Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11373 Brassica carinata HOM05D003322 ORTHO05D004228 3.3e-47 191.4 101 100.0
BcaB01g03961 Brassica carinata HOM05D003322 ORTHO05D004228 6.7e-40 167.2 86 98.8
BcaB02g10520 Brassica carinata HOM05D003322 ORTHO05D004228 6.7e-40 167.2 86 98.8
BcaB06g28649 Brassica carinata HOM05D003322 ORTHO05D004228 6.7e-40 167.2 86 98.8
BcaC01g05883 Brassica carinata HOM05D003322 ORTHO05D004228 6.7e-40 167.2 86 98.8
BcaC02g07863 Brassica carinata HOM05D003322 ORTHO05D004228 6.7e-40 167.2 86 98.8
BcaC02g11376 Brassica carinata HOM05D003322 ORTHO05D004228 6.7e-40 167.2 86 98.8
A03p18380 Brassica napus HOM05D003322 ORTHO05D004228 6.7e-40 167.2 86 98.8
A04p25420 Brassica napus HOM05D000074 ORTHO05D000696 6.7e-40 167.2 86 98.8
A05p12580 Brassica napus HOM05D003322 ORTHO05D004228 6.7e-40 167.2 86 98.8
C03p21450 Brassica napus HOM05D003322 ORTHO05D004228 6.7e-40 167.2 86 98.8
C04p16450 Brassica napus HOM05D003322 ORTHO05D004228 6.7e-40 167.2 86 98.8
C04p62560 Brassica napus HOM05D000074 ORTHO05D000696 6.7e-40 167.2 86 98.8
BolC3t14530H Brassica oleracea HOM05D003322 ORTHO05D004228 6.7e-40 167.2 86 98.8
BolC4t23195H Brassica oleracea HOM05D003322 ORTHO05D004228 6.7e-40 167.2 86 98.8
BolC4t27737H Brassica oleracea HOM05D003322 ORTHO05D004228 6.7e-40 167.2 86 98.8
BraA03t11101Z Brassica rapa HOM05D003322 ORTHO05D004228 6.7e-40 167.2 86 98.8
BraA04t18045Z Brassica rapa HOM05D003322 ORTHO05D004228 6.7e-40 167.2 86 98.8
BraA05t20195Z Brassica rapa HOM05D003322 ORTHO05D004228 6.7e-40 167.2 86 98.8
Thhalv10016929m.g Eutrema salsugineum HOM05D003322 ORTHO05D004228 1.9e-39 165.6 86 97.7
Sp4g15380 Schrenkiella parvula HOM05D003322 ORTHO05D004228 4.3e-39 164.5 86 96.5
AL4G28590 Arabidopsis lyrata HOM05D003322 ORTHO05D004228 2.8e-38 161.8 86 94.2
AT2G33040 Arabidopsis thaliana HOM05D003322 ORTHO05D004228 2.8e-38 161.8 86 94.2
Carub.0004s1452 Capsella rubella HOM05D003322 ORTHO05D004228 2.8e-38 161.8 86 94.2
BcaB01g01791 Brassica carinata HOM05D003322 ORTHO05D004228 1.2e-36 156.4 86 93.0
arahy.Tifrunner.gnm1.ann1.0NDH2Q Arachis hypogaea HOM05D003322 ORTHO05D004228 2.5e-34 148.7 86 82.6
Aa31LG5G4180 Aethionema arabicum HOM05D003322 ORTHO05D004228 5.5e-34 147.5 86 82.6
arahy.Tifrunner.gnm1.ann1.54SFA6 Arachis hypogaea HOM05D003322 ORTHO05D004228 9.3e-34 146.7 86 81.4
SGA_v2.0_scaffold28G11757 Striga asiatica HOM05D003322 ORTHO05D004228 3.5e-33 144.8 86 81.4
Cpa.g.sc25.176 Carica papaya HOM05D003322 ORTHO05D004228 1.0e-32 143.3 86 80.2
