Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11431 Brassica carinata HOM05D006230 ORTHO05D007598 2.4e-72 275.4 142 100.0
C04p15650 Brassica napus HOM05D006230 ORTHO05D007598 2.4e-72 275.4 142 100.0
BolC4t23134H Brassica oleracea HOM05D006230 ORTHO05D007598 1.1e-69 266.5 143 97.9
BcaB02g10562 Brassica carinata HOM05D006230 ORTHO05D007598 3.5e-63 245.0 139 91.4
Sp4g15790 Schrenkiella parvula HOM05D006230 ORTHO05D007598 4.8e-60 234.6 146 87.0
Carub.0004s1508 Capsella rubella HOM05D006230 ORTHO05D007598 3.1e-59 231.9 146 86.3
Thhalv10017390m.g Eutrema salsugineum HOM05D006230 ORTHO05D007598 3.1e-59 231.9 144 86.8
BcaB06g28689 Brassica carinata HOM05D006230 ORTHO05D007598 9.0e-59 230.3 144 84.0
AL4G29120 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 1.5e-58 229.6 146 85.6
CARHR127460 Cardamine hirsuta HOM05D006230 ORTHO05D007598 3.4e-58 228.4 146 85.6
AT2G33450 Arabidopsis thaliana HOM05D006230 ORTHO05D007598 4.5e-58 228.0 146 84.9
A04p25750 Brassica napus HOM05D006230 ORTHO05D007598 4.5e-58 228.0 144 84.0
BolC4t27775H Brassica oleracea HOM05D006230 ORTHO05D007598 1.3e-57 226.5 144 85.4
BraA04t18078Z Brassica rapa HOM05D006230 ORTHO05D007598 6.5e-57 224.2 144 84.0
C04p62980 Brassica napus HOM05D006230 ORTHO05D007598 1.1e-56 223.4 144 84.7
BcaC02g07821 Brassica carinata HOM05D006230 ORTHO05D007598 2.3e-54 215.7 144 82.6
Sp1g03290 Schrenkiella parvula HOM05D006230 ORTHO05D007598 1.3e-52 209.9 148 79.1
Carub.0001s0365 Capsella rubella HOM05D006230 ORTHO05D007598 6.3e-52 207.6 141 80.9
Aa31LG5G3840 Aethionema arabicum HOM05D006230 ORTHO05D007598 9.1e-51 203.8 148 77.7
AL1G14110 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 2.0e-50 202.6 142 78.9
THA.LOC104801077 Tarenaya hassleriana HOM05D006230 ORTHO05D007598 8.5e-49 197.2 149 73.8
CiPaw.02G108600 Carya illinoinensis HOM05D006230 ORTHO05D007598 2.8e-44 182.2 118 80.5
Potri.010G068500 Populus trichocarpa HOM05D006230 ORTHO05D007598 4.8e-44 181.4 128 76.6
Sabra10G0038500 Salix brachista HOM05D006230 ORTHO05D007598 6.3e-44 181.0 118 79.7
Ciclev10006136m.g Citrus clementina HOM05D006230 ORTHO05D007598 1.1e-43 180.3 156 66.7
QL06p019992 Quercus lobata HOM05D006230 ORTHO05D007598 5.3e-43 177.9 124 75.0
Lalb_Chr03g0037521 Lupinus albus HOM05D006230 ORTHO05D007598 6.9e-43 177.6 123 78.0
Cfa014753 Carpinus fangiana HOM05D006230 ORTHO05D007598 9.1e-43 177.2 154 66.9
Lalb_Chr01g0020881 Lupinus albus HOM05D006230 ORTHO05D007598 9.1e-43 177.2 123 75.6
Ca_05177_v3 Cicer arietinum L. HOM05D006230 ORTHO05D007598 1.2e-42 176.8 134 70.9
FvH4_4g04200 Fragaria vesca HOM05D006230 ORTHO05D007598 1.2e-42 176.8 129 71.3
Atru.chr4.1981 Acer truncatum HOM05D006230 ORTHO05D007598 2.6e-42 175.6 148 70.3
