Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11519 Brassica carinata HOM05D005274 ORTHO05D006485 2.0e-101 372.5 192 100.0
BolC4t23029H Brassica oleracea HOM05D005274 ORTHO05D006485 2.6e-93 345.5 251 76.5
C04p14460 Brassica napus HOM05D005274 ORTHO05D006485 4.9e-76 288.1 251 67.3
C03p22390 Brassica napus HOM05D005274 ORTHO05D006485 2.7e-74 282.3 283 58.0
BcaB01g06368 Brassica carinata HOM05D005274 ORTHO05D006485 4.6e-74 281.6 275 58.9
A03p19190 Brassica napus HOM05D005274 ORTHO05D006485 7.9e-74 280.8 283 57.6
BraA03t11174Z Brassica rapa HOM05D005274 ORTHO05D006485 7.9e-74 280.8 283 57.6
Thhalv10017887m.g Eutrema salsugineum HOM05D005274 ORTHO05D006485 1.4e-70 270.0 286 56.3
CARHR128660 Cardamine hirsuta HOM05D005274 ORTHO05D006485 2.9e-68 262.3 286 54.2
BcaC01g05789 Brassica carinata HOM05D005274 ORTHO05D006485 1.9e-64 249.6 283 53.7
BolC3t14622H Brassica oleracea HOM05D005274 ORTHO05D006485 1.9e-64 249.6 283 53.7
Carub.0004s1624 Capsella rubella HOM05D005274 ORTHO05D006485 9.7e-64 247.3 131 91.6
Sp4g16830 Schrenkiella parvula HOM05D005274 ORTHO05D006485 9.7e-64 247.3 286 53.8
AL4G30540 Arabidopsis lyrata HOM05D005274 ORTHO05D006485 6.3e-63 244.6 131 89.3
AT2G34570 Arabidopsis thaliana HOM05D005274 ORTHO05D006485 4.5e-61 238.4 131 86.3
Aa31LG10G6820 Aethionema arabicum HOM05D005274 ORTHO05D006485 2.2e-52 209.5 317 43.5
vmacro18391 Vaccinium macrocarpon HOM05D005274 ORTHO05D006485 2.4e-46 189.5 133 67.7
Rhsim08G0038500 Rhododendron simsii HOM05D005274 ORTHO05D006485 3.1e-46 189.1 133 66.9
THA.LOC104802536 Tarenaya hassleriana HOM05D005274 ORTHO05D006485 3.1e-46 189.1 182 56.0
Cpa.g.sc70.54 Carica papaya HOM05D005274 ORTHO05D006485 7.7e-45 184.5 182 53.3
Gorai.007G073200 Gossypium raimondii HOM05D005274 ORTHO05D006485 3.8e-44 182.2 134 64.2
HPP92_002470 Vanilla planifolia HOM05D005274 ORTHO05D006485 5.0e-44 181.8 143 57.3
Gohir.D11G068400 Gossypium hirsutum HOM05D005274 ORTHO05D006485 6.5e-44 181.4 134 64.2
Manes.11G112500 Manihot esculenta HOM05D005274 ORTHO05D006485 8.5e-44 181.0 133 60.2
Gohir.A11G064100 Gossypium hirsutum HOM05D005274 ORTHO05D006485 1.1e-43 180.6 134 64.2
Cc00_g24660 Coffea canephora HOM05D005274 ORTHO05D006485 1.9e-43 179.9 133 61.7
Cc06_g13990 Coffea canephora HOM05D005274 ORTHO05D006485 1.9e-43 179.9 133 62.4
Oeu034171.3 Olea europaea HOM05D005274 ORTHO05D006485 1.9e-43 179.9 133 62.4
Glyma.02G271800 Glycine max HOM05D005274 ORTHO05D006485 2.5e-43 179.5 133 62.4
Lalb_Chr10g0096401 Lupinus albus HOM05D005274 ORTHO05D006485 5.5e-43 178.3 133 60.9
Oeu020806.2 Olea europaea HOM05D005274 ORTHO05D006485 5.5e-43 178.3 133 62.4
Dinv33272 Davidia involucrata HOM05D005274 ORTHO05D006485 7.2e-43 177.9 133 61.7
Lj9A368G50 Lonicera japonica HOM05D005274 ORTHO05D006485 7.2e-43 177.9 134 60.4
