Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11535 Brassica carinata HOM05D001016 ORTHO05D027033 4.8e-31 137.1 65 100.0
AL4G30570 Arabidopsis lyrata HOM05D001016 ORTHO05D004071 7.1e-19 96.7 48 93.8
AT1G30120 Arabidopsis thaliana HOM05D001016 ORTHO05D004071 7.1e-19 96.7 48 93.8
AT2G34590 Arabidopsis thaliana HOM05D001016 ORTHO05D004071 7.1e-19 96.7 48 93.8
BcaB03g12195 Brassica carinata HOM05D001016 ORTHO05D004071 7.1e-19 96.7 48 93.8
BcaB07g32614 Brassica carinata HOM05D001016 ORTHO05D004071 7.1e-19 96.7 48 93.8
BcaC01g00156 Brassica carinata HOM05D001016 ORTHO05D004071 7.1e-19 96.7 48 93.8
BcaC05g27038 Brassica carinata HOM05D001016 ORTHO05D004071 7.1e-19 96.7 48 93.8
A08p24700 Brassica napus HOM05D001016 ORTHO05D004071 7.1e-19 96.7 48 93.8
A09p36380 Brassica napus HOM05D001016 ORTHO05D004071 7.1e-19 96.7 48 93.8
C03p76400 Brassica napus HOM05D001016 ORTHO05D004071 7.1e-19 96.7 48 93.8
C05p28950 Brassica napus HOM05D001016 ORTHO05D004071 7.1e-19 96.7 48 93.8
BolC3t19895H Brassica oleracea HOM05D001016 ORTHO05D004071 7.1e-19 96.7 48 93.8
BolC5t31617H Brassica oleracea HOM05D001016 ORTHO05D004071 7.1e-19 96.7 48 93.8
BraA08t34425Z Brassica rapa HOM05D001016 ORTHO05D004071 7.1e-19 96.7 48 93.8
BraA09t39162Z Brassica rapa HOM05D001016 ORTHO05D004071 7.1e-19 96.7 48 93.8
Carub.0004s1627 Capsella rubella HOM05D001016 ORTHO05D004071 7.1e-19 96.7 48 93.8
Duzib192G0341 Durio zibethinus HOM05D001016 ORTHO05D004071 7.1e-19 96.7 48 93.8
Duzib235G1429 Durio zibethinus HOM05D001016 ORTHO05D004071 7.1e-19 96.7 48 93.8
Thhalv10007796m.g Eutrema salsugineum HOM05D001016 ORTHO05D004071 7.1e-19 96.7 48 93.8
Sp1g25980 Schrenkiella parvula HOM05D001016 ORTHO05D004071 7.1e-19 96.7 48 93.8
Sp4g16860 Schrenkiella parvula HOM05D001016 ORTHO05D004071 7.1e-19 96.7 48 93.8
AL1G44020 Arabidopsis lyrata HOM05D001016 ORTHO05D004071 1.6e-18 95.5 48 91.7
Carub.0001s2834 Capsella rubella HOM05D001016 ORTHO05D004071 2.1e-18 95.1 48 91.7
Ca_18175_v3 Cicer arietinum L. HOM05D001016 ORTHO05D004071 2.1e-18 95.1 48 91.7
Atru.chr10.1195 Acer truncatum HOM05D001016 ORTHO05D004071 2.7e-18 94.7 48 89.6
CARHR029290 Cardamine hirsuta HOM05D001016 ORTHO05D004071 2.7e-18 94.7 47 91.5
CARHR128690 Cardamine hirsuta HOM05D001016 ORTHO05D004071 2.7e-18 94.7 48 91.7
Ciclev10015440m.g Citrus clementina HOM05D001016 ORTHO05D004071 2.7e-18 94.7 48 89.6
Manes.15G122600 Manihot esculenta HOM05D001016 ORTHO05D004071 2.7e-18 94.7 48 89.6
Medtr3g076630 Medicago truncatula HOM05D001016 ORTHO05D004071 2.7e-18 94.7 48 89.6