Manes.15G043800 Manihot esculenta HOM05D006230 ORTHO05D007598 2.6e-42 175.6 135 71.1
FAN12G2171 Fragaria x ananassa HOM05D006230 ORTHO05D007598 5.9e-42 174.5 125 72.8
DCAR_002306 Daucus carota HOM05D006230 ORTHO05D007598 7.7e-42 174.1 130 71.5
MD16G1223800 Malus domestica HOM05D006230 ORTHO05D007598 7.7e-42 174.1 116 78.4
Prupe.1G045100 Prunus persica HOM05D006230 ORTHO05D007598 1.0e-41 173.7 116 75.9
RcHm_v2.0_Chr4g0394691 Rosa chinensis HOM05D006230 ORTHO05D007598 1.0e-41 173.7 134 68.7
Aqoxy2G03714 Aquilegia oxysepala HOM05D006230 ORTHO05D007598 1.3e-41 173.3 127 72.4
Haze_11428 Corylus avellana HOM05D006230 ORTHO05D007598 1.3e-41 173.3 154 65.6
MD13G1218400 Malus domestica HOM05D006230 ORTHO05D007598 1.7e-41 172.9 114 79.8
CANSAT78G0232 Cannabis sativa HOM05D006230 ORTHO05D007598 3.8e-41 171.8 116 80.2
CANSAT78G0887 Cannabis sativa HOM05D006230 ORTHO05D007598 3.8e-41 171.8 116 80.2
TWI73G0434 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 5.0e-41 171.4 118 78.8
PSO017G6779 Papaver somniferum HOM05D006230 ORTHO05D007598 6.5e-41 171.0 129 72.1
Dinv27088 Davidia involucrata HOM05D006230 ORTHO05D007598 8.5e-41 170.6 118 77.1
Eucgr.H02995 Eucalyptus grandis HOM05D006230 ORTHO05D007598 8.5e-41 170.6 120 75.0
FAN17G1889 Fragaria x ananassa HOM05D006230 ORTHO05D007598 8.5e-41 170.6 129 69.8
Medtr1g041320 Medicago truncatula HOM05D006230 ORTHO05D007598 8.5e-41 170.6 129 70.5
Phvul.007G278700 Phaseolus vulgaris HOM05D006230 ORTHO05D007598 8.5e-41 170.6 121 75.2
Psat6g103800 Pisum sativum HOM05D006230 ORTHO05D007598 8.5e-41 170.6 129 71.3
Potri.008G169800 Populus trichocarpa HOM05D006230 ORTHO05D007598 1.1e-40 170.2 118 73.7
PSO063G4949 Papaver somniferum HOM05D006230 ORTHO05D007598 1.9e-40 169.5 129 69.8
CsaV3_3G011880 Cucumis sativus L. HOM05D006230 ORTHO05D007598 2.5e-40 169.1 132 73.5
Nitab4.5_0001425g0090 Nicotiana tabacum HOM05D006230 ORTHO05D007598 2.5e-40 169.1 120 76.7
PGR004G2031 Punica granatum HOM05D006230 ORTHO05D007598 3.2e-40 168.7 127 74.0
COL.COLO4_15930 Corchorus olitorius HOM05D006230 ORTHO05D007598 4.2e-40 168.3 146 67.1
Duzib151G0304 Durio zibethinus HOM05D006230 ORTHO05D007598 4.2e-40 168.3 120 75.8
Lj6g0026311 Lotus japonicus HOM05D006230 ORTHO05D007598 4.2e-40 168.3 121 74.4
Nitab4.5_0006936g0040 Nicotiana tabacum HOM05D006230 ORTHO05D007598 4.2e-40 168.3 131 72.5
ClCG05G004160 Citrullus lanatus HOM05D006230 ORTHO05D007598 5.5e-40 167.9 131 71.8
TWI53G0221 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 5.5e-40 167.9 118 77.1
TAR636G3560 Trochodendron aralioides HOM05D006230 ORTHO05D007598 5.5e-40 167.9 118 75.4
CSS0007771 Camellia sinensis var. sinensis HOM05D006230 ORTHO05D007598 7.2e-40 167.5 137 68.6
Hma1.2p1_0112F.1_g054490 Hydrangea macrophylla HOM05D006230 ORTHO05D007598 7.2e-40 167.5 131 67.9