Migut.B00249 Erythranthe guttata HOM05D005274 ORTHO05D006485 1.2e-42 177.2 133 60.9
Glyma.14G044800 Glycine max HOM05D005274 ORTHO05D006485 1.2e-42 177.2 133 60.2
CiPaw.04G000800 Carya illinoinensis HOM05D005274 ORTHO05D006485 1.6e-42 176.8 134 62.7
VMungo1309G1271 Vigna mungo HOM05D005274 ORTHO05D006485 1.6e-42 176.8 133 61.7
Cfa007146 Carpinus fangiana HOM05D005274 ORTHO05D006485 2.1e-42 176.4 134 60.4
Ciclev10016162m.g Citrus clementina HOM05D005274 ORTHO05D006485 2.7e-42 176.0 182 51.6
HanXRQChr07g0200241 Helianthus annuus HOM05D005274 ORTHO05D006485 2.7e-42 176.0 193 48.7
PGSC0003DMG400005779 Solanum tuberosum HOM05D005274 ORTHO05D006485 2.7e-42 176.0 182 51.1
Sabra04G0133600 Salix brachista HOM05D005274 ORTHO05D006485 4.7e-42 175.3 197 49.2
TPR.G27812 Trifolium pratense HOM05D005274 ORTHO05D006485 4.7e-42 175.3 133 58.6
Lsat_1_v5_gn_2_86720 Lactuca sativa HOM05D005274 ORTHO05D006485 8.0e-42 174.5 193 49.2
Medtr2g097630 Medicago truncatula HOM05D005274 ORTHO05D006485 8.0e-42 174.5 133 59.4
Potri.004G197200 Populus trichocarpa HOM05D005274 ORTHO05D006485 8.0e-42 174.5 197 48.7
Thecc.04G049000 Theobroma cacao HOM05D005274 ORTHO05D006485 1.0e-41 174.1 133 61.7
Psat2g056880 Pisum sativum HOM05D005274 ORTHO05D006485 1.4e-41 173.7 133 59.4
arahy.Tifrunner.gnm1.ann1.5GP605 Arachis hypogaea HOM05D005274 ORTHO05D006485 2.3e-41 172.9 133 59.4
Peaxi162Scf00102g01534 Petunia axillaris HOM05D005274 ORTHO05D006485 2.3e-41 172.9 188 50.0
SGA_v2.0_scaffold32G13165 Striga asiatica HOM05D005274 ORTHO05D006485 2.3e-41 172.9 182 51.6
arahy.Tifrunner.gnm1.ann1.T7P6Q4 Arachis hypogaea HOM05D005274 ORTHO05D006485 3.0e-41 172.6 133 58.6
CSS0033174 Camellia sinensis var. sinensis HOM05D005274 ORTHO05D006485 3.0e-41 172.6 133 60.9
Solyc08g008040.3 Solanum lycopersicum HOM05D005274 ORTHO05D006485 3.9e-41 172.2 184 50.0
Sopen08g003920 Solanum pennellii HOM05D005274 ORTHO05D006485 3.9e-41 172.2 184 50.0
CANSAT54G1155 Cannabis sativa HOM05D005274 ORTHO05D006485 5.2e-41 171.8 134 56.7
FAN15G2064 Fragaria x ananassa HOM05D005274 ORTHO05D006485 6.7e-41 171.4 137 59.9
SalBow6G5022 Salvia bowleyana HOM05D005274 ORTHO05D006485 8.8e-41 171.0 188 48.9
QL02p069234 Quercus lobata HOM05D005274 ORTHO05D006485 1.1e-40 170.6 190 50.0
RcHm_v2.0_Chr6g0267991 Rosa chinensis HOM05D005274 ORTHO05D006485 1.1e-40 170.6 137 59.9
FvH4_2g10500 Fragaria vesca HOM05D005274 ORTHO05D006485 1.5e-40 170.2 137 59.1
FAN27G1266 Fragaria x ananassa HOM05D005274 ORTHO05D006485 1.5e-40 170.2 137 59.1
CAN.G792.79 Capsicum annuum HOM05D005274 ORTHO05D006485 2.0e-40 169.9 192 51.0
SalBow6G6215 Salvia bowleyana HOM05D005274 ORTHO05D006485 2.0e-40 169.9 188 48.4
Medtr5g071380 Medicago truncatula HOM05D005274 ORTHO05D006485 2.6e-40 169.5 133 57.1
Ca_26258_v3 Cicer arietinum L. HOM05D005274 ORTHO05D006485 3.3e-40 169.1 133 57.1
