100.0
C04p12530 Brassica napus HOM05D003603 ORTHO05D004186 4.9e-34 148.3 74 98.6
Carub.0004s1726 Capsella rubella HOM05D003603 ORTHO05D004186 1.1e-33 147.1 146 57.5
CARHR129770 Cardamine hirsuta HOM05D003603 ORTHO05D004186 1.1e-33 147.1 145 55.9
AL4G31620 Arabidopsis lyrata HOM05D003603 ORTHO05D004186 7.1e-33 144.4 146 56.2
BcaC05g27937 Brassica carinata HOM05D003603 ORTHO05D004186 4.0e-28 128.6 140 52.9
C05p39410 Brassica napus HOM05D003603 ORTHO05D004186 4.0e-28 128.6 140 52.9
BolC5t32678H Brassica oleracea HOM05D003603 ORTHO05D004186 4.0e-28 128.6 140 52.9
A05p25320 Brassica napus HOM05D003603 ORTHO05D004186 1.2e-27 127.1 140 52.1
BraA05t21417Z Brassica rapa HOM05D003603 ORTHO05D004186 1.2e-27 127.1 140 52.1
Thecc.03G312100 Theobroma cacao HOM05D003603 ORTHO05D004186 1.2e-27 127.1 142 50.0
Sp1g27670 Schrenkiella parvula HOM05D003603 ORTHO05D004186 2.0e-27 126.3 145 50.3
THA.LOC104798506 Tarenaya hassleriana HOM05D003603 ORTHO05D004186 4.4e-27 125.2 141 50.4
AT1G31940 Arabidopsis thaliana HOM05D003603 ORTHO05D004186 7.6e-27 124.4 141 51.1
Carub.0001s3027 Capsella rubella HOM05D003603 ORTHO05D004186 2.9e-26 122.5 141 51.1
CARHR031290 Cardamine hirsuta HOM05D003603 ORTHO05D004186 3.8e-26 122.1 141 51.1
RcHm_v2.0_Chr7g0212381 Rosa chinensis HOM05D003603 ORTHO05D004186 1.1e-25 120.6 142 45.8
BolC4t22900H Brassica oleracea HOM05D003603 ORTHO05D004186 3.2e-25 119.0 55 98.2
FvH4_5g23370 Fragaria vesca HOM05D003603 ORTHO05D004186 7.1e-25 117.9 145 44.8
FAN08G0102 Fragaria x ananassa HOM05D003603 ORTHO05D004186 7.1e-25 117.9 145 44.8
FAN18G1056 Fragaria x ananassa HOM05D003603 ORTHO05D004186 7.1e-25 117.9 145 44.8
FAN18G2371 Fragaria x ananassa HOM05D003603 ORTHO05D004186 7.1e-25 117.9 145 44.8
Lj2g0008166 Lotus japonicus HOM05D003603 ORTHO05D004186 9.3e-25 117.5 142 45.8
Aa31LG9G15610 Aethionema arabicum HOM05D003603 ORTHO05D004186 1.2e-24 117.1 147 48.3
A09p34230 Brassica napus HOM05D003603 ORTHO05D004186 1.2e-24 117.1 137 51.1
BraA09t38971Z Brassica rapa HOM05D003603 ORTHO05D004186 1.2e-24 117.1 137 51.1
Manes.15G192766 Manihot esculenta HOM05D003603 ORTHO05D004186 1.2e-24 117.1 142 45.8
COL.COLO4_16913 Corchorus olitorius HOM05D003603 ORTHO05D004186 1.6e-24 116.7 149 44.3
FAN04G2484 Fragaria x ananassa HOM05D003603 ORTHO05D004186 1.6e-24 116.7 145 44.1
Aa31LG2G14110 Aethionema arabicum HOM05D003603 ORTHO05D004186 2.1e-24 116.3 146 45.9
BcaB03g13776 Brassica carinata HOM05D003603 ORTHO05D004186 2.1e-24 116.3 140 51.4
Thhalv10008962m.g Eutrema salsugineum HOM05D003603 ORTHO05D004186 2.1e-24 116.3 142 50.0
Prupe.5G026000 Prunus persica HOM05D003603 ORTHO05D004186 2.1e-24 116.3 142 45.1
