Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11591 Brassica carinata HOM05D000076 ORTHO05D013791 1.1e-60 236.5 122 100.0
C04p13610 Brassica napus HOM05D000076 ORTHO05D013391 8.4e-29 130.6 99 73.7
BolC7t40975H Brassica oleracea HOM05D000076 ORTHO05D013791 8.4e-21 104.0 84 70.2
BcaC05g29580 Brassica carinata HOM05D000076 ORTHO05D002793 3.9e-10 68.6 34 97.1
A05p40340 Brassica napus HOM05D000076 ORTHO05D002793 3.9e-10 68.6 34 97.1
C05p59420 Brassica napus HOM05D000076 ORTHO05D002793 3.9e-10 68.6 34 97.1
BolC5t34599H Brassica oleracea HOM05D000076 ORTHO05D002793 3.9e-10 68.6 34 97.1
Thhalv10022290m.g Eutrema salsugineum HOM05D000076 ORTHO05D002793 1.9e-09 66.2 34 91.2
Carub.0003s0748 Capsella rubella HOM05D000076 ORTHO05D002793 2.5e-09 65.9 34 91.2
CARHR082630 Cardamine hirsuta HOM05D000076 ORTHO05D002793 2.5e-09 65.9 34 91.2
THA.LOC104819055 Tarenaya hassleriana HOM05D000076 ORTHO05D002793 2.5e-09 65.9 34 94.1
AL3G19270 Arabidopsis lyrata HOM05D000076 ORTHO05D002793 3.3e-09 65.5 34 91.2
Sp3g06820 Schrenkiella parvula HOM05D000076 ORTHO05D002793 4.3e-09 65.1 34 88.2
Medtr4g023030 Medicago truncatula HOM05D000076 ORTHO05D002793 5.6e-09 64.7 34 91.2
AT3G07900 Arabidopsis thaliana HOM05D000076 ORTHO05D002793 7.4e-09 64.3 34 91.2
BcaC06g33319 Brassica carinata HOM05D000076 ORTHO05D013391 9.6e-09 63.9 31 100.0
C07p05750 Brassica napus HOM05D000076 ORTHO05D013391 9.6e-09 63.9 31 100.0
BolC7t45109H Brassica oleracea HOM05D000076 ORTHO05D013791 9.6e-09 63.9 31 100.0
Eucgr.G03403 Eucalyptus grandis HOM05D000076 ORTHO05D002793 1.3e-08 63.5 38 84.2
Glyma.08G150700 Glycine max HOM05D000076 ORTHO05D002793 1.3e-08 63.5 34 88.2
Glyma.15G270400 Glycine max HOM05D000076 ORTHO05D002793 1.3e-08 63.5 34 88.2
Ca_19921_v3 Cicer arietinum L. HOM05D000076 ORTHO05D002793 1.6e-08 63.2 34 88.2
Psat7g233160 Pisum sativum HOM05D000076 ORTHO05D002793 1.6e-08 63.2 34 88.2
TAR633G0093 Trochodendron aralioides HOM05D000076 ORTHO05D002793 1.6e-08 63.2 38 81.6
TAR633G0627 Trochodendron aralioides HOM05D000076 ORTHO05D002793 1.6e-08 63.2 38 81.6
Actinidia32327 Actinidia chinensis HOM05D000076 ORTHO05D002793 2.8e-08 62.4 38 81.6
BcaC06g36285 Brassica carinata HOM05D000076 ORTHO05D013391 2.8e-08 62.4 31 96.8
Cfa010720 Carpinus fangiana HOM05D000076 ORTHO05D002793 2.8e-08 62.4 38 81.6
Haze_03253 Corylus avellana HOM05D000076 ORTHO05D002793 2.8e-08 62.4 38 81.6
arahy.Tifrunner.gnm1.ann1.U180LC Arachis hypogaea HOM05D000076 ORTHO05D002793 3.7e-08 62.0 34 88.2
arahy.Tifrunner.gnm1.ann1.X60LSS Arachis hypogaea HOM05D000076 ORTHO05D002793 3.7e-08 62.0 34 88.2
C07p45890 Brassica napus HOM05D000076 ORTHO05D013791 3.7e-08 62.0 30 100.0
Cpa.g.sc458.1 Carica papaya HOM05D000076 ORTHO05D002793 3.7e-08 62.0 38 81.6
CiPaw.13G001600 Carya illinoinensis HOM05D000076 ORTHO05D002793 3.7e-08 62.0 38 81.6