RcHm_v2.0_Chr7g0183071 Rosa chinensis HOM05D003322 ORTHO05D004228 1.0e-32 143.3 86 79.1
TPR.G24877 Trifolium pratense HOM05D003322 ORTHO05D004228 1.3e-32 142.9 86 79.1
MSTRG.22966 Avicennia marina HOM05D003322 ORTHO05D004228 1.8e-32 142.5 86 80.2
Ciclev10021169m.g Citrus clementina HOM05D003322 ORTHO05D004228 1.8e-32 142.5 86 79.1
Manes.14G085400 Manihot esculenta HOM05D003322 ORTHO05D004228 1.8e-32 142.5 86 77.9
PGR083G0152 Punica granatum HOM05D003322 ORTHO05D004228 2.3e-32 142.1 86 77.9
VMungo1309G2770 Vigna mungo HOM05D003322 ORTHO05D004228 2.3e-32 142.1 86 77.9
CiPaw.11G053100 Carya illinoinensis HOM05D003322 ORTHO05D004228 3.0e-32 141.7 86 80.2
Glyma.06G203200 Glycine max HOM05D003322 ORTHO05D004228 3.0e-32 141.7 86 80.2
CiPaw.11G053200 Carya illinoinensis HOM05D003322 ORTHO05D004228 3.9e-32 141.4 86 80.2
FvH4_5g13860 Fragaria vesca HOM05D003322 ORTHO05D004228 3.9e-32 141.4 86 77.9
MD14G1211800 Malus domestica HOM05D003322 ORTHO05D004228 3.9e-32 141.4 86 79.1
Manes.06G084900 Manihot esculenta HOM05D003322 ORTHO05D004228 3.9e-32 141.4 86 76.7
vmacro17609 Vaccinium macrocarpon HOM05D003322 ORTHO05D004228 3.9e-32 141.4 86 77.9
FAN08G0721 Fragaria x ananassa HOM05D003322 ORTHO05D004228 5.1e-32 141.0 86 77.9
MD06G1202600 Malus domestica HOM05D003322 ORTHO05D004228 5.1e-32 141.0 86 77.9
Nitab4.5_0001485g0170 Nicotiana tabacum HOM05D003322 ORTHO05D004228 5.1e-32 141.0 86 77.9
Nitab4.5_0003660g0050 Nicotiana tabacum HOM05D003322 ORTHO05D004228 5.1e-32 141.0 86 79.1
Nitab4.5_0005072g0050 Nicotiana tabacum HOM05D003322 ORTHO05D004228 5.1e-32 141.0 86 79.1
Prupe.5G204800 Prunus persica HOM05D003322 ORTHO05D004228 5.1e-32 141.0 86 80.2
Rhsim08G0146100 Rhododendron simsii HOM05D003322 ORTHO05D004228 5.1e-32 141.0 86 76.7
MBI11_g00916_MAGBIO Magnolia biondii HOM05D003322 ORTHO05D004228 6.7e-32 140.6 86 76.7
ATR0730G108 Amborella trichopoda HOM05D003322 ORTHO05D004228 8.7e-32 140.2 86 75.6
COL.COLO4_06862 Corchorus olitorius HOM05D003322 ORTHO05D004228 8.7e-32 140.2 86 75.6
FAN18G2096 Fragaria x ananassa HOM05D003322 ORTHO05D004228 8.7e-32 140.2 86 76.7
Lalb_Chr11g0061621 Lupinus albus HOM05D003322 ORTHO05D004228 8.7e-32 140.2 86 77.9
Nn8g40879 Nelumbo nucifera HOM05D003322 ORTHO05D004228 8.7e-32 140.2 86 74.4
CDE02G3519 Ceratophyllum demersum HOM05D003322 ORTHO05D004228 1.1e-31 139.8 86 74.4
FAN13G2646 Fragaria x ananassa HOM05D003322 ORTHO05D004228 1.5e-31 139.4 86 75.6
Gohir.A12G182500 Gossypium hirsutum HOM05D003322 ORTHO05D004228 1.5e-31 139.4 86 77.9
