Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11640 Brassica carinata HOM05D006861 ORTHO05D008620 1.1e-116 423.3 218 100.0
C04p12840 Brassica napus HOM05D006861 ORTHO05D008620 1.1e-116 423.3 218 100.0
BolC4t22928H Brassica oleracea HOM05D006861 ORTHO05D008620 4.2e-116 421.4 218 99.5
BraA05t19976Z Brassica rapa HOM05D006861 ORTHO05D008620 1.8e-114 416.0 217 98.6
A05p10410 Brassica napus HOM05D006861 ORTHO05D008620 8.8e-114 413.7 217 95.9
BcaB02g09437 Brassica carinata HOM05D006861 ORTHO05D008620 2.4e-111 405.6 218 96.8
Sp4g17580 Schrenkiella parvula HOM05D006861 ORTHO05D008620 8.9e-106 387.1 217 92.2
Thhalv10017211m.g Eutrema salsugineum HOM05D006861 ORTHO05D008620 2.9e-104 382.1 217 90.3
AL4G31410 Arabidopsis lyrata HOM05D006861 ORTHO05D008620 4.3e-100 368.2 211 88.6
AT2G35360 Arabidopsis thaliana HOM05D006861 ORTHO05D008620 2.8e-99 365.5 211 87.7
CARHR129520 Cardamine hirsuta HOM05D006861 ORTHO05D008620 6.8e-98 360.9 219 84.9
Carub.0004s1705 Capsella rubella HOM05D006861 ORTHO05D008620 1.3e-96 356.7 211 84.4
Aa31LG9G15370 Aethionema arabicum HOM05D006861 ORTHO05D008620 8.6e-93 344.0 211 81.5
THA.LOC104807964 Tarenaya hassleriana HOM05D006861 ORTHO05D008620 2.7e-86 322.4 217 73.7
Thecc.03G231500 Theobroma cacao HOM05D006861 ORTHO05D008620 6.2e-75 284.6 209 66.5
Duzib205G0961 Durio zibethinus HOM05D006861 ORTHO05D008620 8.1e-75 284.3 210 65.7
Duzib068G0493 Durio zibethinus HOM05D006861 ORTHO05D008620 1.2e-73 280.4 205 66.3
Cfa012408 Carpinus fangiana HOM05D006861 ORTHO05D008620 1.5e-73 280.0 219 65.3
Haze_08270 Corylus avellana HOM05D006861 ORTHO05D008620 2.0e-73 279.6 219 64.8
Gohir.D03G170200 Gossypium hirsutum HOM05D006861 ORTHO05D008620 1.7e-72 276.6 210 65.2
Gorai.003G180500 Gossypium raimondii HOM05D006861 ORTHO05D008620 8.4e-72 274.2 210 64.8
Potri.003G089400 Populus trichocarpa HOM05D006861 ORTHO05D008620 1.1e-71 273.9 221 63.8
Gohir.A12G209800 Gossypium hirsutum HOM05D006861 ORTHO05D008620 1.4e-71 273.5 210 63.8
Prupe.5G041200 Prunus persica HOM05D006861 ORTHO05D008620 1.4e-71 273.5 212 65.6
Dinv28930 Davidia involucrata HOM05D006861 ORTHO05D008620 1.9e-71 273.1 222 62.2
Gohir.D12G212500 Gossypium hirsutum HOM05D006861 ORTHO05D008620 1.9e-71 273.1 210 64.3
QL12p006269 Quercus lobata HOM05D006861 ORTHO05D008620 1.9e-71 273.1 234 59.8
Gohir.A03G002100 Gossypium hirsutum HOM05D006861 ORTHO05D008620 9.3e-71 270.8 210 64.3
Actinidia14818 Actinidia chinensis HOM05D006861 ORTHO05D008620 2.7e-70 269.2 219 60.3