Ca_27448_v3 Cicer arietinum L. HOM05D000076 ORTHO05D002793 3.7e-08 62.0 34 88.2
COL.COLO4_23909 Corchorus olitorius HOM05D000076 ORTHO05D002793 3.7e-08 62.0 34 88.2
Gohir.A08G146300 Gossypium hirsutum HOM05D000076 ORTHO05D002793 3.7e-08 62.0 34 88.2
Gohir.D08G167200 Gossypium hirsutum HOM05D000076 ORTHO05D002793 3.7e-08 62.0 34 88.2
Gorai.004G174600 Gossypium raimondii HOM05D000076 ORTHO05D002793 3.7e-08 62.0 34 88.2
Manes.07G002200 Manihot esculenta HOM05D000076 ORTHO05D002793 3.7e-08 62.0 38 81.6
Manes.10G149200 Manihot esculenta HOM05D000076 ORTHO05D002793 3.7e-08 62.0 38 81.6
Nn7g36044 Nelumbo nucifera HOM05D000076 ORTHO05D002793 3.7e-08 62.0 38 81.6
Potri.001G227000 Populus trichocarpa HOM05D000076 ORTHO05D002793 3.7e-08 62.0 34 88.2
Potri.009G022500 Populus trichocarpa HOM05D000076 ORTHO05D002793 3.7e-08 62.0 38 81.6
TPR.G12276 Trifolium pratense HOM05D000076 ORTHO05D002793 3.7e-08 62.0 34 88.2
TPR.G30608 Trifolium pratense HOM05D000076 ORTHO05D002793 3.7e-08 62.0 34 85.3
TWI09G0913 Tripterygium wilfordii HOM05D000076 ORTHO05D002793 3.7e-08 62.0 38 81.6
TWI53G0472 Tripterygium wilfordii HOM05D000076 ORTHO05D002793 3.7e-08 62.0 38 81.6
Oeu047524.1 Olea europaea HOM05D000076 ORTHO05D002793 4.8e-08 61.6 40 77.5
MSTRG.20611 Avicennia marina HOM05D000076 ORTHO05D002793 6.2e-08 61.2 34 88.2
Oeu019122.1 Olea europaea HOM05D000076 ORTHO05D002793 6.2e-08 61.2 38 81.6
Oeu047523.1 Olea europaea HOM05D000076 ORTHO05D002793 6.2e-08 61.2 38 81.6
PGR031G1378 Punica granatum HOM05D000076 ORTHO05D002793 6.2e-08 61.2 38 78.9
QL04p003378 Quercus lobata HOM05D000076 ORTHO05D002793 6.2e-08 61.2 38 76.3
SEGI_29402 Sequoiadendron giganteum HOM05D000076 ORTHO05D002793 6.2e-08 61.2 38 78.9
SGA_v2.0_scaffold5G03117 Striga asiatica HOM05D000076 ORTHO05D002793 6.2e-08 61.2 34 88.2
Ciclev10031320m.g Citrus clementina HOM05D000076 ORTHO05D002793 8.1e-08 60.8 38 78.9
Lalb_Chr03g0033901 Lupinus albus HOM05D000076 ORTHO05D002793 8.1e-08 60.8 34 85.3
Lalb_Chr19g0132031 Lupinus albus HOM05D000076 ORTHO05D002793 8.1e-08 60.8 34 85.3
MBI04_g12745_MAGBIO Magnolia biondii HOM05D000076 ORTHO05D002793 8.1e-08 60.8 34 85.3
Medtr3g026650 Medicago truncatula HOM05D000076 ORTHO05D002793 8.1e-08 60.8 34 85.3
Nn2g15600 Nelumbo nucifera HOM05D000076 ORTHO05D002793 8.1e-08 60.8 38 78.9
Psat5g207320 Pisum sativum HOM05D000076 ORTHO05D002793 8.1e-08 60.8 34 85.3
Actinidia31691 Actinidia chinensis HOM05D000076 ORTHO05D002793 1.1e-07 60.5 38 78.9
Nitab4.5_0002239g0020 Nicotiana tabacum HOM05D000076 ORTHO05D002793 1.1e-07 60.5 38 78.9
Nitab4.5_0006866g0020 Nicotiana tabacum HOM05D000076 ORTHO05D002793 1.1e-07 60.5 38 78.9
TAR636G2774 Trochodendron aralioides HOM05D000076 ORTHO05D013791 1.1e-07 60.5 38 78.9
Duzib133G0179 Durio zibethinus HOM05D000076 ORTHO05D002793 1.4e-07 60.1 34 85.3
Duzib268G0631 Durio zibethinus HOM05D000076 ORTHO05D002793 1.4e-07 60.1 34 85.3
