Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11449 Brassica carinata HOM05D006274 ORTHO05D007782 4.2e-96 354.8 188 100.0
BolC4t23114H Brassica oleracea HOM05D006274 ORTHO05D007782 8.8e-94 347.1 186 98.4
A05p11860 Brassica napus HOM05D006274 ORTHO05D007782 5.7e-93 344.4 186 97.3
C04p15430 Brassica napus HOM05D006274 ORTHO05D007782 1.1e-91 340.1 186 97.3
BraA05t20127Z Brassica rapa HOM05D006274 ORTHO05D007782 2.0e-90 335.9 186 96.8
BcaB02g10587 Brassica carinata HOM05D006274 ORTHO05D007782 8.8e-86 320.5 186 93.5
Thhalv10017289m.g Eutrema salsugineum HOM05D006274 ORTHO05D007782 8.2e-84 313.9 187 89.3
Sp4g16090 Schrenkiella parvula HOM05D006274 ORTHO05D007782 2.2e-81 305.8 187 88.2
Carub.0004s1538 Capsella rubella HOM05D006274 ORTHO05D007782 2.0e-74 282.7 187 82.4
CARHR127760 Cardamine hirsuta HOM05D006274 ORTHO05D007782 1.3e-73 280.0 186 81.2
AL4G29430 Arabidopsis lyrata HOM05D006274 ORTHO05D007782 3.8e-73 278.5 184 81.5
Aa31LG9G13640 Aethionema arabicum HOM05D006274 ORTHO05D007782 8.5e-73 277.3 188 80.9
THA.LOC104814210 Tarenaya hassleriana HOM05D006274 ORTHO05D007782 1.9e-72 276.2 175 83.4
AT2G33740 Arabidopsis thaliana HOM05D006274 ORTHO05D007782 2.5e-72 275.8 186 80.6
TWI56G1401 Tripterygium wilfordii HOM05D006274 ORTHO05D007782 3.7e-68 261.9 182 76.4
Thecc.08G068200 Theobroma cacao HOM05D006274 ORTHO05D007782 6.3e-68 261.2 183 76.0
Cfa013698 Carpinus fangiana HOM05D006274 ORTHO05D007782 2.5e-64 249.2 194 71.6
Haze_22342 Corylus avellana HOM05D006274 ORTHO05D007782 2.5e-64 249.2 180 73.9
PGR031G0701 Punica granatum HOM05D006274 ORTHO05D007782 4.2e-64 248.4 190 70.5
Duzib116G0317 Durio zibethinus HOM05D006274 ORTHO05D007782 7.2e-64 247.7 183 71.6
Manes.18G061000 Manihot esculenta HOM05D006274 ORTHO05D007782 1.6e-63 246.5 176 73.9
Potri.002G103700 Populus trichocarpa HOM05D006274 ORTHO05D007782 4.7e-63 245.0 187 70.1
THA.LOC104820685 Tarenaya hassleriana HOM05D006274 ORTHO05D007782 4.7e-63 245.0 179 73.7
Cc10_g15630 Coffea canephora HOM05D006274 ORTHO05D007782 5.2e-62 241.5 186 68.3
MSTRG.19530 Avicennia marina HOM05D006274 ORTHO05D007782 6.8e-62 241.1 190 68.9
CiPaw.07G167900 Carya illinoinensis HOM05D006274 ORTHO05D007782 6.8e-62 241.1 187 71.1
Gohir.D06G032400 Gossypium hirsutum HOM05D006274 ORTHO05D007782 8.8e-62 240.7 192 69.8
TAR381G0542 Trochodendron aralioides HOM05D006274 ORTHO05D007782 8.8e-62 240.7 180 72.2
Nn5g29933 Nelumbo nucifera HOM05D006274 ORTHO05D007782 2.0e-61 239.6 182 70.3
Prupe.1G528000 Prunus persica HOM05D006274 ORTHO05D007782 3.4e-61 238.8 192 68.2
Gorai.010G035700 Gossypium raimondii HOM05D006274 ORTHO05D007782 4.4e-61 238.4 192 69.3
SalBow6G3082 Salvia bowleyana HOM05D006274 ORTHO05D007782 7.5e-61 237.7 190 66.8
