Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11487 Brassica carinata HOM05D004767 ORTHO05D005674 1.8e-180 636.0 349 100.0
C04p14860 Brassica napus HOM05D004767 ORTHO05D005674 8.7e-180 633.6 349 99.7
BolC4t23059H Brassica oleracea HOM05D004767 ORTHO05D005674 3.3e-179 631.7 349 99.4
A05p11370 Brassica napus HOM05D004767 ORTHO05D005674 3.1e-177 625.2 349 98.0
BraA05t20086Z Brassica rapa HOM05D004767 ORTHO05D005674 3.1e-177 625.2 349 98.0
BcaB02g09562 Brassica carinata HOM05D004767 ORTHO05D005674 4.2e-174 614.8 350 96.3
Sp4g16550 Schrenkiella parvula HOM05D004767 ORTHO05D005674 1.5e-168 596.3 352 93.8
BcaB06g28745 Brassica carinata HOM05D004767 ORTHO05D005674 2.6e-168 595.5 350 93.4
BraA04t18130Z Brassica rapa HOM05D004767 ORTHO05D005674 3.2e-166 588.6 306 95.8
C04p63650 Brassica napus HOM05D004767 ORTHO05D005674 5.5e-166 587.8 306 95.4
Carub.0004s1593 Capsella rubella HOM05D004767 ORTHO05D005674 7.4e-163 577.4 311 91.6
AT2G34260 Arabidopsis thaliana HOM05D004767 ORTHO05D005674 3.7e-162 575.1 311 92.0
CARHR128360 Cardamine hirsuta HOM05D004767 ORTHO05D005674 7.7e-160 567.4 311 90.0
Aa31LG9G14020 Aethionema arabicum HOM05D004767 ORTHO05D005674 1.5e-155 553.1 308 87.7
THA.LOC104816808 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 7.2e-150 534.3 355 75.5
Thhalv10016919m.g Eutrema salsugineum HOM05D004767 ORTHO05D005674 6.1e-149 531.2 306 87.6
THA.LOC104820618 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 1.8e-148 529.6 355 74.4
AL4G30210 Arabidopsis lyrata HOM05D004767 ORTHO05D005674 3.6e-141 505.4 311 81.4
Cpa.g.sc365.7 Carica papaya HOM05D004767 ORTHO05D005674 1.7e-127 459.9 307 72.6
Lalb_Chr05g0214971 Lupinus albus HOM05D004767 ORTHO05D005674 8.5e-127 457.6 307 72.3
Glyma.10G129800 Glycine max HOM05D004767 ORTHO05D005674 1.9e-126 456.4 312 70.8
MSTRG.16702 Avicennia marina HOM05D004767 ORTHO05D005674 3.2e-126 455.7 311 71.7
PGSC0003DMG400003462 Solanum tuberosum HOM05D004767 ORTHO05D005674 4.2e-126 455.3 311 69.8
SGA_v2.0_scaffold108G30887 Striga asiatica HOM05D004767 ORTHO05D005674 4.2e-126 455.3 304 72.4
Oeu010411.1 Olea europaea HOM05D004767 ORTHO05D005674 7.2e-126 454.5 308 71.8
Lalb_Chr09g0324851 Lupinus albus HOM05D004767 ORTHO05D005674 1.2e-125 453.8 299 72.2
Gohir.D04G022900 Gossypium hirsutum HOM05D004767 ORTHO05D005674 6.1e-125 451.4 306 71.6
Gorai.012G034000 Gossypium raimondii HOM05D004767 ORTHO05D005674 6.1e-125 451.4 306 71.6
Sopen02g012180 Solanum pennellii HOM05D004767 ORTHO05D005674 1.0e-124 450.7 311 68.8
Eucgr.H00074 Eucalyptus grandis HOM05D004767 ORTHO05D005674 1.4e-124 450.3 350 65.4
Solyc02g038750.3 Solanum lycopersicum HOM05D004767 ORTHO05D005674 1.4e-124 450.3 311 68.8