Glyma.09G003300 Glycine max HOM05D000076 ORTHO05D002793 1.4e-07 60.1 34 82.4
Glyma.12G239900 Glycine max HOM05D000076 ORTHO05D002793 1.4e-07 60.1 34 82.4
Lj7C565T2 Lonicera japonica HOM05D000076 ORTHO05D002793 1.4e-07 60.1 38 78.9
Phvul.005G038100 Phaseolus vulgaris HOM05D000076 ORTHO05D002793 1.4e-07 60.1 34 85.3
Phvul.011G214200 Phaseolus vulgaris HOM05D000076 ORTHO05D002793 1.4e-07 60.1 38 76.3
Sabra16G0135500 Salix brachista HOM05D000076 ORTHO05D002793 1.4e-07 60.1 34 85.3
Thecc.01G415400 Theobroma cacao HOM05D000076 ORTHO05D002793 1.4e-07 60.1 34 85.3
VMungo1080G0408 Vigna mungo HOM05D000076 ORTHO05D002793 1.4e-07 60.1 34 85.3
VMungo1127G0777 Vigna mungo HOM05D000076 ORTHO05D002793 1.4e-07 60.1 38 76.3
CDE06G0747 Ceratophyllum demersum HOM05D000076 ORTHO05D002793 1.8e-07 59.7 38 78.9
CDE07G1798 Ceratophyllum demersum HOM05D000076 ORTHO05D002793 1.8e-07 59.7 38 78.9
ECA234G1967 Erigeron canadensis HOM05D000076 ORTHO05D002793 1.8e-07 59.7 38 78.9
Migut.N01490 Erythranthe guttata HOM05D000076 ORTHO05D002793 1.8e-07 59.7 34 85.3
FvH4_7g00280 Fragaria vesca HOM05D000076 ORTHO05D002793 1.8e-07 59.7 38 78.9
FAN01G2317 Fragaria x ananassa HOM05D000076 ORTHO05D002793 1.8e-07 59.7 38 78.9
FAN01G2595 Fragaria x ananassa HOM05D000076 ORTHO05D002793 1.8e-07 59.7 38 78.9
FAN03G0845 Fragaria x ananassa HOM05D000076 ORTHO05D002793 1.8e-07 59.7 38 78.9
FAN06G0909 Fragaria x ananassa HOM05D000076 ORTHO05D002793 1.8e-07 59.7 38 78.9
HanXRQChr16g0520491 Helianthus annuus HOM05D000076 ORTHO05D002793 1.8e-07 59.7 38 78.9
Lsat_1_v5_gn_4_46321 Lactuca sativa HOM05D000076 ORTHO05D002793 1.8e-07 59.7 38 78.9
Lj3g0004904 Lotus japonicus HOM05D000076 ORTHO05D002793 1.8e-07 59.7 34 82.4
Lalb_Chr25g0283451 Lupinus albus HOM05D000076 ORTHO05D002793 1.8e-07 59.7 34 82.4
MBI01_g02368_MAGBIO Magnolia biondii HOM05D000076 ORTHO05D002793 1.8e-07 59.7 38 76.3
MBI01_g02369_MAGBIO Magnolia biondii HOM05D000076 ORTHO05D002793 1.8e-07 59.7 38 76.3
Oeu013592.1 Olea europaea HOM05D000076 ORTHO05D002793 1.8e-07 59.7 38 78.9
Prupe.2G005200 Prunus persica HOM05D000076 ORTHO05D002793 1.8e-07 59.7 38 78.9
RcHm_v2.0_Chr1g0314081 Rosa chinensis HOM05D000076 ORTHO05D002793 1.8e-07 59.7 38 78.9
TWI73G1039 Tripterygium wilfordii HOM05D000076 ORTHO05D002793 1.8e-07 59.7 38 78.9
HPP92_019680 Vanilla planifolia HOM05D000076 ORTHO05D002793 1.8e-07 59.7 34 85.3
GSVIVG01032027001 Vitis vinifera HOM05D000076 ORTHO05D002793 1.8e-07 59.7 38 78.9
Migut.B01347 Erythranthe guttata HOM05D000076 ORTHO05D002793 2.4e-07 59.3 38 76.3
Aqoxy1G00196 Aquilegia oxysepala HOM05D000076 ORTHO05D002793 3.1e-07 58.9 38 78.9
AL4G43520 Arabidopsis lyrata HOM05D000076 ORTHO05D002793 3.1e-07 58.9 34 85.3
AT2G44500 Arabidopsis thaliana HOM05D000076 ORTHO05D002793 3.1e-07 58.9 34 85.3
Carub.0004s2706 Capsella rubella HOM05D000076 ORTHO05D002793 3.1e-07 58.9 34 85.3