MELO3C006400.2 Cucumis melo HOM05D006230 ORTHO05D007598 9.4e-40 167.2 143 67.8
Gohir.A02G041200 Gossypium hirsutum HOM05D006230 ORTHO05D007598 9.4e-40 167.2 148 68.9
Sed0003219 Sechium edule HOM05D006230 ORTHO05D007598 9.4e-40 167.2 132 74.2
Sopen09g033320 Solanum pennellii HOM05D006230 ORTHO05D007598 9.4e-40 167.2 120 75.8
Thecc.04G260000 Theobroma cacao HOM05D006230 ORTHO05D007598 9.4e-40 167.2 147 67.3
Peaxi162Scf00602g00421 Petunia axillaris HOM05D006230 ORTHO05D007598 1.2e-39 166.8 130 72.3
Sc13g0005900 Simmondsia chinensis HOM05D006230 ORTHO05D007598 1.6e-39 166.4 126 70.6
Solyc09g090410.3 Solanum lycopersicum HOM05D006230 ORTHO05D007598 1.6e-39 166.4 120 75.0
Gohir.D02G047000 Gossypium hirsutum HOM05D006230 ORTHO05D007598 2.1e-39 166.0 148 67.6
Lsat_1_v5_gn_2_39681 Lactuca sativa HOM05D006230 ORTHO05D007598 2.1e-39 166.0 118 78.0
Sed0015876 Sechium edule HOM05D006230 ORTHO05D007598 2.1e-39 166.0 135 70.4
Cpa.g.sc44.25 Carica papaya HOM05D006230 ORTHO05D007598 2.7e-39 165.6 118 75.4
Gorai.005G052000 Gossypium raimondii HOM05D006230 ORTHO05D007598 2.7e-39 165.6 148 67.6
PGSC0003DMG400017161 Solanum tuberosum HOM05D006230 ORTHO05D007598 2.7e-39 165.6 120 75.0
Glyma.10G002600 Glycine max HOM05D006230 ORTHO05D007598 3.6e-39 165.2 123 71.5
CAN.G220.45 Capsicum annuum HOM05D006230 ORTHO05D007598 6.1e-39 164.5 120 75.0
Duzib212G0996 Durio zibethinus HOM05D006230 ORTHO05D007598 6.1e-39 164.5 147 66.7
ECA234G3973 Erigeron canadensis HOM05D006230 ORTHO05D007598 6.1e-39 164.5 121 71.1
TPR.G32792 Trifolium pratense HOM05D006230 ORTHO05D007598 6.1e-39 164.5 120 70.8
Zm00001eb222850 Zea mays HOM05D006230 ORTHO05D007598 1.8e-38 162.9 141 64.5
Actinidia20827 Actinidia chinensis HOM05D006230 ORTHO05D007598 2.3e-38 162.5 118 72.0
AUR62015538 Chenopodium quinoa HOM05D006230 ORTHO05D007598 2.3e-38 162.5 129 66.7
EL10Ac3g04971 Beta vulgaris HOM05D006230 ORTHO05D007598 3.0e-38 162.2 133 69.2
GSVIVG01027870001 Vitis vinifera HOM05D006230 ORTHO05D007598 3.0e-38 162.2 120 71.7
Oeu023312.1 Olea europaea HOM05D006230 ORTHO05D007598 5.2e-38 161.4 127 69.3
Actinidia35808 Actinidia chinensis HOM05D006230 ORTHO05D007598 1.1e-37 160.2 118 70.3
Os05g0101400 Oryza sativa ssp. japonica HOM05D006230 ORTHO05D007598 1.5e-37 159.8 140 64.3
Gorai.011G177300 Gossypium raimondii HOM05D006230 ORTHO05D007598 2.0e-37 159.5 147 66.0
Gohir.A10G109400 Gossypium hirsutum HOM05D006230 ORTHO05D007598 2.6e-37 159.1 147 66.0
Gohir.D10G157800 Gossypium hirsutum HOM05D006230 ORTHO05D007598 2.6e-37 159.1 147 66.0
HanXRQChr14g0434851 Helianthus annuus HOM05D006230 ORTHO05D007598 5.7e-37 157.9 123 71.5
ATR0736G074 Amborella trichopoda HOM05D006230 ORTHO05D007598 9.7e-37 157.1 123 69.9