Thecc.01G130700 Theobroma cacao HOM05D004767 ORTHO05D005674 1.4e-124 450.3 306 70.6
Gohir.A05G385700 Gossypium hirsutum HOM05D004767 ORTHO05D005674 3.0e-124 449.1 306 71.2
PGR102G1152 Punica granatum HOM05D004767 ORTHO05D005674 3.0e-124 449.1 310 71.9
CANSAT54G2063 Cannabis sativa HOM05D004767 ORTHO05D005674 4.0e-124 448.7 312 68.9
Peaxi162Scf00431g00415 Petunia axillaris HOM05D004767 ORTHO05D005674 4.0e-124 448.7 309 69.6
Potri.004G095000 Populus trichocarpa HOM05D004767 ORTHO05D005674 5.2e-124 448.4 299 70.6
TPR.G18695 Trifolium pratense HOM05D004767 ORTHO05D005674 5.2e-124 448.4 307 70.4
arahy.Tifrunner.gnm1.ann1.AK1NBZ Arachis hypogaea HOM05D004767 ORTHO05D005674 6.8e-124 448.0 311 71.1
Potri.017G120100 Populus trichocarpa HOM05D004767 ORTHO05D005674 6.8e-124 448.0 303 70.0
Psat1g185000 Pisum sativum HOM05D004767 ORTHO05D005674 1.5e-123 446.8 315 69.5
Glyma.12G025800 Glycine max HOM05D004767 ORTHO05D005674 2.0e-123 446.4 311 69.8
QL10p048860 Quercus lobata HOM05D004767 ORTHO05D005674 2.0e-123 446.4 299 71.6
TAR625G0043 Trochodendron aralioides HOM05D004767 ORTHO05D005674 2.0e-123 446.4 298 71.5
Medtr4g077783 Medicago truncatula HOM05D004767 ORTHO05D005674 2.6e-123 446.0 315 68.6
Medtr4g111810 Medicago truncatula HOM05D004767 ORTHO05D005674 4.4e-123 445.3 302 71.2
Nn6g31627 Nelumbo nucifera HOM05D004767 ORTHO05D005674 4.4e-123 445.3 299 71.6
TPR.G26773 Trifolium pratense HOM05D004767 ORTHO05D005674 4.4e-123 445.3 302 71.5
MD12G1063000 Malus domestica HOM05D004767 ORTHO05D005674 1.7e-122 443.4 311 69.8
Ca_02533_v3 Cicer arietinum L. HOM05D004767 ORTHO05D005674 2.2e-122 443.0 300 70.3
Prupe.7G070600 Prunus persica HOM05D004767 ORTHO05D005674 2.8e-122 442.6 299 71.6
VMungo1127G0990 Vigna mungo HOM05D004767 ORTHO05D005674 2.8e-122 442.6 311 67.8
Hund21306 Selenicereus undatus HOM05D004767 ORTHO05D005674 3.7e-122 442.2 303 71.6
TAR381G0314 Trochodendron aralioides HOM05D004767 ORTHO05D005674 3.7e-122 442.2 298 71.8
Duzib264G0649 Durio zibethinus HOM05D004767 ORTHO05D005674 4.9e-122 441.8 305 69.5
CiPaw.03G094400 Carya illinoinensis HOM05D004767 ORTHO05D005674 8.3e-122 441.0 299 71.6
MD14G1063600 Malus domestica HOM05D004767 ORTHO05D005674 1.4e-121 440.3 313 69.6
FAN02G2069 Fragaria x ananassa HOM05D004767 ORTHO05D005674 1.8e-121 439.9 303 69.6
Phvul.011G028400 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 1.8e-121 439.9 297 70.0
FAN09G1063 Fragaria x ananassa HOM05D004767 ORTHO05D005674 2.4e-121 439.5 304 70.1
Nitab4.5_0000235g0120 Nicotiana tabacum HOM05D004767 ORTHO05D005674 2.4e-121 439.5 311 68.8
arahy.Tifrunner.gnm1.ann1.BE8FK9 Arachis hypogaea HOM05D004767 ORTHO05D005674 4.1e-121 438.7 358 62.6