Psat7g082880 Pisum sativum HOM05D001016 ORTHO05D004071 2.7e-18 94.7 48 89.6
Potri.017G076500 Populus trichocarpa HOM05D001016 ORTHO05D004071 2.7e-18 94.7 48 89.6
Sabra17G0068500 Salix brachista HOM05D001016 ORTHO05D004071 2.7e-18 94.7 48 89.6
TPR.G9587 Trifolium pratense HOM05D001016 ORTHO05D004071 2.7e-18 94.7 48 89.6
Aqoxy1G01687 Aquilegia oxysepala HOM05D001016 ORTHO05D004071 3.5e-18 94.4 48 91.7
Potri.004G129800 Populus trichocarpa HOM05D001016 ORTHO05D004071 3.5e-18 94.4 47 89.4
Aa31LG10G6800 Aethionema arabicum HOM05D001016 ORTHO05D004071 4.6e-18 94.0 48 91.7
Manes.17G071300 Manihot esculenta HOM05D001016 ORTHO05D004071 4.6e-18 94.0 48 87.5
Nn3g20469 Nelumbo nucifera HOM05D001016 ORTHO05D004071 4.6e-18 94.0 48 89.6
CSS0003349 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D004071 6.0e-18 93.6 48 89.6
Cfa000933 Carpinus fangiana HOM05D001016 ORTHO05D004071 6.0e-18 93.6 48 89.6
ClCG03G006760 Citrullus lanatus HOM05D001016 ORTHO05D004071 6.0e-18 93.6 48 87.5
Haze_05616 Corylus avellana HOM05D001016 ORTHO05D004071 6.0e-18 93.6 48 89.6
MELO3C002746.2 Cucumis melo HOM05D001016 ORTHO05D004071 6.0e-18 93.6 48 87.5
CsaV3_1G032330 Cucumis sativus L. HOM05D001016 ORTHO05D004071 6.0e-18 93.6 48 87.5
Gohir.A06G196700 Gossypium hirsutum HOM05D001016 ORTHO05D004071 6.0e-18 93.6 48 89.6
Nn8g40138 Nelumbo nucifera HOM05D001016 ORTHO05D004071 6.0e-18 93.6 48 89.6
Sed0004585 Sechium edule HOM05D001016 ORTHO05D004071 6.0e-18 93.6 48 87.5
Sed0007894 Sechium edule HOM05D001016 ORTHO05D004071 6.0e-18 93.6 48 87.5
Ah.09g231770 Amaranthus hybridus HOM05D001016 ORTHO05D004071 7.9e-18 93.2 48 87.5
arahy.Tifrunner.gnm1.ann1.24C55C Arachis hypogaea HOM05D001016 ORTHO05D004071 7.9e-18 93.2 48 87.5
arahy.Tifrunner.gnm1.ann1.W1W0Y7 Arachis hypogaea HOM05D001016 ORTHO05D004071 7.9e-18 93.2 48 87.5
CANSAT35G1281 Cannabis sativa HOM05D001016 ORTHO05D004071 7.9e-18 93.2 48 87.5
CiPaw.09G122500 Carya illinoinensis HOM05D001016 ORTHO05D004071 7.9e-18 93.2 48 87.5
Glyma.05G141000 Glycine max HOM05D001016 ORTHO05D004071 7.9e-18 93.2 48 87.5
Glyma.08G096300 Glycine max HOM05D001016 ORTHO05D004071 7.9e-18 93.2 48 87.5
Glyma.14G092100 Glycine max HOM05D001016 ORTHO05D004071 7.9e-18 93.2 48 87.5
Lalb_Chr12g0206901 Lupinus albus HOM05D001016 ORTHO05D004071 7.9e-18 93.2 48 87.5
Sc09g0007490 Simmondsia chinensis HOM05D001016 ORTHO05D004071 7.9e-18 93.2 48 87.5
TAR626G0024 Trochodendron aralioides HOM05D001016 ORTHO05D004071 7.9e-18 93.2 48 89.6
CSS0036432 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D004071 1.0e-17 92.8 46 91.3