AL1G46040 Arabidopsis lyrata HOM05D003603 ORTHO05D004186 2.7e-24 115.9 139 49.6
arahy.Tifrunner.gnm1.ann1.JMHQ16 Arachis hypogaea HOM05D003603 ORTHO05D004186 2.7e-24 115.9 142 47.2
arahy.Tifrunner.gnm1.ann1.Z69TJ6 Arachis hypogaea HOM05D003603 ORTHO05D004186 2.7e-24 115.9 142 47.2
Sabra01G0104400 Salix brachista HOM05D003603 ORTHO05D004186 2.7e-24 115.9 142 45.1
VMungo1215G0432 Vigna mungo HOM05D003603 ORTHO05D004186 2.7e-24 115.9 143 46.2
FAN13G0864 Fragaria x ananassa HOM05D003603 ORTHO05D004186 3.5e-24 115.5 145 44.1
Potri.001G135000 Populus trichocarpa HOM05D003603 ORTHO05D004186 3.5e-24 115.5 142 45.1
BcaC05g27220 Brassica carinata HOM05D003603 ORTHO05D004186 7.8e-24 114.4 136 50.7
BolC5t31853H Brassica oleracea HOM05D003603 ORTHO05D004186 7.8e-24 114.4 136 50.7
Duzib068G0284 Durio zibethinus HOM05D003603 ORTHO05D004186 1.0e-23 114.0 142 45.8
Lalb_Chr16g0380941 Lupinus albus HOM05D003603 ORTHO05D004186 1.3e-23 113.6 143 44.8
Glyma.01G010900 Glycine max HOM05D003603 ORTHO05D004186 1.7e-23 113.2 143 45.5
MD06G1024900 Malus domestica HOM05D003603 ORTHO05D004186 1.7e-23 113.2 142 45.1
Phvul.002G133800 Phaseolus vulgaris HOM05D003603 ORTHO05D004186 1.7e-23 113.2 143 45.5
CANSAT21G0457 Cannabis sativa HOM05D003603 ORTHO05D004186 3.0e-23 112.5 142 45.8
CANSAT56G3990 Cannabis sativa HOM05D003603 ORTHO05D004186 3.0e-23 112.5 142 45.8
Glyma.09G210200 Glycine max HOM05D003603 ORTHO05D004186 3.0e-23 112.5 143 44.8
Lalb_Chr05g0215661 Lupinus albus HOM05D003603 ORTHO05D004186 6.6e-23 111.3 143 46.9
Actinidia01335 Actinidia chinensis HOM05D003603 ORTHO05D004186 1.9e-22 109.8 142 47.2
Ciclev10002760m.g Citrus clementina HOM05D003603 ORTHO05D004186 2.5e-22 109.4 147 44.2
Gohir.A03G000024 Gossypium hirsutum HOM05D003603 ORTHO05D004186 2.5e-22 109.4 149 47.7
Atru.chr6.1552 Acer truncatum HOM05D003603 ORTHO05D004186 3.3e-22 109.0 143 45.5
GSVIVG01013000001 Vitis vinifera HOM05D003603 ORTHO05D004186 4.3e-22 108.6 146 43.2
Manes.17G016002 Manihot esculenta HOM05D003603 ORTHO05D004186 7.3e-22 107.8 146 41.8
Dinv29021 Davidia involucrata HOM05D003603 ORTHO05D004186 9.6e-22 107.5 143 43.4
TWI81G0448 Tripterygium wilfordii HOM05D003603 ORTHO05D004186 9.6e-22 107.5 141 44.7
TWI15G1018 Tripterygium wilfordii HOM05D003603 ORTHO05D004186 2.8e-21 105.9 144 43.8
QL12p000179 Quercus lobata HOM05D003603 ORTHO05D004186 3.6e-21 105.5 175 37.1
Actinidia29278 Actinidia chinensis HOM05D003603 ORTHO05D004186 8.1e-21 104.4 144 45.1
Gohir.D03G177000 Gossypium hirsutum HOM05D003603 ORTHO05D004186 8.1e-21 104.4 141 48.2
Eucgr.D02636 Eucalyptus grandis HOM05D003603 ORTHO05D004186 1.4e-20 103.6 142 43.7