FAN14G1715 Fragaria x ananassa HOM05D004767 ORTHO05D005674 7.0e-121 438.0 299 70.2
RcHm_v2.0_Chr3g0480691 Rosa chinensis HOM05D004767 ORTHO05D005674 9.2e-121 437.6 304 70.1
unitig_61.g26025 Utricularia gibba HOM05D004767 ORTHO05D005674 9.2e-121 437.6 306 68.3
Cc07_g12190 Coffea canephora HOM05D004767 ORTHO05D005674 1.2e-120 437.2 289 74.0
FvH4_6g22900 Fragaria vesca HOM05D004767 ORTHO05D005674 1.2e-120 437.2 299 70.2
Lj1g0021179 Lotus japonicus HOM05D004767 ORTHO05D005674 1.2e-120 437.2 302 69.2
Manes.02G116500 Manihot esculenta HOM05D004767 ORTHO05D005674 1.2e-120 437.2 300 70.3
Nitab4.5_0006401g0010 Nicotiana tabacum HOM05D004767 ORTHO05D005674 2.0e-120 436.4 311 68.8
GSVIVG01017458001 Vitis vinifera HOM05D004767 ORTHO05D005674 2.0e-120 436.4 300 71.7
GSVIVG01020926001 Vitis vinifera HOM05D004767 ORTHO05D005674 8.6e-119 431.0 300 70.7
AUR62012542 Chenopodium quinoa HOM05D004767 ORTHO05D005674 2.5e-118 429.5 289 73.4
EL10Ac8g19950 Beta vulgaris HOM05D004767 ORTHO05D005674 4.3e-118 428.7 299 69.9
COL.COLO4_35713 Corchorus olitorius HOM05D004767 ORTHO05D005674 4.3e-118 428.7 299 69.2
EL10Ac3g07307 Beta vulgaris HOM05D004767 ORTHO05D005674 5.6e-118 428.3 299 69.2
DCAR_019301 Daucus carota HOM05D004767 ORTHO05D005674 5.6e-118 428.3 318 67.9
Atru.chr5.1742 Acer truncatum HOM05D004767 ORTHO05D005674 1.2e-117 427.2 306 67.6
HanXRQChr15g0489741 Helianthus annuus HOM05D004767 ORTHO05D005674 1.6e-117 426.8 305 66.9
TWI73G0530 Tripterygium wilfordii HOM05D004767 ORTHO05D005674 2.1e-117 426.4 308 67.9
Sed0020265 Sechium edule HOM05D004767 ORTHO05D005674 8.0e-117 424.5 301 69.1
Migut.B00408 Erythranthe guttata HOM05D004767 ORTHO05D005674 2.3e-116 422.9 298 66.8
Sed0012135 Sechium edule HOM05D004767 ORTHO05D005674 5.2e-116 421.8 300 69.3
Aqoxy6G02991 Aquilegia oxysepala HOM05D004767 ORTHO05D005674 8.9e-116 421.0 310 66.8
Lj4C240T4 Lonicera japonica HOM05D004767 ORTHO05D005674 1.5e-115 420.2 306 67.0
PSO017G2362 Papaver somniferum HOM05D004767 ORTHO05D005674 1.5e-115 420.2 298 67.8
Sc03g0004110 Simmondsia chinensis HOM05D004767 ORTHO05D005674 2.6e-115 419.5 299 68.2
CDE02G0197 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 7.5e-115 417.9 296 68.2
Sabra17G0099100 Salix brachista HOM05D004767 ORTHO05D005674 9.8e-115 417.5 306 67.3
ECA233G4977 Erigeron canadensis HOM05D004767 ORTHO05D005674 1.3e-114 417.2 301 66.8
A04p26260 Brassica napus HOM05D004767 ORTHO05D005674 2.9e-114 416.0 212 96.2
ClCG10G013460 Citrullus lanatus HOM05D004767 ORTHO05D005674 1.8e-113 413.3 309 65.7
CDE08G0085 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 4.1e-113 412.1 297 68.0
HPP92_003941 Vanilla planifolia HOM05D004767 ORTHO05D005674 3.9e-111 405.6 298 65.8