Migut.M00657 Erythranthe guttata HOM05D001016 ORTHO05D004071 1.0e-17 92.8 48 87.5
Glyma.17G231400 Glycine max HOM05D001016 ORTHO05D004071 1.0e-17 92.8 48 87.5
Gohir.A06G138500 Gossypium hirsutum HOM05D001016 ORTHO05D004071 1.0e-17 92.8 48 87.5
Oeu058433.1 Olea europaea HOM05D001016 ORTHO05D004071 1.0e-17 92.8 48 87.5
PGR031G1194 Punica granatum HOM05D001016 ORTHO05D004071 1.0e-17 92.8 48 87.5
THA.LOC104812671 Tarenaya hassleriana HOM05D001016 ORTHO05D004071 1.0e-17 92.8 46 91.3
THA.LOC104814305 Tarenaya hassleriana HOM05D001016 ORTHO05D004071 1.0e-17 92.8 48 87.5
COL.COLO4_31054 Corchorus olitorius HOM05D001016 ORTHO05D004071 1.3e-17 92.4 48 87.5
Gohir.D06G143200 Gossypium hirsutum HOM05D001016 ORTHO05D004071 1.3e-17 92.4 48 87.5
Gorai.010G167000 Gossypium raimondii HOM05D001016 ORTHO05D004071 1.3e-17 92.4 48 87.5
vmacro03332 Vaccinium macrocarpon HOM05D001016 ORTHO05D004071 1.3e-17 92.4 47 87.2
Thhalv10016731m.g Eutrema salsugineum HOM05D001016 ORTHO05D004071 1.8e-17 92.0 48 89.6
Sabra04G0087800 Salix brachista HOM05D001016 ORTHO05D004071 1.8e-17 92.0 47 87.2
Hund21544 Selenicereus undatus HOM05D001016 ORTHO05D004071 1.8e-17 92.0 48 85.4
Eucgr.E01909 Eucalyptus grandis HOM05D001016 ORTHO05D004071 2.3e-17 91.7 48 85.4
Gohir.D06G204200 Gossypium hirsutum HOM05D001016 ORTHO05D004071 2.3e-17 91.7 48 87.5
Gorai.010G238200 Gossypium raimondii HOM05D001016 ORTHO05D004071 2.3e-17 91.7 48 87.5
Lj1P1190T21 Lonicera japonica HOM05D001016 ORTHO05D027033 2.3e-17 91.7 48 85.4
Lj9P196T8 Lonicera japonica HOM05D001016 ORTHO05D004071 2.3e-17 91.7 48 85.4
QL05p057475 Quercus lobata HOM05D001016 ORTHO05D004071 2.3e-17 91.7 47 87.2
PGSC0003DMG400031370 Solanum tuberosum HOM05D001016 ORTHO05D004071 2.3e-17 91.7 48 85.4
MSTRG.12851 Avicennia marina HOM05D001016 ORTHO05D004071 3.9e-17 90.9 48 87.5
MSTRG.14272 Avicennia marina HOM05D001016 ORTHO05D004071 3.9e-17 90.9 48 85.4
CAN.G68.10 Capsicum annuum HOM05D001016 ORTHO05D004071 3.9e-17 90.9 48 85.4
CAN.G880.3 Capsicum annuum HOM05D001016 ORTHO05D004071 3.9e-17 90.9 48 85.4
AUR62002730 Chenopodium quinoa HOM05D001016 ORTHO05D004071 3.9e-17 90.9 48 87.5
AUR62002731 Chenopodium quinoa HOM05D001016 ORTHO05D004071 3.9e-17 90.9 48 87.5
AUR62022407 Chenopodium quinoa HOM05D001016 ORTHO05D004071 3.9e-17 90.9 48 87.5
HanXRQChr16g0525591 Helianthus annuus HOM05D001016 ORTHO05D004071 3.9e-17 90.9 48 85.4
Nitab4.5_0000348g0010 Nicotiana tabacum HOM05D001016 ORTHO05D004071 3.9e-17 90.9 48 85.4
Nitab4.5_0003681g0010 Nicotiana tabacum HOM05D001016 ORTHO05D004071 3.9e-17 90.9 48 85.4
