Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 8.6e-108 393.7 197 100.0
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 8.6e-108 393.7 197 100.0
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 8.6e-108 393.7 197 100.0
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 3.1e-97 358.6 197 90.9
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 3.1e-97 358.6 197 90.9
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 8.3e-95 350.5 199 88.9
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 3.7e-87 325.1 195 82.6
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 6.8e-81 304.3 197 77.2
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 8.3e-79 297.4 198 77.3
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 3.9e-76 288.5 198 74.7
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 1.6e-74 283.1 198 72.2
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 6.2e-74 281.2 200 72.0
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 1.9e-62 243.0 198 66.2
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 4.6e-61 238.4 203 60.6
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 8.7e-60 234.2 203 62.1
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 1.5e-59 233.4 205 62.4
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 4.3e-59 231.9 202 59.9
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 2.1e-58 229.6 205 59.0
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 2.8e-58 229.2 202 63.4
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 1.8e-57 226.5 202 63.4
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 1.8e-57 226.5 202 63.4
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 1.2e-56 223.8 202 62.9
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 3.4e-56 222.2 204 60.3
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 4.9e-55 218.4 202 60.9
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 4.9e-55 218.4 202 60.9
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 8.4e-55 217.6 202 59.4
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 2.1e-53 213.0 200 53.0
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 2.3e-52 209.5 198 56.1
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 5.1e-52 208.4 201 55.7
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 5.6e-51 204.9 199 54.8
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 6.2e-50 201.4 196 53.1
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 4.0e-49 198.7 203 51.2
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 6.9e-49 198.0 203 51.7
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 6.9e-49 198.0 203 51.7
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 6.9e-49 198.0 201 52.2
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 1.2e-48 197.2 199 52.3
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 2.6e-48 196.1 199 54.3
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.6e-48 196.1 197 53.8
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 3.4e-48 195.7 200 52.5
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 5.8e-48 194.9 197 53.3
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 7.6e-48 194.5 196 51.0
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.0e-47 194.1 203 50.7
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 1.3e-47 193.7 197 53.8
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 1.3e-47 193.7 204 50.5
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 2.2e-47 193.0 216 49.5
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 2.9e-47 192.6 208 51.9
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.8e-47 192.2 203 49.8
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 6.5e-47 191.4 202 52.0
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 8.4e-47 191.0 210 50.0
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 1.4e-46 190.3 202 49.0
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 1.9e-46 189.9 209 50.7
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.9e-46 189.9 203 49.8
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 1.9e-46 189.9 201 49.3
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 2.5e-46 189.5 203 52.2
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 5.5e-46 188.3 199 48.2
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 7.1e-46 188.0 210 49.5
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 7.1e-46 188.0 207 51.2
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 9.3e-46 187.6 182 50.0
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 2.1e-45 186.4 205 48.3
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 2.7e-45 186.0 202 51.0
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 3.5e-45 185.7 207 51.2
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 1.0e-44 184.1 202 49.0
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 1.0e-44 184.1 196 49.5
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 1.3e-44 183.7 199 52.3
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 8.7e-44 181.0 210 49.0
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 1.1e-43 180.6 199 52.3
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 1.1e-43 180.6 202 49.0
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 1.9e-43 179.9 203 49.3
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 1.9e-43 179.9 203 49.3
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 1.9e-43 179.9 208 50.5
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 3.3e-43 179.1 202 52.5
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 9.6e-43 177.6 201 48.3
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.6e-42 176.8 201 48.8
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.6e-42 176.8 201 48.8
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 1.6e-42 176.8 205 48.3
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 2.1e-42 176.4 200 49.5
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 6.2e-42 174.9 199 52.8
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 6.2e-42 174.9 197 50.8
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 6.2e-42 174.9 197 50.8
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 6.2e-42 174.9 200 50.0
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 1.8e-41 173.3 205 45.4
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 2.4e-41 172.9 197 45.7
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 2.4e-41 172.9 197 50.8
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 2.4e-41 172.9 197 48.2
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 2.4e-41 172.9 202 49.5
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 4.0e-41 172.2 207 49.3
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 4.0e-41 172.2 205 49.3
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 6.9e-41 171.4 195 49.7