Sc10g0009720 Simmondsia chinensis HOM05D003322 ORTHO05D004228 1.5e-31 139.4 86 77.9
Aqoxy6G02351 Aquilegia oxysepala HOM05D003322 ORTHO05D004228 1.9e-31 139.0 86 75.6
Gohir.A07G068700 Gossypium hirsutum HOM05D003322 ORTHO05D004228 1.9e-31 139.0 86 76.7
Gohir.D12G185600 Gossypium hirsutum HOM05D003322 ORTHO05D004228 1.9e-31 139.0 86 77.9
Gorai.008G199000 Gossypium raimondii HOM05D003322 ORTHO05D004228 1.9e-31 139.0 86 77.9
Aqoxy6G00786 Aquilegia oxysepala HOM05D003322 ORTHO05D004228 2.5e-31 138.7 86 74.4
CDE05G1000 Ceratophyllum demersum HOM05D003322 ORTHO05D004228 2.5e-31 138.7 86 74.4
Duzib068G1237 Durio zibethinus HOM05D003322 ORTHO05D004228 2.5e-31 138.7 86 76.7
Gohir.D07G073200 Gossypium hirsutum HOM05D003322 ORTHO05D004228 2.5e-31 138.7 86 76.7
Gorai.001G077400 Gossypium raimondii HOM05D003322 ORTHO05D004228 2.5e-31 138.7 86 76.7
Lj1g0009894 Lotus japonicus HOM05D003322 ORTHO05D004228 2.5e-31 138.7 86 79.1
Lalb_Chr08g0246391 Lupinus albus HOM05D003322 ORTHO05D004228 2.5e-31 138.7 84 78.6
Peaxi162Scf00702g00035 Petunia axillaris HOM05D003322 ORTHO05D004228 2.5e-31 138.7 86 76.7
MBI13_g34044_MAGBIO Magnolia biondii HOM05D003322 ORTHO05D004228 3.3e-31 138.3 86 75.6
Peaxi162Scf00013g00630 Petunia axillaris HOM05D003322 ORTHO05D004228 3.3e-31 138.3 86 75.6
Thecc.03G101400 Theobroma cacao HOM05D003322 ORTHO05D004228 3.3e-31 138.3 86 77.9
Glyma.04G162800 Glycine max HOM05D003322 ORTHO05D004228 4.3e-31 137.9 86 77.9
THA.LOC104826136 Tarenaya hassleriana HOM05D003322 ORTHO05D004228 4.3e-31 137.9 86 74.4
Atru.chr9.581 Acer truncatum HOM05D003322 ORTHO05D004228 5.7e-31 137.5 86 74.4
Ah.11g047800 Amaranthus hybridus HOM05D003322 ORTHO05D004228 5.7e-31 137.5 86 74.4
CAN.G1228.27 Capsicum annuum HOM05D003322 ORTHO05D004228 5.7e-31 137.5 86 76.7
Haze_07721 Corylus avellana HOM05D003322 ORTHO05D004228 5.7e-31 137.5 86 75.6
Haze_07723 Corylus avellana HOM05D003322 ORTHO05D004228 5.7e-31 137.5 86 75.6
Phvul.009G191400 Phaseolus vulgaris HOM05D003322 ORTHO05D004228 5.7e-31 137.5 86 77.9
Psat0s2642g0080 Pisum sativum HOM05D003322 ORTHO05D004228 5.7e-31 137.5 86 76.7
Solyc03g115110.4 Solanum lycopersicum HOM05D003322 ORTHO05D004228 5.7e-31 137.5 86 76.7
Sopen03g034180 Solanum pennellii HOM05D003322 ORTHO05D004228 5.7e-31 137.5 86 76.7
PGSC0003DMG400024638 Solanum tuberosum HOM05D003322 ORTHO05D004228 5.7e-31 137.5 86 76.7
TWI81G0037 Tripterygium wilfordii HOM05D003322 ORTHO05D004228 5.7e-31 137.5 86 73.3