Nitab4.5_0011303g0010 Nicotiana tabacum HOM05D001016 ORTHO05D004071 3.9e-17 90.9 48 85.4
Peaxi162Scf00394g00118 Petunia axillaris HOM05D001016 ORTHO05D004071 3.9e-17 90.9 48 85.4
Solyc04g008590.3 Solanum lycopersicum HOM05D001016 ORTHO05D004071 3.9e-17 90.9 48 85.4
Solyc08g016750.3 Solanum lycopersicum HOM05D001016 ORTHO05D004071 3.9e-17 90.9 48 85.4
Sopen04g003750 Solanum pennellii HOM05D001016 ORTHO05D004071 3.9e-17 90.9 48 85.4
Sopen08g007290 Solanum pennellii HOM05D001016 ORTHO05D004071 3.9e-17 90.9 48 85.4
PGSC0003DMG400007488 Solanum tuberosum HOM05D001016 ORTHO05D004071 3.9e-17 90.9 48 85.4
SGA_v2.0_scaffold4G02138 Striga asiatica HOM05D001016 ORTHO05D004071 3.9e-17 90.9 48 85.4
TAR624G0510 Trochodendron aralioides HOM05D001016 ORTHO05D004071 3.9e-17 90.9 48 83.3
EL10Ac8g19663 Beta vulgaris HOM05D001016 ORTHO05D004071 5.1e-17 90.5 48 85.4
C04p14250 Brassica napus HOM05D001016 ORTHO05D027033 5.1e-17 90.5 46 93.5
AUR62030181 Chenopodium quinoa HOM05D001016 ORTHO05D004071 5.1e-17 90.5 47 87.2
Migut.D01762 Erythranthe guttata HOM05D001016 ORTHO05D004071 5.1e-17 90.5 48 83.3
SalBow6G6196 Salvia bowleyana HOM05D001016 ORTHO05D004071 5.1e-17 90.5 48 85.4
SalBow8G3613 Salvia bowleyana HOM05D001016 ORTHO05D004071 5.1e-17 90.5 48 85.4
TWI09G0448 Tripterygium wilfordii HOM05D001016 ORTHO05D004071 5.1e-17 90.5 48 85.4
TWI53G0035 Tripterygium wilfordii HOM05D001016 ORTHO05D004071 5.1e-17 90.5 48 85.4
Lj2P303T12 Lonicera japonica HOM05D001016 ORTHO05D004071 6.7e-17 90.1 48 83.3
Phvul.006G165600 Phaseolus vulgaris HOM05D001016 ORTHO05D004071 6.7e-17 90.1 48 85.4
Thecc.06G148900 Theobroma cacao HOM05D001016 ORTHO05D004071 6.7e-17 90.1 48 87.5
SHI24902 Sapria himalayana HOM05D001016 ORTHO05D004071 8.7e-17 89.7 48 83.3
HanXRQChr17g0564651 Helianthus annuus HOM05D001016 ORTHO05D004071 1.1e-16 89.4 48 83.3
Lsat_1_v5_gn_4_29381 Lactuca sativa HOM05D001016 ORTHO05D004071 1.1e-16 89.4 48 83.3
Lalb_Chr07g0187621 Lupinus albus HOM05D001016 ORTHO05D004071 1.1e-16 89.4 48 83.3
Lalb_Chr13g0293861 Lupinus albus HOM05D001016 ORTHO05D004071 1.1e-16 89.4 48 87.5
Peaxi162Scf00317g00114 Petunia axillaris HOM05D001016 ORTHO05D004071 1.1e-16 89.4 48 83.3
Actinidia07704 Actinidia chinensis HOM05D001016 ORTHO05D004071 1.5e-16 89.0 48 85.4
Oeu052363.1 Olea europaea HOM05D001016 ORTHO05D004071 1.5e-16 89.0 48 83.3
SalBow8G3585 Salvia bowleyana HOM05D001016 ORTHO05D004071 1.5e-16 89.0 48 83.3
Lj6g0024917 Lotus japonicus HOM05D001016 ORTHO05D004071 1.9e-16 88.6 48 85.4
MBI18_g24472_MAGBIO Magnolia biondii HOM05D001016 ORTHO05D004071 1.9e-16 88.6 48 85.4
