Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 5.8e-83 311.2 205 100.0
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 5.8e-83 311.2 205 100.0
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 7.1e-81 304.3 205 95.6
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 1.8e-79 299.7 205 94.6
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 1.1e-78 297.0 218 93.1
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 1.4e-76 290.0 218 86.2
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 3.1e-68 262.3 205 81.5
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 9.0e-68 260.8 203 80.8
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 9.0e-68 260.8 203 82.3
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 1.2e-67 260.4 202 86.1
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 4.9e-66 255.0 205 80.0
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 5.5e-65 251.5 216 77.3
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 1.0e-63 247.3 197 81.2
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 3.9e-63 245.4 197 80.2
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 6.7e-63 244.6 203 80.3
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 6.7e-63 244.6 197 80.2
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 1.1e-62 243.8 202 80.7
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 1.9e-62 243.0 204 83.8
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 1.3e-61 240.4 204 81.9
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 1.3e-61 240.4 206 73.8
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 8.5e-58 227.6 216 73.6
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 1.1e-57 227.3 197 77.2
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 4.3e-54 215.3 203 77.8
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 1.8e-47 193.4 189 71.4
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 2.6e-46 189.5 208 63.5
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 3.7e-45 185.7 200 58.5
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 9.1e-44 181.0 207 67.6
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 3.8e-42 175.6 203 60.1
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 5.0e-42 175.3 206 65.0
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 5.0e-42 175.3 201 66.2
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 8.5e-42 174.5 208 61.1
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 3.6e-40 169.1 203 64.5
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 2.0e-38 163.3 198 49.0
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 2.0e-38 163.3 199 60.3
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 2.6e-38 162.9 216 51.9
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 1.3e-37 160.6 203 56.7
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 2.8e-37 159.5 209 66.5
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 8.2e-37 157.9 203 58.1
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 8.2e-37 157.9 212 51.9
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 8.2e-37 157.9 231 49.4
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 1.1e-36 157.5 205 49.8
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 1.1e-36 157.5 221 57.5
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 1.4e-36 157.1 205 48.3
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 2.4e-36 156.4 198 48.0
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 2.4e-36 156.4 203 57.6
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 2.4e-36 156.4 198 48.0
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 2.0e-35 153.3 203 56.7
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 3.5e-35 152.5 210 60.0
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 4.5e-35 152.1 203 50.2
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 5.9e-35 151.8 208 44.2
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 1.0e-34 151.0 214 61.2
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 1.0e-34 151.0 209 61.7
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 2.9e-34 149.4 212 59.4
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 3.8e-34 149.1 216 59.3
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 3.8e-34 149.1 210 58.6
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 5.0e-34 148.7 207 49.3
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 1.1e-33 147.5 208 47.1
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 1.1e-33 147.5 205 65.4
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 1.5e-33 147.1 215 43.3
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 1.9e-33 146.7 214 44.4
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 1.9e-33 146.7 213 42.7
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 4.2e-33 145.6 218 53.7
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 4.2e-33 145.6 212 59.0
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 4.2e-33 145.6 211 47.4
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 5.5e-33 145.2 211 48.3
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 7.2e-33 144.8 209 56.0
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 7.2e-33 144.8 209 56.0
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.2e-32 144.1 219 55.3
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.2e-32 144.1 219 55.3
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 1.6e-32 143.7 211 40.3
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 3.6e-32 142.5 212 48.6
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 4.7e-32 142.1 206 59.7
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 4.7e-32 142.1 211 52.6
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 4.7e-32 142.1 205 47.8
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 6.1e-32 141.7 198 45.5
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 6.1e-32 141.7 198 45.5
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 6.1e-32 141.7 198 45.5
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 6.1e-32 141.7 223 58.7
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 8.0e-32 141.4 211 46.9
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 1.0e-31 141.0 228 54.8
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 1.0e-31 141.0 226 56.6
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.0e-31 141.0 214 44.9
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 1.0e-31 141.0 207 55.1
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 1.4e-31 140.6 209 64.1
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 3.0e-31 139.4 203 65.0
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 3.0e-31 139.4 245 53.9
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 3.0e-31 139.4 208 45.2
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 6.7e-31 138.3 198 60.1
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 6.7e-31 138.3 199 62.8
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 6.7e-31 138.3 217 39.2