Medtr4g098640 Medicago truncatula HOM05D006861 ORTHO05D008620 2.7e-70 269.2 211 64.5
Ciclev10032685m.g Citrus clementina HOM05D006861 ORTHO05D008620 6.0e-70 268.1 219 63.5
Glyma.17G153700 Glycine max HOM05D006861 ORTHO05D008620 6.0e-70 268.1 218 61.5
Psat4g079280 Pisum sativum HOM05D006861 ORTHO05D008620 6.0e-70 268.1 217 63.6
GSVIVG01013176001 Vitis vinifera HOM05D006861 ORTHO05D008620 6.0e-70 268.1 212 62.7
CANSAT21G0325 Cannabis sativa HOM05D006861 ORTHO05D008620 7.8e-70 267.7 219 62.6
Lj4g0014575 Lotus japonicus HOM05D006861 ORTHO05D008620 1.3e-69 266.9 210 62.9
COL.COLO4_17076 Corchorus olitorius HOM05D006861 ORTHO05D008620 2.3e-69 266.2 210 65.2
FvH4_5g21620 Fragaria vesca HOM05D006861 ORTHO05D008620 3.9e-69 265.4 212 62.3
arahy.Tifrunner.gnm1.ann1.A00F14 Arachis hypogaea HOM05D006861 ORTHO05D008620 6.6e-69 264.6 217 61.3
VMungo0251G0361 Vigna mungo HOM05D006861 ORTHO05D008620 8.7e-69 264.2 215 61.9
arahy.Tifrunner.gnm1.ann1.P9U8RJ Arachis hypogaea HOM05D006861 ORTHO05D008620 1.1e-68 263.8 217 61.8
Hma1.2p1_0585F.1_g183570 Hydrangea macrophylla HOM05D006861 ORTHO05D008620 1.5e-68 263.5 220 60.9
FAN18G0349 Fragaria x ananassa HOM05D006861 ORTHO05D008620 1.9e-68 263.1 209 62.2
Manes.17G013800 Manihot esculenta HOM05D006861 ORTHO05D008620 1.9e-68 263.1 215 62.8
DCAR_008287 Daucus carota HOM05D006861 ORTHO05D008620 4.3e-68 261.9 215 60.0
Glyma.05G113600 Glycine max HOM05D006861 ORTHO05D008620 4.3e-68 261.9 218 60.6
TPR.G28655 Trifolium pratense HOM05D006861 ORTHO05D008620 4.3e-68 261.9 218 60.1
MD06G1031100 Malus domestica HOM05D006861 ORTHO05D008620 5.6e-68 261.5 212 62.7
Aqoxy3G02463 Aquilegia oxysepala HOM05D006861 ORTHO05D008620 7.3e-68 261.2 211 61.6
CSS0014670 Camellia sinensis var. sinensis HOM05D006861 ORTHO05D008620 9.6e-68 260.8 219 59.8
CiPaw.11G090800 Carya illinoinensis HOM05D006861 ORTHO05D008620 9.6e-68 260.8 218 60.1
Eucgr.D02180 Eucalyptus grandis HOM05D006861 ORTHO05D008620 9.6e-68 260.8 215 62.3
FAN13G1018 Fragaria x ananassa HOM05D006861 ORTHO05D008620 9.6e-68 260.8 209 63.6
Gorai.008G228100 Gossypium raimondii HOM05D006861 ORTHO05D008620 1.6e-67 260.0 221 59.7
CSS0041220 Camellia sinensis var. sinensis HOM05D006861 ORTHO05D008620 2.1e-67 259.6 219 59.4
AUR62007255 Chenopodium quinoa HOM05D006861 ORTHO05D008620 2.8e-67 259.2 215 58.6
Sabra03G0059200 Salix brachista HOM05D006861 ORTHO05D008620 2.8e-67 259.2 215 61.4
FAN08G0129 Fragaria x ananassa HOM05D006861 ORTHO05D008620 3.6e-67 258.8 212 63.2
