Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11516 Brassica carinata HOM05D008587 ORTHO05D010485 2.1e-155 552.4 289 100.0
C04p14490 Brassica napus HOM05D008587 ORTHO05D010485 2.1e-155 552.4 289 100.0
BolC4t23032H Brassica oleracea HOM05D008587 ORTHO05D010485 2.1e-155 552.4 289 100.0
A05p11130 Brassica napus HOM05D008587 ORTHO05D010485 6.0e-150 534.3 289 96.5
BraA05t20060Z Brassica rapa HOM05D008587 ORTHO05D010485 6.0e-150 534.3 289 96.5
BcaB02g09532 Brassica carinata HOM05D008587 ORTHO05D010485 5.1e-141 504.6 289 92.0
AL4G30510 Arabidopsis lyrata HOM05D008587 ORTHO05D010485 7.8e-134 480.7 291 87.3
Sp4g16800 Schrenkiella parvula HOM05D008587 ORTHO05D010485 3.3e-132 475.3 289 87.5
Thhalv10017034m.g Eutrema salsugineum HOM05D008587 ORTHO05D010485 2.4e-130 469.2 288 86.1
Carub.0004s1621 Capsella rubella HOM05D008587 ORTHO05D010485 3.8e-128 461.8 289 83.7
AT2G34540 Arabidopsis thaliana HOM05D008587 ORTHO05D010485 2.1e-126 456.1 289 82.0
CARHR128630 Cardamine hirsuta HOM05D008587 ORTHO05D010485 1.3e-125 453.4 290 83.4
Aa31LG10G6860 Aethionema arabicum HOM05D008587 ORTHO05D010485 4.5e-105 385.2 291 74.2
THA.LOC104814298 Tarenaya hassleriana HOM05D008587 ORTHO05D010485 5.0e-88 328.6 296 63.2
BcaB06g28781 Brassica carinata HOM05D008587 ORTHO05D010485 3.8e-56 222.6 210 62.9
BolC4t27854H Brassica oleracea HOM05D008587 ORTHO05D010485 6.3e-43 178.7 128 74.2
Cpa.g.sc166.5 Carica papaya HOM05D008587 ORTHO05D010485 4.1e-42 176.0 242 46.3
Ciclev10016244m.g Citrus clementina HOM05D008587 ORTHO05D010485 3.7e-35 152.9 250 43.6
Manes.17G070000 Manihot esculenta HOM05D008587 ORTHO05D010485 5.4e-34 149.1 214 43.0
Atru.chr10.1227 Acer truncatum HOM05D008587 ORTHO05D010485 1.7e-32 144.1 249 41.8
Gorai.010G166500 Gossypium raimondii HOM05D008587 ORTHO05D010485 4.0e-29 132.9 294 36.4
Gohir.A06G137500 Gossypium hirsutum HOM05D008587 ORTHO05D010485 4.4e-28 129.4 299 36.1
Gohir.D06G142700 Gossypium hirsutum HOM05D008587 ORTHO05D010485 4.4e-28 129.4 294 36.1
Cfa000946 Carpinus fangiana HOM05D008587 ORTHO05D010485 3.7e-27 126.3 228 37.7
Potri.004G064900 Populus trichocarpa HOM05D008587 ORTHO05D010485 4.6e-25 119.4 232 40.5
Prupe.4G080600 Prunus persica HOM05D008587 ORTHO05D010485 7.8e-25 118.6 241 38.2
TWI73G0974 Tripterygium wilfordii HOM05D008587 ORTHO05D010485 1.3e-24 117.9 238 37.4
QL05p058141 Quercus lobata HOM05D008587 ORTHO05D010485 2.3e-24 117.1 269 32.7
TWI73G0910 Tripterygium wilfordii HOM05D008587 ORTHO05D010485 6.6e-24 115.5 279 34.8
Sabra04G0043200 Salix brachista HOM05D008587 ORTHO05D010485 2.5e-23 113.6 237 36.3
