Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11489 Brassica carinata HOM05D005874 ORTHO05D007206 3.0e-69 265.0 130 100.0
C04p14840 Brassica napus HOM05D005874 ORTHO05D007206 4.0e-69 264.6 130 99.2
BolC4t23058H Brassica oleracea HOM05D008292 ORTHO05D003352 4.4e-68 261.2 129 97.7
C02p36570 Brassica napus HOM05D005874 ORTHO05D007206 5.8e-44 181.0 102 87.3
A05p42610 Brassica napus HOM05D005874 ORTHO05D007206 1.1e-31 140.2 83 81.9
BcaC05g29976 Brassica carinata HOM05D005874 ORTHO05D007206 1.9e-31 139.4 83 80.7
C05p62300 Brassica napus HOM05D005874 ORTHO05D007206 2.5e-31 139.0 83 81.9
BolC5t34886H Brassica oleracea HOM05D005874 ORTHO05D007206 2.5e-31 139.0 83 81.9
BraA05t22992Z Brassica rapa HOM05D005874 ORTHO05D007206 1.2e-30 136.7 83 80.7
Thhalv10020879m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 7.5e-28 127.5 83 71.1
Aa31LG5G15480 Aethionema arabicum HOM05D005874 ORTHO05D007206 2.2e-27 125.9 83 71.1
Carub.0003s0419 Capsella rubella HOM05D005874 ORTHO05D007206 2.2e-27 125.9 78 74.4
Aa31LG11G9040 Aethionema arabicum HOM05D005874 ORTHO05D007206 6.4e-27 124.4 83 68.7
Sp2g20520 Schrenkiella parvula HOM05D005874 ORTHO05D007206 1.9e-26 122.9 78 74.4
THA.LOC104818669 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 7.1e-26 120.9 83 67.5
Thhalv10004370m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 1.2e-25 120.2 78 71.8
BcaB04g19660 Brassica carinata HOM05D005874 ORTHO05D007206 2.1e-25 119.4 78 73.1
A09p05220 Brassica napus HOM05D005874 ORTHO05D007206 7.8e-25 117.5 78 71.8
BraA09t36161Z Brassica rapa HOM05D005874 ORTHO05D007206 7.8e-25 117.5 78 71.8
BcaB04g19663 Brassica carinata HOM05D005874 ORTHO05D007206 5.1e-24 114.8 78 70.5
BcaC04g23685 Brassica carinata HOM05D005874 ORTHO05D007206 5.1e-24 114.8 78 70.5
C09p05680 Brassica napus HOM05D005874 ORTHO05D007206 5.1e-24 114.8 78 70.5
BolC9t53497H Brassica oleracea HOM05D005874 ORTHO05D007206 5.1e-24 114.8 78 70.5
Sed0024795 Sechium edule HOM05D005083 ORTHO05D006310 6.6e-24 114.4 83 61.4
THA.LOC104802814 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 6.6e-24 114.4 83 62.7
QL03p002925 Quercus lobata HOM05D005874 ORTHO05D007206 8.6e-24 114.0 78 67.9
vmacro05048 Vaccinium macrocarpon HOM05D005874 ORTHO05D007206 8.6e-24 114.0 78 65.4
GSVIVG01022009001 Vitis vinifera HOM05D005874 ORTHO05D007206 8.6e-24 114.0 78 67.9
arahy.Tifrunner.gnm1.ann1.MWM6LR Arachis hypogaea HOM05D005874 ORTHO05D007206 1.9e-23 112.8 83 62.7
arahy.Tifrunner.gnm1.ann1.QVQE66 Arachis hypogaea HOM05D005874 ORTHO05D007206 1.9e-23 112.8 83 62.7