Dinv06911 Davidia involucrata HOM05D003603 ORTHO05D004186 2.4e-20 102.8 146 42.5
SGA_v2.0_scaffold96G29046 Striga asiatica HOM05D003603 ORTHO05D004186 2.4e-20 102.8 146 43.8
ECA233G2030 Erigeron canadensis HOM05D003603 ORTHO05D004186 5.3e-20 101.7 146 44.5
BcaB07g32857 Brassica carinata HOM05D003603 ORTHO05D004186 9.0e-20 100.9 129 48.8
Gohir.A11G028400 Gossypium hirsutum HOM05D003603 ORTHO05D004186 2.0e-19 99.8 139 45.3
Medtr5g027940 Medicago truncatula HOM05D003603 ORTHO05D004186 2.6e-19 99.4 139 41.7
CSS0011703 Camellia sinensis var. sinensis HOM05D003603 ORTHO05D004186 3.4e-19 99.0 144 44.4
Gorai.007G033700 Gossypium raimondii HOM05D003603 ORTHO05D004186 4.4e-19 98.6 139 44.6
Gohir.D11G030800 Gossypium hirsutum HOM05D003603 ORTHO05D004186 5.8e-19 98.2 139 44.6
PGR031G2143 Punica granatum HOM05D003603 ORTHO05D004186 5.8e-19 98.2 142 42.3
MSTRG.25700 Avicennia marina HOM05D003603 ORTHO05D004186 7.6e-19 97.8 147 40.1
CiPaw.12G069800 Carya illinoinensis HOM05D003603 ORTHO05D004186 7.6e-19 97.8 137 42.3
TAR636G1298 Trochodendron aralioides HOM05D003603 ORTHO05D004186 7.6e-19 97.8 142 39.4
Ca_25158_v3 Cicer arietinum L. HOM05D003603 ORTHO05D004186 9.9e-19 97.4 140 42.9
CSS0028298 Camellia sinensis var. sinensis HOM05D003603 ORTHO05D004186 1.3e-18 97.1 148 41.9
MBI04_g20981_MAGBIO Magnolia biondii HOM05D003603 ORTHO05D004186 1.3e-18 97.1 143 41.3
MSTRG.1790 Avicennia marina HOM05D003603 ORTHO05D004186 2.2e-18 96.3 144 41.0
Nn1g01903 Nelumbo nucifera HOM05D003603 ORTHO05D004186 2.9e-18 95.9 141 40.4
PSO063G1743 Papaver somniferum HOM05D003603 ORTHO05D004186 2.9e-18 95.9 142 40.1
TPR.G19474 Trifolium pratense HOM05D003603 ORTHO05D004186 2.9e-18 95.9 140 41.4
TAR375G0833 Trochodendron aralioides HOM05D003603 ORTHO05D004186 2.9e-18 95.9 142 38.7
Oeu017100.1 Olea europaea HOM05D003603 ORTHO05D004186 4.9e-18 95.1 136 44.1
PGSC0003DMG400009296 Solanum tuberosum HOM05D003603 ORTHO05D004186 1.4e-17 93.6 140 41.4
Peaxi162Scf00185g01122 Petunia axillaris HOM05D003603 ORTHO05D004186 1.9e-17 93.2 135 40.7
CSS0006858 Camellia sinensis var. sinensis HOM05D003603 ORTHO05D004186 2.4e-17 92.8 148 42.6
PSO782G4801 Papaver somniferum HOM05D003603 ORTHO05D004186 3.2e-17 92.4 142 40.1
Peaxi162Scf00052g00329 Petunia axillaris HOM05D003603 ORTHO05D004186 3.2e-17 92.4 139 42.4
Cc08_g03850 Coffea canephora HOM05D003603 ORTHO05D004186 4.2e-17 92.0 140 42.1
Sopen08g024820 Solanum pennellii HOM05D003603 ORTHO05D004186 4.2e-17 92.0 140 40.7
Aqoxy3G02143 Aquilegia oxysepala HOM05D003603 ORTHO05D004186 5.4e-17 91.7 142 38.0
Solyc08g076180.3 Solanum lycopersicum HOM05D003603 ORTHO05D004186 5.4e-17 91.7 140 40.7