Duzib187G0989 Durio zibethinus HOM05D005274 ORTHO05D006485 3.3e-40 169.1 181 51.9
Sed0000255 Sechium edule HOM05D005274 ORTHO05D006485 3.3e-40 169.1 197 50.3
LjContig00564g0024425 Lotus japonicus HOM05D005274 ORTHO05D006485 7.4e-40 167.9 133 58.6
FAN24G2993 Fragaria x ananassa HOM05D005274 ORTHO05D006485 9.7e-40 167.5 137 58.4
Nitab4.5_0004836g0020 Nicotiana tabacum HOM05D005274 ORTHO05D006485 9.7e-40 167.5 188 49.5
GSVIVG01032972001 Vitis vinifera HOM05D005274 ORTHO05D006485 1.3e-39 167.2 206 46.6
MD09G1264600 Malus domestica HOM05D005274 ORTHO05D006485 1.7e-39 166.8 137 58.4
ECA238G2078 Erigeron canadensis HOM05D005274 ORTHO05D006485 2.2e-39 166.4 188 47.3
MELO3C005096.2 Cucumis melo HOM05D005274 ORTHO05D006485 3.7e-39 165.6 133 57.9
DCAR_022112 Daucus carota HOM05D005274 ORTHO05D006485 3.7e-39 165.6 191 48.7
Eucgr.I01592 Eucalyptus grandis HOM05D005274 ORTHO05D006485 3.7e-39 165.6 133 57.9
Potri.009G159400 Populus trichocarpa HOM05D005274 ORTHO05D006485 8.2e-39 164.5 129 57.4
MSTRG.20092 Avicennia marina HOM05D005274 ORTHO05D006485 1.4e-38 163.7 182 48.9
Atru.chr6.2707 Acer truncatum HOM05D005274 ORTHO05D006485 1.8e-38 163.3 191 46.1
TAR624G0372 Trochodendron aralioides HOM05D005274 ORTHO05D006485 3.1e-38 162.5 192 47.4
Cc00_g27920 Coffea canephora HOM05D005274 ORTHO05D006485 4.1e-38 162.2 158 50.6
Nitab4.5_0006090g0030 Nicotiana tabacum HOM05D005274 ORTHO05D006485 5.3e-38 161.8 193 48.2
unitig_744.g24245 Utricularia gibba HOM05D005274 ORTHO05D006485 5.3e-38 161.8 182 47.3
Nn8g40353 Nelumbo nucifera HOM05D005274 ORTHO05D006485 7.0e-38 161.4 182 46.7
SHI31386 Sapria himalayana HOM05D005274 ORTHO05D006485 7.0e-38 161.4 131 57.3
PSO063G1622 Papaver somniferum HOM05D005274 ORTHO05D006485 9.1e-38 161.0 180 48.3
PSO017G0788 Papaver somniferum HOM05D005274 ORTHO05D006485 1.2e-37 160.6 180 48.3
MD08G1181300 Malus domestica HOM05D005274 ORTHO05D006485 1.6e-37 160.2 137 54.7
SHI33526 Sapria himalayana HOM05D005274 ORTHO05D006485 1.6e-37 160.2 131 56.5
TAR381G1230 Trochodendron aralioides HOM05D005274 ORTHO05D006485 2.0e-37 159.8 190 47.9
ClCG01G008500 Citrullus lanatus HOM05D005274 ORTHO05D006485 5.9e-37 158.3 210 43.8
CsaV3_5G024970 Cucumis sativus L. HOM05D005274 ORTHO05D006485 2.2e-36 156.4 194 46.9
PGR142G3427 Punica granatum HOM05D005274 ORTHO05D006485 5.0e-36 155.2 133 52.6
MD16G1246600 Malus domestica HOM05D005274 ORTHO05D006485 1.1e-35 154.1 138 53.6
AUR62009346 Chenopodium quinoa HOM05D005274 ORTHO05D006485 1.5e-35 153.7 134 56.0
Os02g0468200 Oryza sativa ssp. japonica HOM05D005274 ORTHO05D006485 1.5e-35 153.7 135 52.6
Phvul.005G158400 Phaseolus vulgaris HOM05D005274 ORTHO05D006485 5.5e-35 151.8 133 50.4
Hma1.2p1_0474F.1_g160740 Hydrangea macrophylla HOM05D005274 ORTHO05D006485 7.2e-35 151.4 128 57.8
AUR62017870 Chenopodium quinoa HOM05D005274 ORTHO05D006485 9.4e-35 151.0 134 55.2