QL09p017221 Quercus lobata HOM05D006274 ORTHO05D007782 1.7e-60 236.5 190 70.5
MD08G1193500 Malus domestica HOM05D006274 ORTHO05D007782 2.2e-60 236.1 179 68.2
CSS0045542 Camellia sinensis var. sinensis HOM05D006274 ORTHO05D007782 8.3e-60 234.2 185 70.8
PGSC0003DMG400012912 Solanum tuberosum HOM05D006274 ORTHO05D007782 1.8e-59 233.0 189 68.3
Hund27007 Selenicereus undatus HOM05D006274 ORTHO05D007782 3.1e-59 232.3 180 68.9
Sopen00g007030 Solanum pennellii HOM05D006274 ORTHO05D007782 3.1e-59 232.3 180 68.9
Sopen00g007710 Solanum pennellii HOM05D006274 ORTHO05D007782 3.1e-59 232.3 180 68.9
CSS0028463 Camellia sinensis var. sinensis HOM05D006274 ORTHO05D007782 4.1e-59 231.9 183 71.0
Ciclev10002605m.g Citrus clementina HOM05D006274 ORTHO05D007782 5.4e-59 231.5 181 70.2
MD15G1382000 Malus domestica HOM05D006274 ORTHO05D007782 7.0e-59 231.1 179 67.0
Oeu024592.1 Olea europaea HOM05D006274 ORTHO05D007782 2.0e-58 229.6 188 68.6
Solyc04g076050.4 Solanum lycopersicum HOM05D006274 ORTHO05D007782 2.0e-58 229.6 179 68.2
Migut.J00587 Erythranthe guttata HOM05D006274 ORTHO05D007782 1.0e-57 227.3 189 66.7
Hma1.2p1_0010F.1_g006970 Hydrangea macrophylla HOM05D006274 ORTHO05D007782 1.0e-57 227.3 190 66.8
Ca_22436_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 1.3e-57 226.9 192 69.8
Actinidia19642 Actinidia chinensis HOM05D006274 ORTHO05D007782 3.8e-57 225.3 191 67.0
SGA_v2.0_scaffold10G05208 Striga asiatica HOM05D006274 ORTHO05D007782 3.8e-57 225.3 190 66.3
Glyma.06G094500 Glycine max HOM05D006274 ORTHO05D007782 1.1e-56 223.8 182 67.0
MBI02_g18284_MAGBIO Magnolia biondii HOM05D006274 ORTHO05D007782 1.9e-56 223.0 171 68.4
Sc01g0001050 Simmondsia chinensis HOM05D006274 ORTHO05D007782 1.9e-56 223.0 185 64.9
Glyma.04G092700 Glycine max HOM05D006274 ORTHO05D007782 2.5e-56 222.6 188 64.4
VMungo1309G0647 Vigna mungo HOM05D006274 ORTHO05D007782 5.6e-56 221.5 180 66.1
Dinv44839 Davidia involucrata HOM05D006274 ORTHO05D007782 7.3e-56 221.1 195 65.6
Eucgr.F02129 Eucalyptus grandis HOM05D006274 ORTHO05D007782 9.5e-56 220.7 180 66.1
Phvul.009G143300 Phaseolus vulgaris HOM05D006274 ORTHO05D007782 9.5e-56 220.7 180 65.6
Sed0009042 Sechium edule HOM05D006274 ORTHO05D007782 1.2e-55 220.3 192 64.1
GSVIVG01009140001 Vitis vinifera HOM05D006274 ORTHO05D007782 1.2e-55 220.3 162 72.2
CsaV3_2G030110 Cucumis sativus L. HOM05D006274 ORTHO05D007782 1.6e-55 219.9 192 63.5
Nitab4.5_0010618g0040 Nicotiana tabacum HOM05D006274 ORTHO05D007782 1.6e-55 219.9 178 68.0
Medtr3g100630 Medicago truncatula HOM05D006274 ORTHO05D007782 3.6e-55 218.8 183 67.8
CDE10G0432 Ceratophyllum demersum HOM05D006274 ORTHO05D007782 1.0e-54 217.2 190 61.1
FvH4_5g35790 Fragaria vesca HOM05D006274 ORTHO05D007782 1.0e-54 217.2 182 65.9