CANSAT54G0668 Cannabis sativa HOM05D005874 ORTHO05D007206 3.3e-23 112.1 78 65.4
TAR362G0076 Trochodendron aralioides HOM05D005874 ORTHO05D007206 3.3e-23 112.1 78 67.9
BcaC04g23688 Brassica carinata HOM05D005874 ORTHO05D007206 4.3e-23 111.7 74 73.0
CiPaw.07G012300 Carya illinoinensis HOM05D005874 ORTHO05D007206 5.6e-23 111.3 78 69.2
MELO3C014079.2 Cucumis melo HOM05D005874 ORTHO05D007206 5.6e-23 111.3 83 61.4
CsaV3_3G003940 Cucumis sativus L. HOM05D005874 ORTHO05D007206 1.2e-22 110.2 83 60.2
Duzib128G0205 Durio zibethinus HOM05D005874 ORTHO05D007206 1.6e-22 109.8 78 64.1
ATR0487G009 Amborella trichopoda HOM05D005874 ORTHO05D007206 2.1e-22 109.4 78 64.1
Prupe.6G333100 Prunus persica HOM05D005874 ORTHO05D007206 2.1e-22 109.4 76 65.8
Eucgr.B02032 Eucalyptus grandis HOM05D005874 ORTHO05D007206 3.6e-22 108.6 78 62.8
Gohir.D13G178100 Gossypium hirsutum HOM05D005874 ORTHO05D007206 3.6e-22 108.6 78 60.3
Gorai.013G203400 Gossypium raimondii HOM05D005874 ORTHO05D007206 3.6e-22 108.6 78 60.3
Actinidia30901 Actinidia chinensis HOM05D005874 ORTHO05D007206 4.7e-22 108.2 76 68.4
Actinidia05739 Actinidia chinensis HOM05D005874 ORTHO05D007206 6.2e-22 107.8 76 69.7
CARHR185900 Cardamine hirsuta HOM05D005874 ORTHO05D007206 8.1e-22 107.5 83 60.2
Potri.005G041000 Populus trichocarpa HOM05D005874 ORTHO05D007206 8.1e-22 107.5 78 62.8
PGR031G1977 Punica granatum HOM05D005874 ORTHO05D007206 8.1e-22 107.5 83 57.8
Dinv40230 Davidia involucrata HOM05D005874 ORTHO05D007206 1.1e-21 107.1 78 61.5
Glyma.19G239400 Glycine max HOM05D005874 ORTHO05D007206 1.4e-21 106.7 83 60.2
Atru.chr2.537 Acer truncatum HOM05D005874 ORTHO05D007206 1.8e-21 106.3 78 64.1
Sabra05G0040000 Salix brachista HOM05D005874 ORTHO05D007206 1.8e-21 106.3 78 64.1
Ciclev10001418m.g Citrus clementina HOM05D005874 ORTHO05D007206 2.4e-21 105.9 78 64.1
Manes.08G125000 Manihot esculenta HOM05D005874 ORTHO05D007206 2.4e-21 105.9 78 60.3
Glyma.03G242000 Glycine max HOM05D005874 ORTHO05D007206 3.1e-21 105.5 83 59.0
Phvul.006G096000 Phaseolus vulgaris HOM05D005874 ORTHO05D007206 4.0e-21 105.1 78 61.5
Cpa.g.sc84.114 Carica papaya HOM05D005874 ORTHO05D007206 5.2e-21 104.8 78 60.3
Cc02_g32810 Coffea canephora HOM05D005874 ORTHO05D007206 5.2e-21 104.8 78 61.5
Hma1.2p1_0071F.1_g037960 Hydrangea macrophylla HOM05D005874 ORTHO05D007206 5.2e-21 104.8 78 60.3
CSS0017417 Camellia sinensis var. sinensis HOM05D005874 ORTHO05D007206 1.2e-20 103.6 78 61.5
TPR.G21789 Trifolium pratense HOM05D005874 ORTHO05D007206 1.5e-20 103.2 83 57.8
Aqoxy5G00596 Aquilegia oxysepala HOM05D005874 ORTHO05D007206 2.0e-20 102.8 78 62.8