Psat1g210160 Pisum sativum HOM05D004767 ORTHO05D005674 4.7e-109 398.7 272 71.7
COL.COLO4_38041 Corchorus olitorius HOM05D004767 ORTHO05D005674 1.8e-108 396.7 265 70.9
SalBow6G2358 Salvia bowleyana HOM05D004767 ORTHO05D005674 1.3e-106 390.6 323 63.8
SalBow6G5765 Salvia bowleyana HOM05D004767 ORTHO05D005674 3.7e-106 389.0 323 63.5
Lsat_1_v5_gn_8_114040 Lactuca sativa HOM05D004767 ORTHO05D005674 4.9e-106 388.7 308 62.0
TAR625G0966 Trochodendron aralioides HOM05D004767 ORTHO05D005674 1.9e-105 386.7 271 69.0
Os07g0660700 Oryza sativa ssp. japonica HOM05D004767 ORTHO05D005674 9.2e-105 384.4 287 63.4
MELO3C026614.2 Cucumis melo HOM05D004767 ORTHO05D005674 1.6e-104 383.6 308 62.0
Rhsim08G0026000 Rhododendron simsii HOM05D004767 ORTHO05D005674 1.3e-103 380.6 340 58.8
Zm00001eb349300 Zea mays HOM05D004767 ORTHO05D005674 1.3e-103 380.6 301 60.1
PSO170G0853 Papaver somniferum HOM05D004767 ORTHO05D005674 2.3e-103 379.8 298 62.4
SalBow2G0232 Salvia bowleyana HOM05D004767 ORTHO05D005674 3.9e-103 379.0 299 64.5
Actinidia28754 Actinidia chinensis HOM05D004767 ORTHO05D005674 2.5e-102 376.3 258 69.8
Hma1.2p1_0085F.1_g044390 Hydrangea macrophylla HOM05D004767 ORTHO05D005674 3.3e-102 375.9 333 58.9
RcHm_v2.0_Chr4g0410631 Rosa chinensis HOM05D004767 ORTHO05D005674 6.2e-101 371.7 305 62.0
vmacro18476 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 1.4e-97 360.5 310 61.3
Lj3A907T66 Lonicera japonica HOM05D004767 ORTHO05D005674 1.9e-97 360.1 350 53.7
Haze_03669 Corylus avellana HOM05D004767 ORTHO05D005674 1.6e-93 347.1 306 60.5
Mapoly0040s0029 Marchantia polymorpha HOM05D004767 ORTHO05D005674 2.8e-93 346.3 301 55.1
Dinv40217 Davidia involucrata HOM05D004767 ORTHO05D005674 3.8e-90 335.9 230 71.3
AagrBONN_evm.TU.Sc2ySwM_344.1647 Anthoceros agrestis HOM05D004767 ORTHO05D005674 4.9e-90 335.5 296 54.1
Glyma.11G099900 Glycine max HOM05D004767 ORTHO05D005674 7.1e-89 331.6 299 56.5
CsaV3_3G043180 Cucumis sativus L. HOM05D004767 ORTHO05D005674 3.9e-87 325.9 303 55.1
AUR62014654 Chenopodium quinoa HOM05D004767 ORTHO05D005674 1.9e-86 323.6 298 57.4
Phvul.005G015600 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 1.2e-85 320.9 302 55.6
Phvul.005G015700 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 1.6e-85 320.5 303 55.8
CSS0049016 Camellia sinensis var. sinensis HOM05D004767 ORTHO05D005674 1.2e-83 314.3 290 56.9
SMO364G0336 Selaginella moellendorffii HOM05D004767 ORTHO05D005674 1.3e-82 310.8 312 51.3
AUR62044118 Chenopodium quinoa HOM05D004767 ORTHO05D005674 1.4e-81 307.4 289 57.4
Cfa006688 Carpinus fangiana HOM05D004767 ORTHO05D005674 2.4e-81 306.6 266 61.3
Ah.09g236950 Amaranthus hybridus HOM05D004767 ORTHO05D005674 1.2e-80 304.3 305 52.8