CAN.G1393.11 Capsicum annuum HOM05D000076 ORTHO05D002793 3.1e-07 58.9 40 72.5
CARHR139680 Cardamine hirsuta HOM05D000076 ORTHO05D002793 3.1e-07 58.9 34 85.3
Gohir.A08G053400 Gossypium hirsutum HOM05D000076 ORTHO05D002793 3.1e-07 58.9 34 82.4
Gohir.D08G062900 Gossypium hirsutum HOM05D000076 ORTHO05D002793 3.1e-07 58.9 34 82.4
Sp4g26590 Schrenkiella parvula HOM05D000076 ORTHO05D002793 3.1e-07 58.9 34 85.3
THA.LOC104802513 Tarenaya hassleriana HOM05D000076 ORTHO05D002793 3.1e-07 58.9 34 85.3
vmacro13632 Vaccinium macrocarpon HOM05D000076 ORTHO05D002793 3.1e-07 58.9 35 77.1
ClCG10G012590 Citrullus lanatus HOM05D000076 ORTHO05D002793 4.0e-07 58.5 38 76.3
MELO3C023947.2 Cucumis melo HOM05D000076 ORTHO05D002793 4.0e-07 58.5 38 76.3
CsaV3_3G032400 Cucumis sativus L. HOM05D000076 ORTHO05D002793 4.0e-07 58.5 38 76.3
DCAR_015689 Daucus carota HOM05D000076 ORTHO05D002793 4.0e-07 58.5 38 76.3
ECA248G3408 Erigeron canadensis HOM05D000076 ORTHO05D002793 4.0e-07 58.5 38 76.3
HanXRQChr01g0018501 Helianthus annuus HOM05D000076 ORTHO05D002793 4.0e-07 58.5 38 76.3
Hma1.2p1_0038F.1_g024250 Hydrangea macrophylla HOM05D000076 ORTHO05D002793 4.0e-07 58.5 34 82.4
Lj3g0022151 Lotus japonicus HOM05D000076 ORTHO05D002793 4.0e-07 58.5 34 79.4
MBI04_g27126_MAGBIO Magnolia biondii HOM05D000076 ORTHO05D002793 4.0e-07 58.5 34 82.4
Sed0009486 Sechium edule HOM05D000076 ORTHO05D002793 4.0e-07 58.5 38 76.3
Solyc01g086640.2 Solanum lycopersicum HOM05D000076 ORTHO05D002793 4.0e-07 58.5 38 76.3
Sopen01g033660 Solanum pennellii HOM05D000076 ORTHO05D002793 4.0e-07 58.5 38 76.3
PGSC0003DMG400025240 Solanum tuberosum HOM05D000076 ORTHO05D002793 4.0e-07 58.5 38 76.3
Aa31LG1G26100 Aethionema arabicum HOM05D000076 ORTHO05D002793 5.3e-07 58.2 34 82.4
MSTRG.28086 Avicennia marina HOM05D000076 ORTHO05D002793 5.3e-07 58.2 38 76.3
DCAR_029622 Daucus carota HOM05D000076 ORTHO05D002793 5.3e-07 58.2 38 76.3
Solyc10g045420.3 Solanum lycopersicum HOM05D000076 ORTHO05D002793 5.3e-07 58.2 38 76.3
Sopen10g015620 Solanum pennellii HOM05D000076 ORTHO05D002793 5.3e-07 58.2 38 76.3
Aa31LG5G18450 Aethionema arabicum HOM05D000076 ORTHO05D002793 6.9e-07 57.8 34 82.4
Thhalv10001372m.g Eutrema salsugineum HOM05D000076 ORTHO05D002793 6.9e-07 57.8 34 82.4
Lj9A627T61 Lonicera japonica HOM05D000076 ORTHO05D002793 6.9e-07 57.8 38 76.3
PSO339G4782 Papaver somniferum HOM05D000076 ORTHO05D002793 6.9e-07 57.8 38 76.3
Peaxi162Scf00968g00312 Petunia axillaris HOM05D000076 ORTHO05D002793 6.9e-07 57.8 38 76.3
PGR044G1416 Punica granatum HOM05D000076 ORTHO05D002793 6.9e-07 57.8 34 85.3
SGA_v2.0_scaffold95G28784 Striga asiatica HOM05D000076 ORTHO05D002793 6.9e-07 57.8 34 82.4
ATR0605G396 Amborella trichopoda HOM05D000076 ORTHO05D002793 9.0e-07 57.4 38 71.1
MSTRG.5002 Avicennia marina HOM05D000076 ORTHO05D002793 9.0e-07 57.4 38 76.3