Gohir.A13G172200 Gossypium hirsutum HOM05D005874 ORTHO05D007206 2.0e-20 102.8 78 57.7
Lj1g0003731 Lotus japonicus HOM05D005874 ORTHO05D007206 2.0e-20 102.8 78 62.8
FvH4_6g04920 Fragaria vesca HOM05D005874 ORTHO05D007206 2.6e-20 102.4 76 63.2
FAN14G1317 Fragaria x ananassa HOM05D005874 ORTHO05D007206 2.6e-20 102.4 76 63.2
Lalb_Chr15g0077001 Lupinus albus HOM05D005874 ORTHO05D007206 2.6e-20 102.4 78 60.3
MD12G1227400 Malus domestica HOM05D005874 ORTHO05D007206 2.6e-20 102.4 76 60.5
Dinv22927 Davidia involucrata HOM05D005874 ORTHO05D007206 3.4e-20 102.1 76 60.5
Psat3g009240 Pisum sativum HOM05D005874 ORTHO05D007206 3.4e-20 102.1 81 60.5
TWI36G0483 Tripterygium wilfordii HOM05D005874 ORTHO05D007206 4.4e-20 101.7 81 56.8
FAN05G2497 Fragaria x ananassa HOM05D005874 ORTHO05D007206 5.8e-20 101.3 76 61.8
MD04G1213200 Malus domestica HOM05D005874 ORTHO05D007206 1.3e-19 100.1 76 57.9
PSO832G1738 Papaver somniferum HOM05D005874 ORTHO05D007206 1.3e-19 100.1 83 55.4
Haze_04267 Corylus avellana HOM05D005874 ORTHO05D007206 1.7e-19 99.8 78 59.0
FAN05G4189 Fragaria x ananassa HOM05D005874 ORTHO05D007206 1.7e-19 99.8 76 60.5
RcHm_v2.0_Chr3g0453421 Rosa chinensis HOM05D005874 ORTHO05D007206 2.2e-19 99.4 76 60.5
VMungo0540G0326 Vigna mungo HOM05D005874 ORTHO05D007206 2.2e-19 99.4 78 59.0
CAN.G56.14 Capsicum annuum HOM05D005874 ORTHO05D007206 2.9e-19 99.0 76 60.5
Medtr7g114080 Medicago truncatula HOM05D005874 ORTHO05D007206 2.9e-19 99.0 83 56.6
Migut.L01513 Erythranthe guttata HOM05D005874 ORTHO05D007206 3.8e-19 98.6 83 54.2
FAN09G3845 Fragaria x ananassa HOM05D005874 ORTHO05D007206 6.4e-19 97.8 76 60.5
PSO210G2121 Papaver somniferum HOM05D005874 ORTHO05D007206 6.4e-19 97.8 83 55.4
Sopen08g010120 Solanum pennellii HOM05D005874 ORTHO05D007206 6.4e-19 97.8 78 56.4
Hund07023 Selenicereus undatus HOM05D005874 ORTHO05D007206 1.1e-18 97.1 78 56.4
Solyc08g029200.3 Solanum lycopersicum HOM05D005874 ORTHO05D007206 1.4e-18 96.7 78 55.1
HPP92_003153 Vanilla planifolia HOM05D005874 ORTHO05D007206 1.9e-18 96.3 78 52.6
Rhsim07G0178000 Rhododendron simsii HOM05D005874 ORTHO05D007206 2.4e-18 95.9 90 51.1
Peaxi162Scf00071g00714 Petunia axillaris HOM05D005874 ORTHO05D007206 3.2e-18 95.5 78 56.4
SGA_v2.0_scaffold21G09411 Striga asiatica HOM05D005874 ORTHO05D007206 5.4e-18 94.7 83 53.0
CDE12G0821 Ceratophyllum demersum HOM05D005874 ORTHO05D007206 9.2e-18 94.0 78 57.7
Sc06g0003460 Simmondsia chinensis HOM05D005874 ORTHO05D007206 9.2e-18 94.0 78 53.8
COL.COLO4_13564 Corchorus olitorius HOM05D005874 ORTHO05D007206 1.2e-17 93.6 57 68.4
