Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11538 Brassica carinata HOM05D007074 ORTHO05D008542 1.9e-137 492.7 274 100.0
C04p14170 Brassica napus HOM05D007074 ORTHO05D008542 5.5e-137 491.1 274 99.6
BolC4t23006H Brassica oleracea HOM05D007074 ORTHO05D008542 5.5e-137 491.1 274 99.6
BraA05t20049Z Brassica rapa HOM05D007074 ORTHO05D008542 1.9e-121 439.5 275 87.3
A05p11040 Brassica napus HOM05D007074 ORTHO05D008542 3.2e-121 438.7 275 86.9
BcaB02g09522 Brassica carinata HOM05D007074 ORTHO05D008542 3.0e-95 352.4 281 71.9
BolC4t27860H Brassica oleracea HOM05D007074 ORTHO05D008542 2.4e-92 342.8 282 68.8
Sp4g16880 Schrenkiella parvula HOM05D007074 ORTHO05D008542 5.4e-92 341.7 286 71.0
A04p26510 Brassica napus HOM05D007074 ORTHO05D008542 1.1e-84 317.4 282 64.5
C04p63930 Brassica napus HOM05D007074 ORTHO05D008542 1.1e-84 317.4 282 64.5
Thhalv10017803m.g Eutrema salsugineum HOM05D007074 ORTHO05D008542 1.8e-84 316.6 280 67.1
BraA04t18155Z Brassica rapa HOM05D007074 ORTHO05D008542 1.9e-81 306.6 282 63.5
BcaB06g28786 Brassica carinata HOM05D007074 ORTHO05D008542 1.7e-77 293.5 281 63.3
Carub.0004s1629 Capsella rubella HOM05D007074 ORTHO05D008542 9.9e-70 267.7 299 58.2
AT2G34610 Arabidopsis thaliana HOM05D007074 ORTHO05D008542 2.2e-69 266.5 300 56.0
CARHR128710 Cardamine hirsuta HOM05D007074 ORTHO05D008542 4.0e-63 245.7 291 57.0
AL4G30590 Arabidopsis lyrata HOM05D007074 ORTHO05D008542 3.8e-61 239.2 300 53.7
AL270U10020 Arabidopsis lyrata HOM05D007074 ORTHO05D008542 6.4e-61 238.4 300 53.3
CARHR029240 Cardamine hirsuta HOM05D007074 ORTHO05D008542 2.2e-53 213.4 289 50.9
Carub.0001s2842 Capsella rubella HOM05D007074 ORTHO05D008542 5.6e-49 198.7 295 46.4
BcaB07g32617 Brassica carinata HOM05D007074 ORTHO05D008542 1.8e-47 193.7 293 45.7
Thhalv10008361m.g Eutrema salsugineum HOM05D007074 ORTHO05D008542 4.0e-47 192.6 301 45.2
THA.LOC104814307 Tarenaya hassleriana HOM05D007074 ORTHO05D008542 1.7e-45 187.2 294 45.6
Sp1g26010 Schrenkiella parvula HOM05D007074 ORTHO05D008542 1.1e-44 184.5 290 44.1
A07p10060 Brassica napus HOM05D007074 ORTHO05D008542 1.9e-44 183.7 287 46.3
BraA07t28799Z Brassica rapa HOM05D007074 ORTHO05D008542 1.9e-44 183.7 287 46.3
A09p36350 Brassica napus HOM05D007074 ORTHO05D008542 2.4e-44 183.3 292 46.6
BraA09t39159Z Brassica rapa HOM05D007074 ORTHO05D008542 2.4e-44 183.3 292 46.6
Aa31LG10G6790 Aethionema arabicum HOM05D007074 ORTHO05D008542 6.0e-43 178.7 282 44.7
BcaB03g13841 Brassica carinata HOM05D007074 ORTHO05D008542 7.9e-43 178.3 289 46.4
AL1G44090 Arabidopsis lyrata HOM05D007074 ORTHO05D008542 3.0e-42 176.4 285 43.9
AL700U10010 Arabidopsis lyrata HOM05D007074 ORTHO05D008542 3.0e-42 176.4 285 43.9
BcaC05g27044 Brassica carinata HOM05D007074 ORTHO05D008542 5.6e-41 172.2 296 44.9
C05p29030 Brassica napus HOM05D007074 ORTHO05D008542 5.6e-41 172.2 296 44.9
BolC5t31631H Brassica oleracea HOM05D007074 ORTHO05D008542 5.6e-41 172.2 296 44.9
AT1G30190 Arabidopsis thaliana HOM05D007074 ORTHO05D008542 7.4e-41 171.8 294 43.5
THA.LOC104820655 Tarenaya hassleriana HOM05D007074 ORTHO05D008542 8.7e-34 148.3 300 40.3
Aa31LG6G5540 Aethionema arabicum HOM05D007074 ORTHO05D008542 1.3e-26 124.4 372 31.5
Thecc.06G148300 Theobroma cacao HOM05D007074 ORTHO05D008542 2.5e-17 93.6 284 32.0
Gohir.A05G147500 Gossypium hirsutum HOM05D007074 ORTHO05D008542 1.7e-16 90.9 290 31.7
Gorai.009G154100 Gossypium raimondii HOM05D007074 ORTHO05D008542 3.1e-15 86.7 252 32.1
BcaC06g35492 Brassica carinata HOM05D007074 ORTHO05D008542 4.1e-15 86.3 213 38.0
BolC7t42036H Brassica oleracea HOM05D007074 ORTHO05D008542 4.1e-15 86.3 213 38.0