Sabra09G0014100 Salix brachista HOM05D000076 ORTHO05D002793 9.0e-07 57.4 35 82.9
SMO364G0198 Selaginella moellendorffii HOM05D000076 ORTHO05D002793 9.0e-07 57.4 38 73.7
TAR636G3592 Trochodendron aralioides HOM05D000076 ORTHO05D002793 9.0e-07 57.4 38 76.3
BcaB02g08827 Brassica carinata HOM05D000076 ORTHO05D002793 1.2e-06 57.0 34 82.4
BcaC02g12302 Brassica carinata HOM05D000076 ORTHO05D002793 1.2e-06 57.0 34 82.4
A05p04660 Brassica napus HOM05D000076 ORTHO05D002793 1.2e-06 57.0 34 82.4
C04p05400 Brassica napus HOM05D000076 ORTHO05D002793 1.2e-06 57.0 34 82.4
BolC4t22180H Brassica oleracea HOM05D000076 ORTHO05D002793 1.2e-06 57.0 34 82.4
BraA05t19442Z Brassica rapa HOM05D000076 ORTHO05D002793 1.2e-06 57.0 34 82.4
MD02G1317900 Malus domestica HOM05D000076 ORTHO05D002793 1.2e-06 57.0 38 76.3
MD07G1004400 Malus domestica HOM05D000076 ORTHO05D002793 1.2e-06 57.0 38 76.3
Peaxi162Scf00058g00514 Petunia axillaris HOM05D000076 ORTHO05D002793 1.2e-06 57.0 38 73.7
SalBow4G2814 Salvia bowleyana HOM05D000076 ORTHO05D002793 1.2e-06 57.0 34 82.4
THA.LOC104817163 Tarenaya hassleriana HOM05D000076 ORTHO05D002793 1.2e-06 57.0 34 82.4
CANSAT11G2384 Cannabis sativa HOM05D000076 ORTHO05D002793 1.5e-06 56.6 38 73.7
Cc02_g27300 Coffea canephora HOM05D000076 ORTHO05D002793 1.5e-06 56.6 38 73.7
QL04p003328 Quercus lobata HOM05D000076 ORTHO05D013791 1.5e-06 56.6 42 66.7
SEGI_25727 Sequoiadendron giganteum HOM05D000076 ORTHO05D002793 1.5e-06 56.6 34 79.4
Sed0023960 Sechium edule HOM05D000076 ORTHO05D002793 2.0e-06 56.2 38 73.7
Dinv43479 Davidia involucrata HOM05D000076 ORTHO05D002793 2.6e-06 55.8 38 71.1
Lsat_1_v5_gn_1_108781 Lactuca sativa HOM05D000076 ORTHO05D002793 2.6e-06 55.8 38 73.7
unitig_0.g1372 Utricularia gibba HOM05D000076 ORTHO05D002793 2.6e-06 55.8 53 58.5
Hma1.2p1_1089F.1_g255700 Hydrangea macrophylla HOM05D000076 ORTHO05D002793 3.4e-06 55.5 38 71.1
TAR636G1429 Trochodendron aralioides HOM05D000076 ORTHO05D013791 3.4e-06 55.5 38 73.7
Gorai.004G065100 Gossypium raimondii HOM05D000076 ORTHO05D002793 4.5e-06 55.1 34 76.5
PGSC0003DMG400010509 Solanum tuberosum HOM05D000076 ORTHO05D002793 4.5e-06 55.1 38 71.1
unitig_61.g26442 Utricularia gibba HOM05D000076 ORTHO05D013791 4.5e-06 55.1 48 64.6
BcaB06g27449 Brassica carinata HOM05D000076 ORTHO05D013391 5.8e-06 54.7 31 90.3
SMO200G0066 Selaginella moellendorffii HOM05D000076 ORTHO05D002793 5.8e-06 54.7 38 68.4
CSS0039627 Camellia sinensis var. sinensis HOM05D000076 ORTHO05D002793 1.0e-05 53.9 34 73.5
CSS0042110 Camellia sinensis var. sinensis HOM05D000076 ORTHO05D002793 1.0e-05 53.9 34 73.5
Eucgr.G00021 Eucalyptus grandis HOM05D000076 ORTHO05D002793 1.0e-05 53.9 38 71.1
Sc11g0009390 Simmondsia chinensis HOM05D000076 ORTHO05D002793 1.0e-05 53.9 34 79.4


User provided reference genes

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