Os03g0363900 Oryza sativa ssp. japonica HOM05D005874 ORTHO05D007206 1.6e-17 93.2 76 59.2
Thecc.05G296800 Theobroma cacao HOM05D005874 ORTHO05D007206 1.6e-17 93.2 57 68.4
Zm00001eb394310 Zea mays HOM05D005874 ORTHO05D007206 1.6e-17 93.2 76 59.2
MSTRG.10544 Avicennia marina HOM05D005874 ORTHO05D007206 2.7e-17 92.4 78 55.1
ECA232G3849 Erigeron canadensis HOM05D005874 ORTHO05D007206 2.7e-17 92.4 78 51.3
HanXRQChr09g0254601 Helianthus annuus HOM05D005874 ORTHO05D007206 1.7e-16 89.7 78 51.3
Oeu052135.1 Olea europaea HOM05D005874 ORTHO05D007206 2.3e-16 89.4 78 55.1
Ah.04g159940 Amaranthus hybridus HOM05D005874 ORTHO05D007206 8.7e-16 87.4 78 52.6
Lj9A680G39 Lonicera japonica HOM05D005874 ORTHO05D007206 8.7e-16 87.4 65 60.0
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 1.1e-15 87.0 57 63.2
Lj9A677G37 Lonicera japonica HOM05D005874 ORTHO05D007206 1.1e-15 87.0 65 58.5
unitig_578.g16415 Utricularia gibba HOM05D005874 ORTHO05D007206 1.1e-15 87.0 81 50.6
Lsat_1_v5_gn_4_139320 Lactuca sativa HOM05D005874 ORTHO05D007206 4.3e-15 85.1 78 48.7
QL03p003516 Quercus lobata HOM05D005874 ORTHO05D007206 1.4e-13 80.1 155 34.2
Mapoly0004s0142 Marchantia polymorpha HOM05D005874 ORTHO05D007206 9.9e-12 73.9 78 44.9
AagrBONN_evm.TU.Sc2ySwM_362.837 Anthoceros agrestis HOM05D005874 ORTHO05D007206 2.2e-11 72.8 78 42.3
Cfa006515 Carpinus fangiana HOM05D005874 ORTHO05D007206 5.4e-10 68.2 45 60.0
CBR_g48996 Chara braunii HOM05D000019 ORTHO05D001702 3.5e-09 65.5 76 40.8
Atru.chr2.564 Acer truncatum HOM05D005874 ORTHO05D007206 1.3e-08 63.5 47 61.7
BcaC03g15888 Brassica carinata HOM05D008292 ORTHO05D003352 1.1e-07 60.5 34 88.2
BcaC02g11488 Brassica carinata HOM05D008292 ORTHO05D003352 4.3e-07 58.5 34 85.3
C04p14850 Brassica napus HOM05D008292 ORTHO05D003352 4.3e-07 58.5 34 85.3
Nitab4.5_0000176g0130 Nicotiana tabacum HOM05D005874 ORTHO05D007206 5.6e-07 58.2 47 55.3
SMO356G0262 Selaginella moellendorffii HOM05D005874 ORTHO05D007206 1.6e-06 56.6 78 37.2
Nitab4.5_0005924g0010 Nicotiana tabacum HOM05D005874 ORTHO05D007206 2.1e-06 56.2 47 53.2
EL10Ac4g09284 Beta vulgaris HOM05D005874 ORTHO05D007206 2.8e-06 55.8 73 43.8
C05p31020 Brassica napus HOM05D008292 ORTHO05D003352 2.8e-06 55.8 34 82.4
CARHR079280 Cardamine hirsuta HOM05D005874 ORTHO05D007206 2.8e-06 55.8 35 68.6
BolC5t31825H Brassica oleracea HOM05D008292 ORTHO05D003352 3.6e-06 55.5 34 79.4
BcaB04g16904 Brassica carinata HOM05D008292 ORTHO05D003352 4.8e-06 55.1 34 79.4


User provided reference genes

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