Psat2g140080 Pisum sativum HOM05D003603 ORTHO05D004186 1.2e-16 90.5 141 39.7
DCAR_004264 Daucus carota HOM05D003603 ORTHO05D004186 2.1e-16 89.7 147 42.2
SalBow8G3962 Salvia bowleyana HOM05D003603 ORTHO05D004186 2.1e-16 89.7 147 40.8
Hma1.2p1_1819F.1_g304070 Hydrangea macrophylla HOM05D003603 ORTHO05D004186 2.7e-16 89.4 137 40.1
Lj8A318T46 Lonicera japonica HOM05D003603 ORTHO05D004186 2.7e-16 89.4 151 43.0
Nn3g19353 Nelumbo nucifera HOM05D003603 ORTHO05D004186 2.7e-16 89.4 139 36.7
Nitab4.5_0005370g0020 Nicotiana tabacum HOM05D003603 ORTHO05D004186 2.7e-16 89.4 140 41.4
Lsat_1_v5_gn_6_17681 Lactuca sativa HOM05D003603 ORTHO05D004186 4.6e-16 88.6 150 39.3
Hund11105 Selenicereus undatus HOM05D003603 ORTHO05D004186 4.6e-16 88.6 144 41.0
Ah.12g055980 Amaranthus hybridus HOM05D003603 ORTHO05D004186 7.9e-16 87.8 147 40.1
AUR62007409 Chenopodium quinoa HOM05D003603 ORTHO05D004186 7.9e-16 87.8 121 43.8
SalBow1G3570 Salvia bowleyana HOM05D003603 ORTHO05D004186 7.9e-16 87.8 148 43.9
SalBow1G4269 Salvia bowleyana HOM05D003603 ORTHO05D004186 7.9e-16 87.8 148 43.9
AUR62027323 Chenopodium quinoa HOM05D003603 ORTHO05D004186 1.0e-15 87.4 124 43.5
MELO3C013813.2 Cucumis melo HOM05D003603 ORTHO05D004186 1.0e-15 87.4 147 40.8
Hma1.2p1_0803F.1_g220845 Hydrangea macrophylla HOM05D003603 ORTHO05D004186 1.0e-15 87.4 145 40.7
Hma1.2p1_0803F.1_g220850 Hydrangea macrophylla HOM05D003603 ORTHO05D004186 1.0e-15 87.4 145 40.7
CsaV3_3G001240 Cucumis sativus L. HOM05D003603 ORTHO05D004186 1.7e-15 86.7 135 43.0
DCAR_008204 Daucus carota HOM05D003603 ORTHO05D004186 1.7e-15 86.7 150 40.7
Migut.A00590 Erythranthe guttata HOM05D003603 ORTHO05D004186 1.7e-15 86.7 136 41.2
THA.LOC104814407 Tarenaya hassleriana HOM05D003603 ORTHO05D004186 1.7e-15 86.7 143 39.9
Lsat_1_v5_gn_6_73320 Lactuca sativa HOM05D003603 ORTHO05D004186 2.3e-15 86.3 143 39.9
Ah.07g201360 Amaranthus hybridus HOM05D003603 ORTHO05D004186 3.0e-15 85.9 149 37.6
EL10Ac5g11930 Beta vulgaris HOM05D003603 ORTHO05D004186 3.9e-15 85.5 152 37.5
ECA240G0026 Erigeron canadensis HOM05D003584 ORTHO05D004148 3.9e-15 85.5 149 38.3
Nitab4.5_0000301g0080 Nicotiana tabacum HOM05D003603 ORTHO05D004186 6.6e-15 84.7 140 40.7
Rhsim11G0028200 Rhododendron simsii HOM05D003603 ORTHO05D004186 6.6e-15 84.7 137 39.4
Sed0026512 Sechium edule HOM05D003603 ORTHO05D004186 1.5e-14 83.6 137 41.6
Zm00001eb251500 Zea mays HOM05D003603 ORTHO05D004186 1.5e-14 83.6 123 40.7
Gorai.003G186200 Gossypium raimondii HOM05D003080 ORTHO05D003601 1.9e-14 83.2 108 48.1
Os02g0697700 Oryza sativa ssp. japonica HOM05D003603 ORTHO05D004186 1.9e-14 83.2 118 42.4
