Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 4.2e-139 498.0 258 100.0
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 4.8e-135 484.6 258 98.1
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 3.1e-126 455.3 258 92.2
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 1.6e-125 453.0 258 92.2
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 5.0e-124 448.0 258 91.9
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 8.0e-114 414.1 256 87.9
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 5.0e-108 394.8 247 87.0
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 1.4e-105 386.7 271 80.1
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 8.9e-105 384.0 271 79.7
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 1.7e-103 379.8 252 83.3
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 3.3e-99 365.5 282 74.5
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 9.5e-99 364.0 282 74.1
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 2.1e-98 362.8 282 73.8
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 2.1e-98 362.8 282 73.8
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 2.8e-98 362.5 282 74.1
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 4.7e-98 361.7 282 73.8
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 8.9e-97 357.5 282 73.0
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 3.4e-96 355.5 282 72.7
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 4.1e-94 348.6 282 70.9
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 5.4e-94 348.2 282 70.6
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 6.0e-93 344.7 282 69.9
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 1.0e-92 344.0 282 70.2
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 2.1e-90 336.3 257 75.5
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 7.6e-88 327.8 282 67.0
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 9.9e-88 327.4 282 67.4
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 9.9e-88 327.4 282 67.4
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 9.9e-88 327.4 282 67.4
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 1.4e-86 323.6 286 66.4
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 3.5e-85 318.9 324 60.2
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 8.4e-79 297.7 280 59.6
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 1.9e-78 296.6 279 59.9
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 1.9e-78 296.6 284 60.2
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 5.4e-78 295.0 280 60.0
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 5.4e-78 295.0 280 59.3
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 1.6e-77 293.5 280 59.6
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 1.6e-77 293.5 280 59.6
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 3.9e-76 288.9 282 57.4
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 5.1e-76 288.5 282 57.8
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 5.1e-76 288.5 282 58.2
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 6.6e-76 288.1 282 58.5
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 8.7e-76 287.7 282 57.4
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 8.7e-76 287.7 282 58.2
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 1.9e-75 286.6 282 57.8
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 3.3e-75 285.8 282 57.4
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 3.3e-75 285.8 282 56.7
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 3.3e-75 285.8 282 57.4
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 4.3e-75 285.4 282 57.4
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 4.3e-75 285.4 282 57.4
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 4.3e-75 285.4 282 57.4
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 7.3e-75 284.6 253 68.4
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 9.6e-75 284.3 282 56.4
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 1.3e-74 283.9 282 57.1
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 1.6e-74 283.5 282 56.0
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 2.1e-74 283.1 282 57.4
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 2.8e-74 282.7 282 57.4
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 2.8e-74 282.7 282 57.1
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 3.6e-74 282.3 282 57.1
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 3.6e-74 282.3 282 57.1
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 3.6e-74 282.3 282 57.1
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 3.6e-74 282.3 282 56.4
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 4.8e-74 282.0 282 57.1
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 4.8e-74 282.0 282 57.4
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 6.2e-74 281.6 282 56.7
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 8.1e-74 281.2 282 56.7
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 1.4e-73 280.4 278 57.9
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 1.8e-73 280.0 282 56.7
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 1.8e-73 280.0 282 57.4
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 2.4e-73 279.6 282 56.7
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 3.1e-73 279.3 293 55.3
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 4.0e-73 278.9 279 57.0
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 4.0e-73 278.9 279 57.3
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 4.0e-73 278.9 282 56.4
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 4.0e-73 278.9 282 56.4
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 6.9e-73 278.1 282 56.0
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 9.0e-73 277.7 281 56.6
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 9.0e-73 277.7 279 57.0
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 5.8e-72 275.0 279 56.6
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 7.6e-72 274.6 279 56.6
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 1.3e-71 273.9 277 56.7
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 3.8e-71 272.3 282 55.3
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 3.8e-71 272.3 285 55.4
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 3.8e-71 272.3 282 54.3
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 6.4e-71 271.6 278 56.1
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 8.4e-71 271.2 312 51.6
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 8.4e-71 271.2 282 55.0
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 1.4e-70 270.4 277 57.0
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 1.4e-70 270.4 279 55.6
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 1.9e-70 270.0 279 55.9
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 2.4e-70 269.6 278 56.5
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 3.2e-70 269.2 282 54.6
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 3.2e-70 269.2 281 54.1
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 9.3e-70 267.7 282 55.0
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 9.3e-70 267.7 279 54.8