Zm00001eb047510 Zea mays HOM05D006230 ORTHO05D007598 9.7e-37 157.1 122 70.5
Cc03_g05900 Coffea canephora HOM05D006230 ORTHO05D007598 1.3e-36 156.8 128 67.2
CDE05G0971 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 2.4e-35 152.5 128 66.4
CDE11G0022 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 2.4e-35 152.5 84 91.7
arahy.Tifrunner.gnm1.ann1.ADZ0J4 Arachis hypogaea HOM05D006230 ORTHO05D007598 4.5e-34 148.3 78 91.0
HPP92_012809 Vanilla planifolia HOM05D006230 ORTHO05D007598 4.5e-34 148.3 144 57.6
Hund11917 Selenicereus undatus HOM05D006230 ORTHO05D007598 5.9e-34 147.9 129 64.3
vmacro08530 Vaccinium macrocarpon HOM05D006230 ORTHO05D007598 5.9e-34 147.9 145 63.4
Migut.G00496 Erythranthe guttata HOM05D006230 ORTHO05D007598 3.8e-33 145.2 130 64.6
Oeu059405.1 Olea europaea HOM05D006230 ORTHO05D007598 3.8e-33 145.2 163 54.6
Thecc.10G124200 Theobroma cacao HOM05D006230 ORTHO05D007598 6.5e-33 144.4 78 89.7
SalBow3G4585 Salvia bowleyana HOM05D006230 ORTHO05D007598 2.5e-32 142.5 141 56.7
RcHm_v2.0_Chr4g0394651 Rosa chinensis HOM05D006230 ORTHO05D007598 5.5e-32 141.4 135 58.5
SGA_v2.0_scaffold67G22731 Striga asiatica HOM05D006230 ORTHO05D007598 7.2e-32 141.0 153 55.6
Prupe.8G083300 Prunus persica HOM05D006230 ORTHO05D007598 3.6e-31 138.7 82 80.5
unitig_32.g10851 Utricularia gibba HOM05D006230 ORTHO05D007598 1.4e-30 136.7 112 65.2
SEGI_13554 Sequoiadendron giganteum HOM05D006230 ORTHO05D007598 2.3e-30 136.0 127 59.1
Rhsim04G0174900 Rhododendron simsii HOM05D006230 ORTHO05D007598 4.0e-30 135.2 113 66.4
MD00G1118000 Malus domestica HOM05D006230 ORTHO05D007598 8.8e-30 134.0 75 84.0
Pp3c6_1140 Physcomitrium patens HOM05D006230 ORTHO05D007598 2.2e-25 119.4 108 62.0
AagrBONN_evm.TU.Sc2ySwM_228.3795 Anthoceros agrestis HOM05D006230 ORTHO05D007598 1.5e-24 116.7 128 53.1
Pp3c5_28500 Physcomitrium patens HOM05D006230 ORTHO05D007598 4.7e-23 111.7 126 51.6
Mapoly0087s0077 Marchantia polymorpha HOM05D006230 ORTHO05D007598 1.4e-22 110.2 126 50.0
Ah.04g155450 Amaranthus hybridus HOM05D000071 ORTHO05D007598 2.6e-21 105.9 96 61.5
CBR_g23072 Chara braunii HOM05D006230 ORTHO05D007598 3.4e-21 105.5 78 67.9
SMO131G0001 Selaginella moellendorffii HOM05D006230 ORTHO05D007598 7.5e-21 104.4 75 64.0
Duzib052G0467 Durio zibethinus HOM05D006230 ORTHO05D007598 9.1e-19 97.4 86 62.8
Cre06.g265800 Chlamydomonas reinhardtii HOM05D006230 ORTHO05D007598 2.9e-17 92.4 83 55.4
MCO07G061 Micromonas commoda HOM05D006230 ORTHO05D007598 2.1e-15 86.3 73 58.9
Nn3g19733 Nelumbo nucifera HOM05D006230 ORTHO05D007598 7.3e-08 61.2 35 88.6
VMungo0684G0001 Vigna mungo HOM05D006230 ORTHO05D007598 1.8e-06 56.6 72 40.3


User provided reference genes

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