Dinv33826 Davidia involucrata HOM05D003322 ORTHO05D004228 7.4e-31 137.1 86 73.3
Duzib205G0199 Durio zibethinus HOM05D003322 ORTHO05D004228 7.4e-31 137.1 86 75.6
ECA233G0034 Erigeron canadensis HOM05D003322 ORTHO05D004228 7.4e-31 137.1 86 76.7
Migut.D01664 Erythranthe guttata HOM05D003322 ORTHO05D004228 7.4e-31 137.1 86 75.6
TWI60G0212 Tripterygium wilfordii HOM05D003322 ORTHO05D004228 7.4e-31 137.1 86 73.3
HPP92_009478 Vanilla planifolia HOM05D003322 ORTHO05D004228 7.4e-31 137.1 86 74.4
Sc12g0006660 Simmondsia chinensis HOM05D003322 ORTHO05D004228 9.7e-31 136.7 86 74.4
TAR629G0740 Trochodendron aralioides HOM05D003322 ORTHO05D004228 9.7e-31 136.7 99 67.7
Medtr4g129790 Medicago truncatula HOM05D003322 ORTHO05D004228 1.3e-30 136.3 86 74.4
unitig_46.g18457 Utricularia gibba HOM05D003322 ORTHO05D004228 1.3e-30 136.3 86 72.1
CANSAT80G2201 Cannabis sativa HOM05D003322 ORTHO05D004228 1.6e-30 136.0 86 72.1
SGA_v2.0_scaffold25G10961 Striga asiatica HOM05D003322 ORTHO05D004228 1.6e-30 136.0 86 73.3
THA.LOC104801002 Tarenaya hassleriana HOM05D003322 ORTHO05D004228 1.6e-30 136.0 86 73.3
Cc03_g13130 Coffea canephora HOM05D003322 ORTHO05D004228 2.2e-30 135.6 86 74.4
Gohir.D03G096600 Gossypium hirsutum HOM05D003322 ORTHO05D004228 2.2e-30 135.6 86 75.6
Gorai.003G101200 Gossypium raimondii HOM05D003322 ORTHO05D004228 2.2e-30 135.6 86 75.6
Lsat_1_v5_gn_8_121700 Lactuca sativa HOM05D003322 ORTHO05D004228 2.2e-30 135.6 86 77.9
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 2.8e-30 135.2 86 72.1
CSS0041329 Camellia sinensis var. sinensis HOM05D003322 ORTHO05D004228 2.8e-30 135.2 86 72.1
MELO3C002027.2 Cucumis melo HOM05D003322 ORTHO05D004228 2.8e-30 135.2 86 73.3
HanXRQChr12g0374621 Helianthus annuus HOM05D003322 ORTHO05D004228 2.8e-30 135.2 86 77.9
PSO017G5003 Papaver somniferum HOM05D003322 ORTHO05D004228 3.7e-30 134.8 86 75.6
PSO478G0061 Papaver somniferum HOM05D003322 ORTHO05D004228 3.7e-30 134.8 86 75.6
AUR62021565 Chenopodium quinoa HOM05D003322 ORTHO05D004228 4.8e-30 134.4 86 74.4
HanXRQChr12g0374611 Helianthus annuus HOM05D003322 ORTHO05D004228 4.8e-30 134.4 86 77.9
Sed0007546 Sechium edule HOM05D003322 ORTHO05D004228 4.8e-30 134.4 86 74.4
GSVIVG01007868001 Vitis vinifera HOM05D003322 ORTHO05D004228 4.8e-30 134.4 86 70.9
Cfa019330 Carpinus fangiana HOM05D003322 ORTHO05D004228 8.2e-30 133.7 86 72.1
AUR62008524 Chenopodium quinoa HOM05D003322 ORTHO05D004228 8.2e-30 133.7 86 73.3
ClCG04G011820 Citrullus lanatus HOM05D003322 ORTHO05D004228 8.2e-30 133.7 86 74.4