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 9.3e-70 267.7 278 56.1
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 1.6e-69 266.9 279 55.2
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 3.5e-69 265.8 282 54.6
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 3.5e-69 265.8 279 54.8
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 1.7e-68 263.5 282 53.9
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 1.7e-68 263.5 282 53.9
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 2.3e-68 263.1 278 54.7
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 2.3e-68 263.1 278 54.7
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 2.3e-68 263.1 278 54.0
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 3.0e-68 262.7 286 52.4
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 3.9e-68 262.3 277 54.9
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 5.1e-68 261.9 279 54.5
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 5.1e-68 261.9 278 54.7
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 6.6e-68 261.5 295 51.9
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 6.6e-68 261.5 247 64.4
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 1.5e-67 260.4 277 54.9
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 5.6e-67 258.5 282 52.5
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 7.3e-67 258.1 277 54.9
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 4.0e-65 252.3 289 52.2
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 9.0e-65 251.1 280 51.8
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 1.1e-62 244.2 165 79.4
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 7.1e-62 241.5 274 52.9
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 4.6e-61 238.8 276 50.7
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 6.0e-61 238.4 293 53.6
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 6.0e-61 238.4 274 51.5
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 7.9e-61 238.0 341 44.9
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 1.8e-60 236.9 374 42.0
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 3.0e-60 236.1 277 50.5
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 3.0e-60 236.1 278 50.7
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 5.1e-60 235.3 276 49.6
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 2.5e-59 233.0 296 47.6
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 5.6e-59 231.9 277 49.5
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 9.6e-59 231.1 277 49.8
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 6.9e-57 224.9 278 46.4
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 2.0e-56 223.4 279 49.1
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 3.4e-56 222.6 238 55.5
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 6.5e-55 218.4 269 49.1
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 2.5e-54 216.5 282 44.7
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 5.5e-54 215.3 262 48.9
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 2.1e-53 213.4 269 48.3
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 6.7e-52 208.4 253 50.6
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.1e-51 207.6 166 65.7
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.1e-51 207.6 166 65.7
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 2.5e-51 206.5 275 46.5
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 2.1e-50 203.4 277 45.1
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 4.8e-50 202.2 271 45.0
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 1.1e-49 201.1 271 44.6
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 2.0e-48 196.8 272 45.2
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 1.7e-47 193.7 166 62.0
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 3.5e-45 186.0 285 40.7
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 4.6e-45 185.7 280 41.4
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 3.9e-44 182.6 117 76.1
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 9.7e-43 177.9 249 47.0
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 5.3e-41 172.2 245 44.5
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 4.5e-40 169.1 247 44.9
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 1.5e-35 154.1 114 70.2
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 9.7e-35 151.4 118 68.6
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 9.7e-35 151.4 116 63.8
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 9.4e-30 134.8 160 53.1
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 6.7e-28 128.6 84 83.3
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 1.5e-27 127.5 77 80.5
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.3e-27 126.3 157 48.4
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.8e-25 120.6 81 76.5
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.6e-24 117.5 108 59.3
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 8.5e-23 111.7 104 66.3
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.5e-22 110.2 177 42.4
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 9.4e-22 108.2 157 45.2
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 4.7e-21 105.9 103 53.4
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 8.8e-20 101.7 267 30.0
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 1.8e-17 94.0 52 94.2
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 2.4e-17 93.6 52 92.3
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 2.4e-17 93.6 52 92.3
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 5.3e-17 92.4 52 92.3
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 1.2e-16 91.3 69 66.7
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 2.7e-16 90.1 52 90.4
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 4.5e-16 89.4 269 29.7
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 1.3e-15 87.8 50 90.0
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 5.0e-15 85.9 59 72.9
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 3.2e-14 83.2 72 56.9
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 3.2e-14 83.2 72 56.9
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 4.2e-14 82.8 71 60.6
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 2.1e-13 80.5 68 60.3
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 3.6e-13 79.7 72 54.2
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 4.7e-13 79.3 72 55.6
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.4e-12 77.8 60 63.3
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 2.3e-12 77.0 264 27.7
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 1.5e-11 74.3 51 72.5
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 2.4e-09 67.0 140 35.0
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 3.5e-08 63.2 80 47.5
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 1.3e-07 61.2 34 91.2
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 2.9e-07 60.1 64 53.1
Gohir.D03G082900 Gossypium hirsutum HOM05D002585 ORTHO05D002917 3.2e-06 56.6 52 53.8


User provided reference genes

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