TPR.G26025 Trifolium pratense HOM05D006274 ORTHO05D007782 1.0e-54 217.2 178 68.0
Gorai.009G231100 Gossypium raimondii HOM05D006274 ORTHO05D007782 1.4e-54 216.9 183 67.8
FAN18G0017 Fragaria x ananassa HOM05D006274 ORTHO05D007782 2.3e-54 216.1 182 65.4
RcHm_v2.0_Chr7g0237451 Rosa chinensis HOM05D006274 ORTHO05D007782 2.3e-54 216.1 171 66.7
Gohir.A05G218200 Gossypium hirsutum HOM05D006274 ORTHO05D007782 3.0e-54 215.7 182 66.5
vmacro04670 Vaccinium macrocarpon HOM05D006274 ORTHO05D007782 3.0e-54 215.7 203 60.6
Dinv42635 Davidia involucrata HOM05D006274 ORTHO05D007782 5.2e-54 214.9 190 67.4
Gohir.A06G032628 Gossypium hirsutum HOM05D006274 ORTHO05D007782 6.8e-54 214.5 169 68.6
Lsat_1_v5_gn_9_74940 Lactuca sativa HOM05D006274 ORTHO05D007782 6.8e-54 214.5 189 65.6
FAN04G0860 Fragaria x ananassa HOM05D006274 ORTHO05D007782 1.2e-53 213.8 182 65.4
Lj1g0015671 Lotus japonicus HOM05D006274 ORTHO05D007782 1.2e-53 213.8 182 65.4
Lalb_Chr08g0242401 Lupinus albus HOM05D006274 ORTHO05D007782 4.4e-53 211.8 176 63.1
PSO210G3104 Papaver somniferum HOM05D006274 ORTHO05D007782 4.4e-53 211.8 170 68.2
Sabra02G0081200 Salix brachista HOM05D006274 ORTHO05D007782 4.4e-53 211.8 237 54.4
EL10Ac1g01111 Beta vulgaris HOM05D006274 ORTHO05D007782 7.5e-53 211.1 180 65.0
ECA232G3909 Erigeron canadensis HOM05D006274 ORTHO05D007782 2.9e-52 209.1 186 63.4
Zm00001eb006540 Zea mays HOM05D006274 ORTHO05D007782 4.9e-52 208.4 174 64.9
ClCG08G011520 Citrullus lanatus HOM05D006274 ORTHO05D007782 1.4e-51 206.8 202 59.4
PSO170G6492 Papaver somniferum HOM05D006274 ORTHO05D007782 1.8e-51 206.5 173 66.5
HanXRQChr09g0249401 Helianthus annuus HOM05D006274 ORTHO05D007782 7.0e-51 204.5 176 67.0
Ca_15989_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 9.2e-51 204.1 162 71.0
unitig_26.g9169 Utricularia gibba HOM05D006274 ORTHO05D007782 9.2e-51 204.1 188 60.6
ATR0022G028 Amborella trichopoda HOM05D006274 ORTHO05D007782 7.8e-50 201.1 178 62.9
Hund16871 Selenicereus undatus HOM05D006274 ORTHO05D007782 7.8e-50 201.1 186 62.9
Cpa.g.sc309.7 Carica papaya HOM05D006274 ORTHO05D007782 1.0e-49 200.7 191 61.8
Nn1g05513 Nelumbo nucifera HOM05D006274 ORTHO05D007782 1.5e-48 196.8 176 62.5
Os03g0186950 Oryza sativa ssp. japonica HOM05D006274 ORTHO05D007782 1.5e-48 196.8 169 64.5
Peaxi162Scf00281g00415 Petunia axillaris HOM05D006274 ORTHO05D007782 3.3e-48 195.7 176 63.1
Nitab4.5_0001507g0040 Nicotiana tabacum HOM05D006274 ORTHO05D007782 4.3e-48 195.3 186 61.8
MELO3C011069.2 Cucumis melo HOM05D006274 ORTHO05D007782 1.2e-47 193.7 210 55.2
Aqoxy5G01327 Aquilegia oxysepala HOM05D006274 ORTHO05D007782 2.1e-47 193.0 181 59.7
TWI12G0161 Tripterygium wilfordii HOM05D006274 ORTHO05D007782 3.6e-47 192.2 130 73.8
Gohir.D05G223833 Gossypium hirsutum HOM05D006274 ORTHO05D007782 4.7e-47 191.8 179 64.2