SalBow5G1734 Salvia bowleyana HOM05D003322 ORTHO05D004228 8.2e-30 133.7 85 74.1
Oeu014404.1 Olea europaea HOM05D003322 ORTHO05D004228 1.1e-29 133.3 86 74.4
Oeu061163.1 Olea europaea HOM05D003322 ORTHO05D004228 1.1e-29 133.3 86 75.6
Potri.012G066100 Populus trichocarpa HOM05D003322 ORTHO05D004228 1.4e-29 132.9 86 70.9
EL10Ac5g11127 Beta vulgaris HOM05D003322 ORTHO05D004228 1.8e-29 132.5 86 73.3
Gohir.A03G070000 Gossypium hirsutum HOM05D003322 ORTHO05D004228 1.8e-29 132.5 86 74.4
QL10p019459 Quercus lobata HOM05D003322 ORTHO05D004228 1.8e-29 132.5 84 73.8
Lj5A435G20 Lonicera japonica HOM05D003322 ORTHO05D004228 2.4e-29 132.1 86 73.3
Zm00001eb008610 Zea mays HOM05D003322 ORTHO05D004228 4.1e-29 131.3 86 66.3
Haze_14434 Corylus avellana HOM05D003322 ORTHO05D004228 5.3e-29 131.0 86 69.8
Potri.015G057700 Populus trichocarpa HOM05D003322 ORTHO05D004228 5.3e-29 131.0 86 72.1
Dinv22783 Davidia involucrata HOM05D003322 ORTHO05D004228 6.9e-29 130.6 86 72.1
SEGI_07328 Sequoiadendron giganteum HOM05D003322 ORTHO05D004228 6.9e-29 130.6 84 70.2
Zm00001eb400220 Zea mays HOM05D003322 ORTHO05D004228 6.9e-29 130.6 86 67.4
Psat1g081800 Pisum sativum HOM05D003322 ORTHO05D004228 9.0e-29 130.2 83 74.7
Sabra15G0083800 Salix brachista HOM05D003322 ORTHO05D004228 9.0e-29 130.2 86 70.9
CsaV3_1G005960 Cucumis sativus L. HOM05D003322 ORTHO05D004228 1.2e-28 129.8 86 72.1
Eucgr.B00589 Eucalyptus grandis HOM05D003322 ORTHO05D004228 2.6e-28 128.6 87 72.4
Hma1.2p1_0060F.1_g033120 Hydrangea macrophylla HOM05D003322 ORTHO05D004228 4.5e-28 127.9 86 70.9
Lj5A102G94 Lonicera japonica HOM05D003322 ORTHO05D004228 4.5e-28 127.9 86 70.9
Os10g0320400 Oryza sativa ssp. japonica HOM05D003322 ORTHO05D004228 5.9e-28 127.5 86 67.4
Hund09909 Selenicereus undatus HOM05D003322 ORTHO05D004228 5.9e-28 127.5 86 69.8
SHI27070 Sapria himalayana HOM05D003322 ORTHO05D004228 1.7e-27 125.9 86 67.4
TAR622G0209 Trochodendron aralioides HOM05D003322 ORTHO05D004228 2.9e-27 125.2 77 72.7
DCAR_002146 Daucus carota HOM05D003322 ORTHO05D004228 7.2e-26 120.6 86 70.9
DCAR_023345 Daucus carota HOM05D003322 ORTHO05D004228 7.2e-26 120.6 86 70.9
CARHR126980 Cardamine hirsuta HOM05D003322 ORTHO05D004228 2.7e-25 118.6 62 95.2
Dinv17411 Davidia involucrata HOM05D003322 ORTHO05D004228 3.6e-25 118.2 84 67.9
Actinidia18991 Actinidia chinensis HOM05D003322 ORTHO05D004228 1.0e-24 116.7 81 66.7
Nn4g23423 Nelumbo nucifera HOM05D003322 ORTHO05D004228 1.1e-23 113.2 74 71.6