QL05p058149 Quercus lobata HOM05D008587 ORTHO05D010485 5.6e-23 112.5 268 31.3
Duzib235G1124 Durio zibethinus HOM05D008587 ORTHO05D010485 3.1e-21 106.7 285 33.0
CiPaw.09G123400 Carya illinoinensis HOM05D008587 ORTHO05D010485 8.9e-21 105.1 168 39.9
Haze_05596 Corylus avellana HOM05D008587 ORTHO05D010485 4.4e-20 102.8 214 35.5
Thecc.06G150600 Theobroma cacao HOM05D008587 ORTHO05D010485 1.3e-19 101.3 245 35.1
Cfa000945 Carpinus fangiana HOM05D008587 ORTHO05D010485 5.4e-18 95.9 280 33.6
RcHm_v2.0_Chr5g0014151 Rosa chinensis HOM05D014465 ORTHO05D010485 3.5e-17 93.2 293 33.4
FvH4_3g05550 Fragaria vesca HOM05D014465 ORTHO05D010485 1.0e-16 91.7 214 34.1
FAN11G1722 Fragaria x ananassa HOM05D014465 ORTHO05D010485 2.3e-16 90.5 206 32.5
Haze_05597 Corylus avellana HOM05D008587 ORTHO05D010485 3.9e-16 89.7 261 33.7
FAN16G1258 Fragaria x ananassa HOM05D014465 ORTHO05D010485 6.6e-16 89.0 231 32.0
FAN16G1026 Fragaria x ananassa HOM05D014465 ORTHO05D010485 8.6e-16 88.6 296 29.4
COL.COLO4_31072 Corchorus olitorius HOM05D008587 ORTHO05D010485 1.6e-14 84.3 292 34.6
RcHm_v2.0_Chr5g0014161 Rosa chinensis HOM05D014465 ORTHO05D010485 2.1e-14 84.0 229 31.9
QL05p058191 Quercus lobata HOM05D008587 ORTHO05D010485 6.2e-14 82.4 262 29.4
CiPaw.09G123600 Carya illinoinensis HOM05D008587 ORTHO05D010485 8.1e-14 82.0 201 33.8
Cfa000943 Carpinus fangiana HOM05D008587 ORTHO05D010485 1.4e-13 81.3 146 38.4
QL05p058118 Quercus lobata HOM05D008587 ORTHO05D010485 2.0e-12 77.4 170 38.2
BolC1t05877H Brassica oleracea HOM05D008587 ORTHO05D010485 4.4e-12 76.3 39 97.4
CANSAT35G0142 Cannabis sativa HOM05D008587 ORTHO05D010485 9.9e-12 75.1 125 37.6
Nitab4.5_0009201g0030 Nicotiana tabacum HOM05D007839 ORTHO05D009924 2.4e-10 70.5 94 45.7
Cfa000944 Carpinus fangiana HOM05D007839 ORTHO05D009924 1.2e-09 68.2 116 34.5
TWI73G0350 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 1.6e-09 67.8 164 34.8
Nitab4.5_0000869g0080 Nicotiana tabacum HOM05D007839 ORTHO05D009924 3.5e-09 66.6 119 37.8
Peaxi162Scf00008g02916 Petunia axillaris HOM05D007839 ORTHO05D009924 3.5e-09 66.6 90 44.4
ATR1091G096 Amborella trichopoda HOM05D000884 ORTHO05D002127 6.0e-09 65.9 105 38.1
TWI09G0569 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 6.0e-09 65.9 123 39.0
TWI73G0663 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 3.9e-08 63.2 129 34.9
CiPaw.09G123500 Carya illinoinensis HOM05D007839 ORTHO05D009924 8.7e-08 62.0 115 39.1
MBI07_g37165_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 8.7e-08 62.0 65 44.6