VMungo0540G0687 Vigna mungo HOM05D001016 ORTHO05D004071 1.9e-16 88.6 48 83.3
arahy.Tifrunner.gnm1.ann1.IZT7WB Arachis hypogaea HOM05D001016 ORTHO05D004071 2.5e-16 88.2 48 85.4
arahy.Tifrunner.gnm1.ann1.KY59Q5 Arachis hypogaea HOM05D001016 ORTHO05D004071 2.5e-16 88.2 48 85.4
Gohir.A05G147900 Gossypium hirsutum HOM05D001016 ORTHO05D004071 2.5e-16 88.2 48 87.5
Gohir.D05G150366 Gossypium hirsutum HOM05D001016 ORTHO05D004071 2.5e-16 88.2 48 87.5
Gohir.D05G150432 Gossypium hirsutum HOM05D001016 ORTHO05D004071 2.5e-16 88.2 48 87.5
Gorai.009G154500 Gossypium raimondii HOM05D001016 ORTHO05D004071 2.5e-16 88.2 48 87.5
SEGI_00381 Sequoiadendron giganteum HOM05D001016 ORTHO05D004071 2.5e-16 88.2 48 83.3
SEGI_07536 Sequoiadendron giganteum HOM05D001016 ORTHO05D004071 2.5e-16 88.2 48 83.3
SEGI_40402 Sequoiadendron giganteum HOM05D001016 ORTHO05D004071 2.5e-16 88.2 48 83.3
DCAR_003906 Daucus carota HOM05D001016 ORTHO05D004071 3.3e-16 87.8 48 83.3
DCAR_003907 Daucus carota HOM05D001016 ORTHO05D004071 3.3e-16 87.8 48 83.3
HanXRQChr04g0114361 Helianthus annuus HOM05D001016 ORTHO05D004071 3.3e-16 87.8 48 83.3
SGA_v2.0_scaffold130G34239 Striga asiatica HOM05D001016 ORTHO05D004071 3.3e-16 87.8 48 83.3
Cc03_g15970 Coffea canephora HOM05D001016 ORTHO05D004071 4.3e-16 87.4 46 82.6
Dinv32238 Davidia involucrata HOM05D001016 ORTHO05D004071 4.3e-16 87.4 48 85.4
PSO017G6714 Papaver somniferum HOM05D001016 ORTHO05D004071 4.3e-16 87.4 48 83.3
PSO384G1207 Papaver somniferum HOM05D001016 ORTHO05D004071 4.3e-16 87.4 48 83.3
PSO541G5613 Papaver somniferum HOM05D001016 ORTHO05D004071 4.3e-16 87.4 48 83.3
PSO675G8635 Papaver somniferum HOM05D001016 ORTHO05D004071 4.3e-16 87.4 48 83.3
AUR62042164 Chenopodium quinoa HOM05D001016 ORTHO05D004071 5.7e-16 87.0 48 83.3
Prupe.4G082200 Prunus persica HOM05D001016 ORTHO05D004071 5.7e-16 87.0 48 85.4
GSVIVG01026353001 Vitis vinifera HOM05D001016 ORTHO05D004071 5.7e-16 87.0 46 84.8
CDE01G0568 Ceratophyllum demersum HOM05D001016 ORTHO05D004071 7.4e-16 86.7 48 83.3
Rhsim13G0114600 Rhododendron simsii HOM05D001016 ORTHO05D004071 7.4e-16 86.7 48 81.2
Lsat_1_v5_gn_7_28120 Lactuca sativa HOM05D001016 ORTHO05D004071 9.6e-16 86.3 48 81.2
DCAR_007887 Daucus carota HOM05D001016 ORTHO05D004071 1.3e-15 85.9 48 81.2
ECA234G4093 Erigeron canadensis HOM05D001016 ORTHO05D004071 1.3e-15 85.9 48 81.2
FvH4_3g05390 Fragaria vesca HOM05D001016 ORTHO05D004071 1.3e-15 85.9 48 83.3
FAN11G0472 Fragaria x ananassa HOM05D001016 ORTHO05D004071 1.3e-15 85.9 48 83.3
FAN16G1622 Fragaria x ananassa HOM05D001016 ORTHO05D004071 1.3e-15 85.9 48 83.3