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 7.4e-23 110.5 66 78.8
QL10p019482 Quercus lobata HOM05D003322 ORTHO05D000004 1.8e-21 105.9 71 76.1
Duzib084G1273 Durio zibethinus HOM05D003322 ORTHO05D004228 4.1e-21 104.8 83 65.1
Ca_03282_v3 Cicer arietinum L. HOM05D000010 ORTHO05D000063 6.9e-21 104.0 61 77.0
Lsat_1_v5_gn_8_60340 Lactuca sativa HOM05D003322 ORTHO05D004228 6.9e-21 104.0 66 80.3
Gohir.D06G107050 Gossypium hirsutum HOM05D003322 ORTHO05D004228 9.1e-21 103.6 61 80.3
Gorai.010G121700 Gossypium raimondii HOM05D003322 ORTHO05D004228 1.7e-19 99.4 61 77.0
Gorai.004G104400 Gossypium raimondii HOM05D003322 ORTHO05D004228 5.0e-19 97.8 60 78.3
Hund02587 Selenicereus undatus HOM05D003322 ORTHO05D004228 8.5e-19 97.1 68 67.6
SMO367G0098 Selaginella moellendorffii HOM05D003322 ORTHO05D004228 2.7e-17 92.0 84 58.3
AagrBONN_evm.TU.Sc2ySwM_117.1998 Anthoceros agrestis HOM05D003322 ORTHO05D004228 7.9e-17 90.5 84 53.6
TAR374G0254 Trochodendron aralioides HOM05D003322 ORTHO05D004228 1.0e-16 90.1 61 67.2
CBR_g4476 Chara braunii HOM05D003322 ORTHO05D004228 1.4e-16 89.7 95 47.4
Mapoly0062s0010 Marchantia polymorpha HOM05D003322 ORTHO05D004228 1.1e-15 86.7 84 47.6
Mapoly0062s0085 Marchantia polymorpha HOM05D003322 ORTHO05D004228 1.1e-15 86.7 84 47.6
Pp3c21_11700 Physcomitrium patens HOM05D003322 ORTHO05D004228 5.7e-15 84.3 83 48.2
Pp3c18_8580 Physcomitrium patens HOM05D003322 ORTHO05D004228 1.7e-14 82.8 83 48.2
Pp3c19_11630 Physcomitrium patens HOM05D003322 ORTHO05D004228 3.7e-14 81.6 83 48.2
HanXRQChr09g0248401 Helianthus annuus HOM05D003322 ORTHO05D004228 7.7e-12 73.9 76 53.9
Pp3c19_5760 Physcomitrium patens HOM05D003322 ORTHO05D004228 1.9e-10 69.3 83 43.4
BcaC02g11374 Brassica carinata HOM05D003322 ORTHO05D039468 2.5e-10 68.9 73 61.6
C06p50490 Brassica napus HOM05D003322 ORTHO05D021835 1.6e-09 66.2 65 60.0
C06p50480 Brassica napus HOM05D003322 ORTHO05D021835 4.7e-09 64.7 65 58.5
BolC6t40074H Brassica oleracea HOM05D003322 ORTHO05D021835 4.7e-09 64.7 65 58.5
Cre15.g635850 Chlamydomonas reinhardtii HOM05D003322 ORTHO05D004228 1.1e-07 60.1 76 42.1
HanXRQChr09g0246001 Helianthus annuus HOM05D003322 ORTHO05D004228 9.7e-07 57.0 63 50.8
HanXRQChr09g0248501 Helianthus annuus HOM05D003322 ORTHO05D004228 9.7e-07 57.0 63 50.8
HanXRQChr09g0248941 Helianthus annuus HOM05D003322 ORTHO05D004228 9.7e-07 57.0 63 50.8
MCO01G597 Micromonas commoda HOM05D003322 ORTHO05D004228 4.8e-06 54.7 74 43.2


User provided reference genes

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