Lalb_Chr09g0329521 Lupinus albus HOM05D006861 ORTHO05D008620 3.6e-67 258.8 210 61.9
Ah.12g054700 Amaranthus hybridus HOM05D006861 ORTHO05D008620 6.2e-67 258.1 223 61.0
FAN04G0264 Fragaria x ananassa HOM05D006861 ORTHO05D008620 8.1e-67 257.7 211 61.1
Ca_22062_v3 Cicer arietinum L. HOM05D006861 ORTHO05D008620 1.1e-66 257.3 218 59.2
RcHm_v2.0_Chr7g0209081 Rosa chinensis HOM05D006861 ORTHO05D008620 1.4e-66 256.9 221 59.3
QL12p006401 Quercus lobata HOM05D006861 ORTHO05D008620 9.0e-66 254.2 283 49.5
EL10Ac5g12163 Beta vulgaris HOM05D006861 ORTHO05D008620 1.2e-65 253.8 221 61.1
ClCG10G001830 Citrullus lanatus HOM05D006861 ORTHO05D008620 2.6e-65 252.7 217 59.4
TAR629G3318 Trochodendron aralioides HOM05D006861 ORTHO05D008620 3.4e-65 252.3 217 62.2
ATR0049G013 Amborella trichopoda HOM05D006861 ORTHO05D008620 9.9e-65 250.8 212 58.0
CsaV3_3G001910 Cucumis sativus L. HOM05D006861 ORTHO05D008620 9.9e-65 250.8 211 59.7
Lsat_1_v5_gn_8_112001 Lactuca sativa HOM05D006861 ORTHO05D008620 9.9e-65 250.8 214 58.9
Sed0027053 Sechium edule HOM05D006861 ORTHO05D008620 9.9e-65 250.8 211 58.3
MELO3C013865.2 Cucumis melo HOM05D006861 ORTHO05D008620 1.7e-64 250.0 216 58.8
Sc07g0008780 Simmondsia chinensis HOM05D006861 ORTHO05D008620 1.7e-64 250.0 219 57.1
Cc08_g02400 Coffea canephora HOM05D006861 ORTHO05D008620 1.9e-63 246.5 217 59.4
HanXRQChr16g0511531 Helianthus annuus HOM05D006861 ORTHO05D008620 5.4e-63 245.0 212 57.1
ECA233G2855 Erigeron canadensis HOM05D006861 ORTHO05D008620 2.1e-62 243.0 210 57.1
PSO782G3300 Papaver somniferum HOM05D006861 ORTHO05D008620 1.0e-61 240.7 217 58.5
AUR62018744 Chenopodium quinoa HOM05D006861 ORTHO05D008620 1.3e-61 240.4 217 54.4
Rhsim07G0124500 Rhododendron simsii HOM05D006861 ORTHO05D008620 1.3e-61 240.4 212 56.1
HPP92_028475 Vanilla planifolia HOM05D006861 ORTHO05D008620 2.3e-61 239.6 212 56.6
PSO063G6338 Papaver somniferum HOM05D006861 ORTHO05D008620 3.0e-61 239.2 217 58.1
Migut.A01006 Erythranthe guttata HOM05D006861 ORTHO05D008620 3.9e-61 238.8 217 52.5
HPP92_027725 Vanilla planifolia HOM05D006861 ORTHO05D008620 3.9e-61 238.8 212 56.6
Nitab4.5_0000535g0140 Nicotiana tabacum HOM05D006861 ORTHO05D008620 5.1e-61 238.4 218 57.3
SGA_v2.0_scaffold198G41105 Striga asiatica HOM05D006861 ORTHO05D008620 5.1e-61 238.4 216 52.3
Zm00001eb307090 Zea mays HOM05D006861 ORTHO05D008620 1.9e-60 236.5 216 56.5
Sopen08g002990 Solanum pennellii HOM05D006861 ORTHO05D008620 2.5e-60 236.1 211 59.7
MSTRG.12154 Avicennia marina HOM05D006861 ORTHO05D008620 4.3e-60 235.3 217 52.5