Os10g0378300 Oryza sativa ssp. japonica HOM05D006274 ORTHO05D007782 2.3e-46 189.5 111 82.9
Sopen00g004300 Solanum pennellii HOM05D006274 ORTHO05D007782 1.2e-45 187.2 112 80.4
AUR62019013 Chenopodium quinoa HOM05D006274 ORTHO05D007782 7.5e-45 184.5 113 78.8
AUR62027854 Chenopodium quinoa HOM05D006274 ORTHO05D007782 1.3e-44 183.7 113 78.8
DCAR_012863 Daucus carota HOM05D006274 ORTHO05D007782 1.1e-43 180.6 113 77.0
MSTRG.6044 Avicennia marina HOM05D006274 ORTHO05D007782 1.9e-43 179.9 113 77.0
CAN.G1658.2 Capsicum annuum HOM05D006274 ORTHO05D007782 9.2e-43 177.6 118 74.6
Actinidia29612 Actinidia chinensis HOM05D006274 ORTHO05D007782 8.6e-41 171.0 171 60.8
arahy.Tifrunner.gnm1.ann1.44X20L Arachis hypogaea HOM05D006274 ORTHO05D007782 1.1e-40 170.6 145 64.1
arahy.Tifrunner.gnm1.ann1.SMA5HD Arachis hypogaea HOM05D006274 ORTHO05D007782 5.6e-40 168.3 145 63.4
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 3.6e-39 165.6 138 61.6
CANSAT64G0910 Cannabis sativa HOM05D006274 ORTHO05D007782 1.2e-37 160.6 120 72.5
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 1.3e-36 157.1 88 83.0
FAN13G2708 Fragaria x ananassa HOM05D006274 ORTHO05D007782 1.1e-35 154.1 92 79.3
FAN08G3216 Fragaria x ananassa HOM05D006274 ORTHO05D007782 9.2e-35 151.0 92 78.3
Mapoly0011s0077 Marchantia polymorpha HOM05D006274 ORTHO05D007782 9.2e-35 151.0 145 57.9
Atru.chr13.1045 Acer truncatum HOM05D006274 ORTHO05D007782 1.3e-33 147.1 100 77.0
SMO119G0339 Selaginella moellendorffii HOM05D006274 ORTHO05D007782 5.1e-33 145.2 110 62.7
Sed0010188 Sechium edule HOM05D006274 ORTHO05D007782 6.2e-31 138.3 92 72.8
PRCOL_00002052 Prasinoderma coloniale HOM05D006274 ORTHO05D007782 1.4e-30 137.1 94 69.1
CBR_g39263 Chara braunii HOM05D002374 ORTHO05D003594 6.8e-30 134.8 101 62.4
Cre02.g082350 Chlamydomonas reinhardtii HOM05D006274 ORTHO05D007782 7.6e-29 131.3 97 63.9
Psat5g045880 Pisum sativum HOM05D006274 ORTHO05D007782 1.3e-28 130.6 120 60.0
SEGI_33866 Sequoiadendron giganteum HOM05D006274 ORTHO05D007782 4.9e-28 128.6 122 54.1
SEGI_16140 Sequoiadendron giganteum HOM05D006274 ORTHO05D007782 9.2e-27 124.4 90 64.4
Rhsim07G0210300 Rhododendron simsii HOM05D006274 ORTHO05D007782 1.0e-25 120.9 70 78.6
EL10Ac9g22466 Beta vulgaris HOM05D006274 ORTHO05D007782 1.9e-24 116.7 70 75.7
AagrBONN_evm.TU.Sc2ySwM_228.3755 Anthoceros agrestis HOM05D006274 ORTHO05D007782 2.1e-23 113.2 102 59.8
Pp3c21_2600 Physcomitrium patens HOM05D006274 ORTHO05D007782 3.6e-23 112.5 181 41.4
CBR_g7959 Chara braunii HOM05D006274 ORTHO05D007782 8.1e-23 111.3 92 59.8
Ca_28793_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 8.7e-09 64.7 90 33.3


User provided reference genes

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