MELO3C007133.2 Cucumis melo HOM05D007839 ORTHO05D009924 1.9e-07 60.8 147 32.0
ClCG01G024620 Citrullus lanatus HOM05D007839 ORTHO05D009924 3.3e-07 60.1 144 31.2
Cpa.g.sc166.6 Carica papaya HOM05D007839 ORTHO05D009924 4.3e-07 59.7 109 37.6
COL.COLO4_31073 Corchorus olitorius HOM05D007839 ORTHO05D009924 4.3e-07 59.7 129 31.0
MELO3C035710.2 Cucumis melo HOM05D030426 ORTHO05D029164 4.3e-07 59.7 128 31.2
QL05p058124 Quercus lobata HOM05D007839 ORTHO05D009924 5.6e-07 59.3 117 40.2
RcHm_v2.0_Chr5g0014141 Rosa chinensis HOM05D007839 ORTHO05D009924 5.6e-07 59.3 120 36.7
Sopen02g019500 Solanum pennellii HOM05D007839 ORTHO05D009924 5.6e-07 59.3 123 40.7
CSS0048482 Camellia sinensis var. sinensis HOM05D007839 ORTHO05D009924 7.3e-07 58.9 92 39.1
CANSAT35G0562 Cannabis sativa HOM05D007839 ORTHO05D009924 7.3e-07 58.9 99 40.4
CARHR128620 Cardamine hirsuta HOM05D007839 ORTHO05D009924 7.3e-07 58.9 144 31.9
Glyma.15G094000 Glycine max HOM05D007839 ORTHO05D009924 7.3e-07 58.9 135 34.1
Sed0023114 Sechium edule HOM05D007839 ORTHO05D009924 7.3e-07 58.9 144 29.9
Manes.17G069900 Manihot esculenta HOM05D007839 ORTHO05D009924 9.6e-07 58.5 115 38.3
CiPaw.09G123700 Carya illinoinensis HOM05D007839 ORTHO05D009924 1.3e-06 58.2 90 35.6
MBI07_g35861_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 1.3e-06 58.2 60 46.7
Prupe.4G080500 Prunus persica HOM05D007839 ORTHO05D009924 1.3e-06 58.2 141 32.6
FAN25G0862 Fragaria x ananassa HOM05D014465 ORTHO05D010485 1.6e-06 57.8 235 26.8
FAN25G2871 Fragaria x ananassa HOM05D014465 ORTHO05D010485 1.6e-06 57.8 235 26.8
GSVIVG01021451001 Vitis vinifera HOM05D007839 ORTHO05D009924 2.1e-06 57.4 71 40.8
Atru.chr10.1228 Acer truncatum HOM05D007839 ORTHO05D009924 2.8e-06 57.0 180 31.1
FvH4_3g05560 Fragaria vesca HOM05D007839 ORTHO05D009924 3.6e-06 56.6 143 33.6
Lalb_Chr07g0188571 Lupinus albus HOM05D018405 ORTHO05D010485 4.8e-06 56.2 227 27.3
Medtr2g019410 Medicago truncatula HOM05D007839 ORTHO05D009924 4.8e-06 56.2 127 33.1
Thecc.06G150800 Theobroma cacao HOM05D007839 ORTHO05D009924 4.8e-06 56.2 159 27.7
FAN11G2724 Fragaria x ananassa HOM05D000499 ORTHO05D006980 6.2e-06 55.8 143 33.6
FAN25G1788 Fragaria x ananassa HOM05D007839 ORTHO05D009924 6.2e-06 55.8 145 35.2
Sabra04G0043100 Salix brachista HOM05D007839 ORTHO05D009924 6.2e-06 55.8 123 35.0
HPP92_020033 Vanilla planifolia HOM05D007839 ORTHO05D009924 6.2e-06 55.8 134 35.1
Ciclev10017838m.g Citrus clementina HOM05D007839 ORTHO05D009924 8.1e-06 55.5 105 34.3


User provided reference genes

Program Settings