HanXRQChr03g0082031 Helianthus annuus HOM05D003603 ORTHO05D004186 2.5e-14 82.8 142 38.7
HanXRQChr13g0404821 Helianthus annuus HOM05D003603 ORTHO05D004186 2.5e-14 82.8 140 40.0
SGA_v2.0_scaffold111G31383 Striga asiatica HOM05D003603 ORTHO05D004186 2.5e-14 82.8 132 38.6
C05p31290 Brassica napus HOM05D003603 ORTHO05D004186 3.3e-14 82.4 147 39.5
Hund14334 Selenicereus undatus HOM05D003603 ORTHO05D004186 3.3e-14 82.4 153 37.3
CAN.G474.26 Capsicum annuum HOM05D003603 ORTHO05D004186 1.3e-13 80.5 139 36.7
Migut.E01327 Erythranthe guttata HOM05D003603 ORTHO05D004186 2.8e-13 79.3 149 38.9
Sc07g0008400 Simmondsia chinensis HOM05D003603 ORTHO05D004186 3.6e-13 79.0 144 36.1
Oeu027879.1 Olea europaea HOM05D003603 ORTHO05D004186 1.4e-12 77.0 167 34.7
Nitab4.5_0001632g0070 Nicotiana tabacum HOM05D003603 ORTHO05D004186 4.0e-12 75.5 138 35.5
Nitab4.5_0002429g0050 Nicotiana tabacum HOM05D003603 ORTHO05D004186 5.3e-12 75.1 139 35.3
ATR0598G345 Amborella trichopoda HOM05D003603 ORTHO05D004186 9.0e-12 74.3 138 32.6
ATR0829G136 Amborella trichopoda HOM05D003603 ORTHO05D004186 1.5e-11 73.6 137 35.0
HPP92_005435 Vanilla planifolia HOM05D003603 ORTHO05D004186 2.6e-11 72.8 136 35.3
HPP92_005441 Vanilla planifolia HOM05D003603 ORTHO05D004186 2.6e-11 72.8 136 35.3
HPP92_014701 Vanilla planifolia HOM05D003603 ORTHO05D004186 9.9e-11 70.9 141 36.2
ClCG10G001200 Citrullus lanatus HOM05D003603 ORTHO05D004186 2.9e-10 69.3 117 39.3
vmacro00238 Vaccinium macrocarpon HOM05D003603 ORTHO05D004186 2.9e-10 69.3 204 28.9
Sopen06g021730 Solanum pennellii HOM05D003603 ORTHO05D004186 8.4e-10 67.8 137 34.3
Solyc06g066290.3 Solanum lycopersicum HOM05D003603 ORTHO05D004186 1.4e-09 67.0 138 36.2
PGSC0003DMG400016765 Solanum tuberosum HOM05D003603 ORTHO05D004186 1.4e-09 67.0 138 37.0
CDE06G0200 Ceratophyllum demersum HOM05D003603 ORTHO05D004186 3.2e-09 65.9 109 38.5
CDE03G0025 Ceratophyllum demersum HOM05D003603 ORTHO05D004186 1.6e-08 63.5 84 41.7
SEGI_08166 Sequoiadendron giganteum HOM05D003603 ORTHO05D004186 2.1e-08 63.2 113 37.2
SEGI_33169 Sequoiadendron giganteum HOM05D003603 ORTHO05D004186 2.1e-08 63.2 113 37.2
Rhsim07G0134300 Rhododendron simsii HOM05D003603 ORTHO05D004186 2.7e-08 62.8 217 29.5
AT2G35585 Arabidopsis thaliana HOM05D003603 ORTHO05D004186 3.9e-07 58.9 58 50.0
QL07p005886 Quercus lobata HOM05D003603 ORTHO05D004186 5.1e-07 58.5 58 46.6
Duzib205G1823 Durio zibethinus HOM05D003603 ORTHO05D004186 2.5e-06 56.2 58 46.6
Cfa012536 Carpinus fangiana HOM05D003603 ORTHO05D004186 7.4e-06 54.7 56 48.2


User provided reference genes

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