Aqoxy5G02491 Aquilegia oxysepala HOM05D005274 ORTHO05D006485 1.2e-34 150.6 192 43.8
Prupe.5G024800 Prunus persica HOM05D005274 ORTHO05D006485 2.1e-34 149.8 137 50.4
Hund29750 Selenicereus undatus HOM05D005274 ORTHO05D006485 2.1e-34 149.8 134 53.7
Hund29752 Selenicereus undatus HOM05D005274 ORTHO05D006485 2.1e-34 149.8 134 53.7
SEGI_17090 Sequoiadendron giganteum HOM05D005274 ORTHO05D006485 2.1e-34 149.8 131 51.9
Sc14g0002660 Simmondsia chinensis HOM05D005274 ORTHO05D006485 3.6e-34 149.1 189 44.4
PGSC0003DMG400011003 Solanum tuberosum HOM05D005274 ORTHO05D006485 4.7e-34 148.7 192 46.4
ATR1136G175 Amborella trichopoda HOM05D005274 ORTHO05D006485 8.2e-31 137.9 133 49.6
Zm00001eb319780 Zea mays HOM05D005274 ORTHO05D006485 1.1e-30 137.5 187 40.1
EL10Ac6g13414 Beta vulgaris HOM05D005274 ORTHO05D006485 2.4e-30 136.3 192 40.6
Mapoly0006s0036 Marchantia polymorpha HOM05D005274 ORTHO05D006485 4.1e-30 135.6 133 49.6
AagrBONN_evm.TU.Sc2ySwM_228.2974 Anthoceros agrestis HOM05D005274 ORTHO05D006485 1.2e-29 134.0 178 42.1
COL.COLO4_13388 Corchorus olitorius HOM05D005274 ORTHO05D006485 2.0e-29 133.3 107 56.1
Pp3c2_27880 Physcomitrium patens HOM05D005274 ORTHO05D006485 2.7e-29 132.9 191 40.8
TWI32G1102 Tripterygium wilfordii HOM05D005274 ORTHO05D006485 4.5e-29 132.1 260 35.8
SMO347G0017 Selaginella moellendorffii HOM05D005274 ORTHO05D006485 3.8e-28 129.0 191 41.9
Cc00_g29040 Coffea canephora HOM05D005274 ORTHO05D006485 2.5e-27 126.3 88 65.9
Nitab4.5_0000568g0280 Nicotiana tabacum HOM05D005274 ORTHO05D006485 1.2e-24 117.5 124 48.4
AUR62037816 Chenopodium quinoa HOM05D005274 ORTHO05D006485 1.5e-24 117.1 133 45.9
CBR_g8346 Chara braunii HOM05D005274 ORTHO05D006485 7.5e-24 114.8 189 39.2
Ah.10g032810 Amaranthus hybridus HOM05D005274 ORTHO05D006485 1.7e-23 113.6 133 42.9
Actinidia19548 Actinidia chinensis HOM05D005274 ORTHO05D006485 5.9e-21 105.1 95 52.6
Sopen10g034190 Solanum pennellii HOM05D005274 ORTHO05D006485 4.2e-19 99.0 168 39.3
Solyc10g084740.3 Solanum lycopersicum HOM05D005274 ORTHO05D006485 1.6e-18 97.1 225 34.2
MCO15G315 Micromonas commoda HOM05D005274 ORTHO05D006485 4.0e-17 92.4 201 35.3
Cre11.g480800 Chlamydomonas reinhardtii HOM05D005274 ORTHO05D006485 8.9e-17 91.3 180 29.4
Sabra10G0082800 Salix brachista HOM05D005274 ORTHO05D006485 1.5e-16 90.5 106 40.6
Sabra02G0148900 Salix brachista HOM05D005274 ORTHO05D006485 9.8e-16 87.8 106 39.6
Phvul.005G025400 Phaseolus vulgaris HOM05D005274 ORTHO05D006485 1.0e-12 77.8 130 33.1
Sabra07G0096200 Salix brachista HOM05D005274 ORTHO05D006765 1.1e-11 74.3 64 51.6
CDE04G1865 Ceratophyllum demersum HOM05D000386 ORTHO05D000406 4.7e-10 68.9 67 46.3
PRCOL_00002591 Prasinoderma coloniale HOM05D005274 ORTHO05D006485 4.1e-06 55.8 134 31.3


User provided reference genes

Program Settings