PGSC0003DMG400020500 Solanum tuberosum HOM05D006861 ORTHO05D008620 5.6e-60 235.0 212 59.0
Nn6g33632 Nelumbo nucifera HOM05D006861 ORTHO05D008620 9.6e-60 234.2 272 49.3
SalBow6G5529 Salvia bowleyana HOM05D006861 ORTHO05D008620 1.3e-59 233.8 216 53.2
Nitab4.5_0007026g0050 Nicotiana tabacum HOM05D006861 ORTHO05D008620 3.6e-59 232.3 223 55.6
Solyc08g007030.3 Solanum lycopersicum HOM05D006861 ORTHO05D008620 3.6e-59 232.3 212 58.0
Peaxi162Scf00102g00630 Petunia axillaris HOM05D006861 ORTHO05D008620 8.1e-59 231.1 211 58.8
TWI60G1564 Tripterygium wilfordii HOM05D006861 ORTHO05D008620 1.4e-58 230.3 222 56.8
CAN.G845.34 Capsicum annuum HOM05D006861 ORTHO05D008620 9.0e-58 227.6 218 56.0
Os09g0573100 Oryza sativa ssp. japonica HOM05D006861 ORTHO05D008620 4.5e-57 225.3 221 54.8
CDE12G0071 Ceratophyllum demersum HOM05D006861 ORTHO05D008620 7.9e-54 214.5 191 55.0
SEGI_11276 Sequoiadendron giganteum HOM05D006861 ORTHO05D008620 7.9e-54 214.5 209 47.4
vmacro14159 Vaccinium macrocarpon HOM05D006861 ORTHO05D008620 5.1e-53 211.8 210 52.9
Phvul.003G229300 Phaseolus vulgaris HOM05D006861 ORTHO05D008620 3.3e-52 209.1 156 65.4
Cpa.g.sc90.59 Carica papaya HOM05D006861 ORTHO05D008620 7.4e-52 208.0 143 68.5
Gohir.A09G039700 Gossypium hirsutum HOM05D006861 ORTHO05D008620 4.9e-48 195.3 138 67.4
Pp3c1_27050 Physcomitrium patens HOM05D006861 ORTHO05D008620 6.5e-48 194.9 213 48.4
Lj2A243G18 Lonicera japonica HOM05D006861 ORTHO05D008620 2.5e-47 193.0 148 61.5
Hma1.2p1_0585F.1_g183580 Hydrangea macrophylla HOM05D006861 ORTHO05D008620 5.5e-47 191.8 210 51.4
Dinv25198 Davidia involucrata HOM05D006861 ORTHO05D008620 7.9e-46 188.0 143 67.8
Actinidia09224 Actinidia chinensis HOM05D006861 ORTHO05D008620 3.3e-44 182.6 139 61.9
HanXRQChr16g0517491 Helianthus annuus HOM05D006861 ORTHO05D008620 2.1e-38 163.3 114 64.9
Atru.BG.44.p Acer truncatum HOM05D006861 ORTHO05D008620 3.6e-38 162.5 113 67.3
Hma1.2p1_2232F.1_g317620 Hydrangea macrophylla HOM05D006861 ORTHO05D008620 7.4e-36 154.8 211 43.1
CBR_g57857 Chara braunii HOM05D006861 ORTHO05D008620 1.5e-25 120.6 191 39.3
Cre12.g533400 Chlamydomonas reinhardtii HOM05D006861 ORTHO05D008620 4.2e-15 85.9 225 32.4
PRCOL_00000188 Prasinoderma coloniale HOM05D006861 ORTHO05D008620 1.2e-12 77.8 102 40.2
MCO13G047 Micromonas commoda HOM05D006861 ORTHO05D008620 7.7e-09 65.1 190 27.9
Gohir.A01G114301 Gossypium hirsutum HOM05D006861 ORTHO05D008620 2.1e-06 57.0 54 57.4


User provided reference genes

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