COL.COLO4_31042 Corchorus olitorius HOM05D007074 ORTHO05D008542 5.3e-15 85.9 248 33.9
Gohir.D05G150000 Gossypium hirsutum HOM05D007074 ORTHO05D008542 6.9e-15 85.5 252 32.1
MD05G1281700 Malus domestica HOM05D007074 ORTHO05D008542 9.1e-15 85.1 266 35.7
QL05p057294 Quercus lobata HOM05D007074 ORTHO05D008542 1.2e-14 84.7 281 29.9
Prupe.4G082900 Prunus persica HOM05D007074 ORTHO05D008542 2.6e-14 83.6 282 31.6
MD10G1260500 Malus domestica HOM05D007074 ORTHO05D008542 1.0e-13 81.6 268 34.7
Duzib235G1065 Durio zibethinus HOM05D007074 ORTHO05D008542 1.3e-13 81.3 272 31.2
CiPaw.10G090600 Carya illinoinensis HOM05D007074 ORTHO05D008542 5.0e-13 79.3 263 31.9
Manes.15G123200 Manihot esculenta HOM05D007074 ORTHO05D008542 6.5e-13 79.0 276 31.5
TWI53G1156 Tripterygium wilfordii HOM05D007074 ORTHO05D008542 1.4e-12 77.8 272 31.6
Ciclev10017572m.g Citrus clementina HOM05D007074 ORTHO05D008542 2.5e-12 77.0 274 29.6
Manes.17G071900 Manihot esculenta HOM05D007074 ORTHO05D008542 3.2e-12 76.6 278 30.9
Cfa000927 Carpinus fangiana HOM05D007074 ORTHO05D008542 4.2e-12 76.3 278 32.4
Hma1.2p1_0020F.1_g014170 Hydrangea macrophylla HOM05D007074 ORTHO05D008542 1.6e-11 74.3 242 31.8
FAN21G0051 Fragaria x ananassa HOM05D007074 ORTHO05D008542 7.9e-11 72.0 262 32.1
FAN16G0984 Fragaria x ananassa HOM05D007074 ORTHO05D008542 1.0e-10 71.6 262 32.8
TWI73G0984 Tripterygium wilfordii HOM05D007074 ORTHO05D008542 1.8e-10 70.9 270 31.1
FAN25G3808 Fragaria x ananassa HOM05D007074 ORTHO05D008542 2.3e-10 70.5 262 32.8
Oeu034132.1 Olea europaea HOM05D007074 ORTHO05D008542 8.8e-10 68.6 261 30.3
Lalb_Chr20g0117821 Lupinus albus HOM05D007074 ORTHO05D008542 2.6e-09 67.0 280 28.6
Nn3g20397 Nelumbo nucifera HOM05D007074 ORTHO05D008542 9.7e-09 65.1 272 28.3
Phvul.006G166000 Phaseolus vulgaris HOM05D007074 ORTHO05D008542 9.7e-09 65.1 265 31.3
SGA_v2.0_scaffold1478G53958 Striga asiatica HOM05D007074 ORTHO05D008542 2.2e-08 63.9 267 29.6
SGA_v2.0_scaffold1G00191 Striga asiatica HOM05D007074 ORTHO05D008542 2.2e-08 63.9 267 29.6
Atru.chr10.1177 Acer truncatum HOM05D007074 ORTHO05D008542 2.8e-08 63.5 274 28.5
MELO3C002739.2 Cucumis melo HOM05D007074 ORTHO05D008542 3.7e-08 63.2 273 30.0
Glyma.13G219300 Glycine max HOM05D007074 ORTHO05D008542 3.7e-08 63.2 266 28.6
CsaV3_1G032390 Cucumis sativus L. HOM05D007074 ORTHO05D008542 1.4e-07 61.2 276 30.1
FvH4_3g05300 Fragaria vesca HOM05D007074 ORTHO05D008542 2.4e-07 60.5 254 32.7
Medtr2g019160 Medicago truncatula HOM05D007074 ORTHO05D008542 3.1e-07 60.1 275 29.8
CiPaw.09G122000 Carya illinoinensis HOM05D007074 ORTHO05D008542 4.1e-07 59.7 282 29.8
Gohir.A06G138601 Gossypium hirsutum HOM05D007074 ORTHO05D008542 4.1e-07 59.7 238 29.0
Psat1g191160 Pisum sativum HOM05D007074 ORTHO05D008542 5.3e-07 59.3 261 28.0
PGR031G2887 Punica granatum HOM05D007074 ORTHO05D008542 5.3e-07 59.3 254 28.7
Dinv05217 Davidia involucrata HOM05D007074 ORTHO05D008542 6.9e-07 58.9 135 30.4
Glyma.15G092900 Glycine max HOM05D007074 ORTHO05D008542 6.9e-07 58.9 265 29.8
Migut.M00897 Erythranthe guttata HOM05D007074 ORTHO05D008542 9.1e-07 58.5 271 28.8
TPR.G26250 Trifolium pratense HOM05D007074 ORTHO05D008542 9.1e-07 58.5 285 29.5
Psat1g191080 Pisum sativum HOM05D007074 ORTHO05D008542 1.2e-06 58.2 276 26.1
Glyma.08G097500 Glycine max HOM05D007074 ORTHO05D008542 2.0e-06 57.4 253 26.9
Gorai.010G167100 Gossypium raimondii HOM05D007074 ORTHO05D008542 2.0e-06 57.4 238 27.3
Gohir.D06G143401 Gossypium hirsutum HOM05D007074 ORTHO05D008542 5.9e-06 55.8 238 27.3
Nn4g26598 Nelumbo nucifera HOM05D007074 ORTHO05D008542 5.9e-06 55.8 261 29.1


User provided reference genes

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