RcHm_v2.0_Chr5g0014341 Rosa chinensis HOM05D001016 ORTHO05D004071 1.3e-15 85.9 48 83.3
HPP92_001887 Vanilla planifolia HOM05D001016 ORTHO05D004071 1.3e-15 85.9 48 81.2
Cc05_g10200 Coffea canephora HOM05D001016 ORTHO05D004071 1.6e-15 85.5 46 82.6
ECA234G4142 Erigeron canadensis HOM05D001016 ORTHO05D004071 1.6e-15 85.5 48 79.2
MD05G1282600 Malus domestica HOM05D001016 ORTHO05D004071 1.6e-15 85.5 48 83.3
Lj4g0002862 Lotus japonicus HOM05D001016 ORTHO05D004071 2.1e-15 85.1 48 83.3
MD10G1260900 Malus domestica HOM05D001016 ORTHO05D004071 2.1e-15 85.1 47 85.1
FAN21G2759 Fragaria x ananassa HOM05D001016 ORTHO05D004071 3.7e-15 84.3 48 81.2
FAN25G0750 Fragaria x ananassa HOM05D001016 ORTHO05D004071 3.7e-15 84.3 48 81.2
Os12g0616900 Oryza sativa ssp. japonica HOM05D001016 ORTHO05D004071 9.0e-14 79.7 48 77.1
Zm00001eb031900 Zea mays HOM05D001016 ORTHO05D004071 9.0e-14 79.7 48 77.1
ATR1098G091 Amborella trichopoda HOM05D001016 ORTHO05D004071 1.2e-13 79.3 46 76.1
Rhsim13G0114500 Rhododendron simsii HOM05D001016 ORTHO05D004071 2.0e-13 78.6 47 72.3
Zm00001eb050410 Zea mays HOM05D001016 ORTHO05D004071 2.6e-13 78.2 46 78.3
Os03g0645100 Oryza sativa ssp. japonica HOM05D001016 ORTHO05D004071 4.5e-13 77.4 48 75.0
AagrBONN_evm.TU.Sc2ySwM_228.4010 Anthoceros agrestis HOM05D001016 ORTHO05D004071 1.7e-12 75.5 48 75.0
AagrBONN_evm.TU.Sc2ySwM_369.84 Anthoceros agrestis HOM05D001016 ORTHO05D004071 8.4e-12 73.2 48 72.9
Dinv30760 Davidia involucrata HOM05D001016 ORTHO05D027033 1.4e-11 72.4 35 85.7
Mapoly0052s0126 Marchantia polymorpha HOM05D001016 ORTHO05D004071 4.2e-11 70.9 45 75.6
Pp3c24_19300 Physcomitrium patens HOM05D001016 ORTHO05D004071 4.6e-10 67.4 46 69.6
Pp3c8_21910 Physcomitrium patens HOM05D001016 ORTHO05D004071 4.6e-10 67.4 46 69.6
SMO201G0070 Selaginella moellendorffii HOM05D001016 ORTHO05D004071 1.0e-09 66.2 47 66.0
BcaB02g09524 Brassica carinata HOM05D001016 ORTHO05D026968 1.5e-08 62.4 31 93.5
SMO171G0025 Selaginella moellendorffii HOM05D001016 ORTHO05D004071 1.9e-08 62.0 47 63.8
SMO201G0028 Selaginella moellendorffii HOM05D001016 ORTHO05D004071 1.9e-08 62.0 47 63.8
SMO353G0346 Selaginella moellendorffii HOM05D001016 ORTHO05D004071 1.9e-08 62.0 47 63.8
BolC4t23010H Brassica oleracea HOM05D001016 ORTHO05D026968 3.3e-08 61.2 34 88.2
Dinv26662 Davidia involucrata HOM05D001016 ORTHO05D004071 7.4e-08 60.1 30 90.0
Actinidia35180 Actinidia chinensis HOM05D001016 ORTHO05D056670 1.6e-07 58.9 30 86.7


User provided reference genes

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