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 1.5e-30 137.1 212 58.5
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 1.5e-30 137.1 209 64.6
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 3.3e-30 136.0 205 64.4
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 3.3e-30 136.0 220 45.9
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 3.3e-30 136.0 202 48.5
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 4.4e-30 135.6 205 51.7
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 4.4e-30 135.6 205 62.0
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 5.7e-30 135.2 190 46.3
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 5.7e-30 135.2 232 46.1
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 7.5e-30 134.8 213 49.8
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 9.7e-30 134.4 204 61.3
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.3e-29 134.0 227 57.3
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 1.3e-29 134.0 214 44.9
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 2.2e-29 133.3 205 48.3
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 2.8e-29 132.9 224 52.7
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 6.3e-29 131.7 198 41.9
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 6.3e-29 131.7 228 55.7
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 6.3e-29 131.7 216 50.0
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 8.2e-29 131.3 198 42.4
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 1.4e-28 130.6 153 52.9
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 4.1e-28 129.0 211 59.7
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 4.1e-28 129.0 223 38.1
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 7.0e-28 128.3 222 54.1
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 7.0e-28 128.3 205 45.4
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 1.2e-27 127.5 198 59.1
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 2.7e-27 126.3 228 38.6
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 3.5e-27 125.9 197 48.7
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 3.5e-27 125.9 205 44.9
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 5.9e-27 125.2 189 47.1
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 7.7e-27 124.8 189 56.6
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 7.7e-27 124.8 189 56.6
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 1.3e-26 124.0 211 38.4
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 1.7e-26 123.6 207 44.0
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 1.7e-26 123.6 189 55.6
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 1.7e-26 123.6 189 55.6
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.7e-26 123.6 256 52.0
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.7e-26 123.6 198 49.0
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 2.2e-26 123.2 211 46.9
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 3.8e-26 122.5 205 40.0
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 3.8e-26 122.5 203 59.1
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 6.5e-26 121.7 216 48.1
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 6.5e-26 121.7 200 47.0
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 6.5e-26 121.7 201 37.8
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 6.5e-26 121.7 199 39.2
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 8.5e-26 121.3 220 41.4
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 1.9e-25 120.2 228 43.4
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 1.9e-25 120.2 198 59.6
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 2.5e-25 119.8 214 50.0
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 2.5e-25 119.8 199 59.3
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 2.5e-25 119.8 224 37.5
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 3.2e-25 119.4 200 45.0
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 7.2e-25 118.2 144 72.9
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 1.6e-24 117.1 200 60.5
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 2.7e-24 116.3 207 54.6
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 6.1e-24 115.2 248 48.8
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 1.4e-23 114.0 239 46.9
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 4.0e-23 112.5 164 38.4
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 1.5e-22 110.5 154 69.5
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.5e-22 110.5 144 54.9
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 1.5e-22 110.5 206 34.0
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 9.8e-22 107.8 218 39.9
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 3.7e-21 105.9 234 36.3
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 8.3e-21 104.8 155 60.0
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 5.9e-19 98.6 200 39.0
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.3e-18 97.4 200 34.5
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 8.6e-18 94.7 196 41.3
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 1.1e-17 94.4 197 38.1
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 1.5e-17 94.0 138 46.4
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 6.1e-16 88.6 113 46.0
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 8.8e-15 84.7 233 32.2
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 1.5e-14 84.0 117 68.4
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 1.5e-14 84.0 199 32.2
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 9.8e-14 81.3 157 35.7
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 2.2e-13 80.1 225 33.8
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.8e-12 77.0 216 32.9
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 3.5e-11 72.8 232 31.9
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 5.0e-10 68.9 95 40.0
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 6.6e-10 68.6 127 37.0
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 4.3e-09 65.9 197 26.4
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 8.0e-08 61.6 203 45.8
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.4e-07 60.8 147 25.2
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.8e-07 60.5 203 45.8
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 2.3e-07 60.1 203 45.3
Pp3c27_4970 Physcomitrium patens HOM05D013579 ORTHO05D004077 2.3e-07 60.1 42 59.5
Pp3c16_12300 Physcomitrium patens HOM05D013579 ORTHO05D001508 4.0e-07 59.3 67 44.8
Pp3c5_5250 Physcomitrium patens HOM05D013579 ORTHO05D015305 3.4e-06 56.2 50 52.0
Pp3c14_14200 Physcomitrium patens HOM05D022619 ORTHO05D026045 7.5e-06 55.1 63 42.9
Mapoly0029s0076 Marchantia polymorpha HOM05D013579 ORTHO05D015305 9.8e-06 54.7 66 39.4
Pp3c17_5610 Physcomitrium patens HOM05D022619 ORTHO05D026045 9.8e-06 54.7 49 44.9


User provided reference genes

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