CBR_g37537 Chara braunii HOM05D004767 ORTHO05D005674 5.6e-70 268.9 289 46.7
MCO07G146 Micromonas commoda HOM05D004767 ORTHO05D005674 2.1e-61 240.4 296 42.9
Glyma.20G080900 Glycine max HOM05D004767 ORTHO05D005674 6.3e-53 212.2 142 71.8
Medtr1g076780 Medicago truncatula HOM05D004767 ORTHO05D005674 8.2e-53 211.8 156 66.7
SHI13610 Sapria himalayana HOM05D004767 ORTHO05D005674 2.6e-51 206.8 235 45.5
BolC4t27833H Brassica oleracea HOM05D004767 ORTHO05D005674 3.9e-47 193.0 248 51.6
SEGI_28078 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 9.7e-46 188.3 146 63.0
ATR0680G041 Amborella trichopoda HOM05D004767 ORTHO05D005674 2.4e-44 183.7 155 57.4
Cre02.g113250 Chlamydomonas reinhardtii HOM05D004767 ORTHO05D005674 7.7e-43 178.7 245 41.2
PRCOL_00000722 Prasinoderma coloniale HOM05D004767 ORTHO05D005674 9.4e-41 171.8 292 36.0
Psat6g227720 Pisum sativum HOM05D004767 ORTHO05D005674 5.1e-39 166.0 145 57.9
Oeu036465.1 Olea europaea HOM05D004767 ORTHO05D005674 7.4e-38 162.2 240 43.8
Psat6g227760 Pisum sativum HOM05D004767 ORTHO05D005674 3.1e-36 156.8 140 57.9
Pp3c5_17020 Physcomitrium patens HOM05D004767 ORTHO05D005674 2.0e-35 154.1 298 34.2
Phvul.011G028501 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 4.2e-33 146.4 119 61.3
QL07p001807 Quercus lobata HOM05D004767 ORTHO05D005674 2.3e-31 140.6 153 47.1
ATR0231G001 Amborella trichopoda HOM05D004767 ORTHO05D005674 8.8e-23 112.1 92 63.0
Sabra17G0099200 Salix brachista HOM05D004767 ORTHO05D005674 1.3e-21 108.2 78 65.4
SEGI_20710 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 5.9e-19 99.4 96 54.2
SEGI_27353 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 5.7e-14 82.8 62 62.9
Phvul.011G028300 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 5.4e-12 76.3 46 71.7
Lsat_1_v5_gn_6_103760 Lactuca sativa HOM05D004767 ORTHO05D005674 2.0e-11 74.3 66 56.1
vmacro07517 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 5.9e-11 72.8 52 67.3
Cc11_g01130 Coffea canephora HOM05D004767 ORTHO05D005674 1.0e-10 72.0 42 76.2
GSVIVG01020113001 Vitis vinifera HOM05D004767 ORTHO05D005674 1.1e-09 68.6 53 66.0
Haze_27084 Corylus avellana HOM05D002303 ORTHO05D007639 7.2e-09 65.9 287 23.7
Actinidia09820 Actinidia chinensis HOM05D004767 ORTHO05D005674 9.5e-09 65.5 56 55.4
Cc11_g01140 Coffea canephora HOM05D004767 ORTHO05D005674 6.8e-07 59.3 43 58.1
Gohir.D06G210133 Gossypium hirsutum HOM05D000836 ORTHO05D000709 1.2e-06 58.5 251 23.5
Gorai.010G256300 Gossypium raimondii HOM05D000836 ORTHO05D000709 1.2e-06 58.5 251 23.5
Eucgr.L00018 Eucalyptus grandis HOM05D005323 ORTHO05D006820 9.8e-06 55.5 160 23.8


User provided reference genes

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