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 2.6e-40 169.5 203 48.8
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 3.4e-40 169.1 207 48.8
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 4.5e-40 168.7 198 47.0
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 1.0e-39 167.5 203 48.8
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 1.0e-39 167.5 202 49.0
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 1.7e-39 166.8 181 50.8
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 1.7e-39 166.8 199 50.8
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 2.2e-39 166.4 207 46.9
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 2.9e-39 166.0 197 49.2
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 6.5e-39 164.9 199 45.7
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 8.4e-39 164.5 195 47.2
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 8.4e-39 164.5 206 46.1
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 8.4e-39 164.5 207 49.3
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 1.1e-38 164.1 194 46.4
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 1.4e-38 163.7 203 46.8
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.4e-38 163.7 200 49.0
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 1.4e-38 163.7 153 56.2
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 1.4e-38 163.7 204 45.1
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 1.4e-38 163.7 211 44.5
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 1.9e-38 163.3 198 49.5
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 2.5e-38 162.9 218 44.5
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 3.2e-38 162.5 213 46.0
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 7.1e-38 161.4 202 49.5
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 7.1e-38 161.4 202 49.5
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 1.2e-37 160.6 200 48.5
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 1.6e-37 160.2 206 44.7
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.7e-37 159.5 207 47.3
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 3.5e-37 159.1 194 44.8
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 4.6e-37 158.7 198 46.0
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 4.6e-37 158.7 196 47.4
BcaC01g02570 Brassica carinata HOM05D002388 ORTHO05D004745 2.3e-36 156.4 99 84.8
BolC3t18589H Brassica oleracea HOM05D002388 ORTHO05D004745 2.3e-36 156.4 99 84.8
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 2.3e-36 156.4 261 39.1
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 2.3e-36 156.4 204 46.6
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 8.7e-36 154.5 204 46.6
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 8.7e-36 154.5 271 38.0
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 8.7e-36 154.5 199 46.7
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 1.9e-35 153.3 221 43.0
BcaC05g25932 Brassica carinata HOM05D002388 ORTHO05D004745 3.3e-35 152.5 99 83.8
C05p18840 Brassica napus HOM05D002388 ORTHO05D004745 3.3e-35 152.5 99 83.8
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 4.3e-35 152.1 203 44.8
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 5.7e-35 151.8 206 45.6
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 5.7e-35 151.8 198 45.5
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 1.3e-34 150.6 203 44.3
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 2.2e-34 149.8 203 43.8
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.2e-34 149.8 201 45.3
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 6.3e-34 148.3 160 49.4
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 1.1e-33 147.5 204 43.1
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 2.4e-33 146.4 219 42.9
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 9.0e-33 144.4 96 66.7
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 2.9e-31 139.4 88 73.9
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 8.5e-31 137.9 202 41.1
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 1.1e-30 137.5 102 65.7
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 5.5e-30 135.2 197 43.1
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 1.0e-28 131.0 330 32.1
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 2.3e-28 129.8 201 39.8
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 5.1e-28 128.6 139 46.8
C03p63360 Brassica napus HOM05D002388 ORTHO05D004745 4.8e-26 122.1 77 87.0
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 8.2e-26 121.3 219 39.3
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 1.4e-25 120.6 165 43.0
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 3.4e-24 115.9 189 41.8
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 7.7e-24 114.8 88 61.4
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 1.3e-23 114.0 197 36.5
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 2.2e-23 113.2 181 40.9
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 6.5e-23 111.7 99 54.5
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 1.1e-22 110.9 164 40.9
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 1.1e-22 110.9 88 54.5
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.9e-22 110.2 155 43.9
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 2.5e-22 109.8 156 43.6
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 6.7e-20 101.7 154 44.2
AL1G46410 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 1.1e-19 100.9 123 50.4
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 2.0e-19 100.1 157 38.2
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 4.4e-19 99.0 133 45.1
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 2.6e-16 89.7 152 37.5
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 1.0e-15 87.8 159 42.1
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 4.2e-14 82.4 73 57.5
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 6.7e-12 75.1 54 66.7
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 4.4e-11 72.4 52 59.6
Sed0007566 Sechium edule HOM05D002388 ORTHO05D004745 4.4e-11 72.4 197 32.5
Haze_08158 Corylus avellana HOM05D002388 ORTHO05D004745 6.3e-10 68.6 92 40.2
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 6.3e-10 68.6 44 63.6
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 6.3e-10 68.6 44 63.6
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 8.2e-10 68.2 40 72.5
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 7.0e-09 65.1 95 37.9
CBR_g48716 Chara braunii HOM05D002388 ORTHO05D004745 9.1e-09 64.7 84 44.0
Hma1.2p1_0870F.1_g230820 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 2.9e-07 59.7 130 36.2


User provided reference genes

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