Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 0.0e+00 1258.8 668 100.0
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 0.0e+00 1257.3 668 99.9
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 0.0e+00 1203.0 675 96.0
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 0.0e+00 1195.3 671 95.2
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 0.0e+00 1190.3 671 94.5
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 0.0e+00 1081.2 691 82.9
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 4.7e-307 1057.4 693 80.1
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 2.9e-301 1038.1 693 82.1
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 6.8e-298 1026.9 691 79.7
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 6.3e-296 1020.4 691 79.2
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 9.1e-295 1016.5 692 78.9
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 2.7e-294 1015.0 693 79.2
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 1.0e-293 1013.1 701 78.0
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 5.2e-290 1000.7 696 77.7
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 1.6e-286 989.2 699 76.4
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 5.6e-284 980.7 698 75.6
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 2.2e-272 942.2 688 72.7
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 4.4e-257 891.3 664 74.4
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 1.8e-250 869.4 692 65.5
BcaB02g10511 Brassica carinata HOM05D003996 ORTHO05D004665 2.1e-243 845.9 490 91.0
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 4.9e-240 834.7 693 64.2
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 4.1e-210 735.3 660 66.5
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 1.6e-206 723.4 693 55.7
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 5.7e-204 714.9 679 56.1
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 6.3e-203 711.4 696 55.0
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 3.1e-202 709.1 691 57.0
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 5.3e-202 708.4 690 54.9
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.7e-200 703.4 691 57.3
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 6.5e-200 701.4 691 54.4
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 8.5e-200 701.0 696 55.3
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 2.1e-198 696.4 652 56.3
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 2.7e-198 696.0 699 56.5
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 6.1e-198 694.9 693 53.5
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 1.5e-196 690.3 682 54.7
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 2.6e-196 689.5 693 55.0
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 1.7e-195 686.8 682 58.1
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 1.1e-194 684.1 682 54.8
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 3.1e-194 682.6 697 53.7
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 2.0e-193 679.9 693 56.4
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 2.5e-191 672.9 696 52.3
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 2.8e-187 659.4 651 57.3
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 3.1e-186 656.0 668 56.3
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 4.5e-185 652.1 787 47.4
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 6.5e-184 648.3 658 54.6
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 4.2e-183 645.6 686 51.5
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 2.7e-182 642.9 692 51.7
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 3.6e-182 642.5 695 51.4
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 4.7e-182 642.1 695 51.4
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 5.2e-181 638.6 681 52.3
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 9.8e-180 634.4 741 48.6
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 1.7e-179 633.6 624 54.8
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 2.4e-178 629.8 672 50.7
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 3.1e-178 629.4 687 50.2
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 1.6e-177 627.1 692 50.0
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 1.6e-177 627.1 651 54.1
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 4.5e-177 625.5 697 53.9
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 4.5e-177 625.5 685 49.5
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 4.5e-177 625.5 671 50.8
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 1.0e-176 624.4 666 54.5
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 1.3e-176 624.0 666 51.8
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 5.0e-176 622.1 686 50.4
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 6.6e-176 621.7 658 50.9
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 4.2e-175 619.0 660 51.5
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 4.2e-175 619.0 695 52.9
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 3.0e-173 612.8 633 52.0
Manes.13G066300 Manihot esculenta HOM05D003996 ORTHO05D004665 6.8e-173 611.7 607 53.0
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 2.0e-172 610.1 703 47.5
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 3.4e-172 609.4 682 48.2
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 2.2e-171 606.7 648 51.4
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 4.9e-171 605.5 668 49.9
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 1.1e-170 604.4 712 47.9
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 2.4e-170 603.2 648 53.1
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 5.4e-170 602.1 703 46.7
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 5.9e-169 598.6 679 49.5
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 2.3e-168 596.7 716 47.3
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 2.3e-168 596.7 669 52.5
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 5.0e-168 595.5 741 46.4
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 5.0e-168 595.5 663 49.9
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 6.6e-168 595.1 717 47.6
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.5e-167 594.0 716 47.1
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 9.5e-167 591.3 667 48.3
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 3.6e-166 589.3 658 49.1
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 6.1e-166 588.6 683 50.2
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 1.8e-165 587.0 660 51.7
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 5.2e-165 585.5 739 47.1
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 6.8e-165 585.1 731 46.6
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 1.2e-164 584.3 686 47.2
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 2.0e-164 583.6 702 46.9
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 4.4e-164 582.4 660 47.9
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.4e-162 577.4 659 51.7
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 1.2e-161 574.3 663 47.5
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 3.5e-161 572.8 663 47.2
Actinidia10801 Actinidia chinensis HOM05D003996 ORTHO05D004665 1.0e-160 571.2 625 51.0
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 1.0e-160 571.2 647 47.8
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 1.0e-160 571.2 716 46.4
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 5.0e-160 568.9 645 49.1
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 5.6e-159 565.5 674 49.3
Lj1C780G17 Lonicera japonica HOM05D003996 ORTHO05D004665 7.3e-159 565.1 580 56.2
Haze_12770 Corylus avellana HOM05D003996 ORTHO05D004665 6.2e-158 562.0 562 56.4
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 8.0e-158 561.6 685 46.1
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 2.3e-157 560.1 655 47.2
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 6.8e-157 558.5 661 47.4
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 1.2e-156 557.8 661 47.2
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 5.8e-156 555.4 662 47.3
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 2.9e-155 553.1 622 51.4
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 1.1e-154 551.2 637 47.7
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 1.1e-151 541.2 678 44.4
Oeu010926.4 Olea europaea HOM05D003996 ORTHO05D004665 2.5e-151 540.0 608 48.7
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 1.2e-150 537.7 678 45.7
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 4.7e-150 535.8 659 46.9
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 3.1e-149 533.1 672 45.2
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 4.0e-149 532.7 686 45.8
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 1.5e-148 530.8 684 44.9
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 3.4e-148 529.6 643 47.0
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 7.5e-148 528.5 633 47.4
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 9.9e-148 528.1 636 47.6
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 1.4e-146 524.2 696 45.5
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 2.4e-146 523.5 648 44.3
Sed0016081 Sechium edule HOM05D003996 ORTHO05D004665 3.2e-146 523.1 611 47.6
CSS0033567 Camellia sinensis var. sinensis HOM05D003996 ORTHO05D004665 2.1e-145 520.4 556 51.6
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 4.6e-145 519.2 673 44.3
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 6.0e-145 518.8 634 47.0
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 1.3e-144 517.7 669 45.4
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 5.1e-144 515.8 672 43.6
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 5.2e-141 505.8 668 46.3
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 6.4e-139 498.8 657 47.9
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 6.4e-139 498.8 648 44.8
CiPaw.04G110600 Carya illinoinensis HOM05D003996 ORTHO05D004665 3.5e-137 493.0 487 52.6
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 3.3e-135 486.5 635 42.8
Sc06g0009640 Simmondsia chinensis HOM05D003996 ORTHO05D004665 2.8e-134 483.4 491 52.3
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 1.8e-133 480.7 667 43.3
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 2.9e-131 473.4 679 45.4
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 2.4e-130 470.3 468 54.9
COL.COLO4_21871 Corchorus olitorius HOM05D003996 ORTHO05D004665 1.2e-129 468.0 422 60.7
unitig_26.g9924 Utricularia gibba HOM05D003996 ORTHO05D004665 5.1e-120 436.0 499 47.7
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 7.1e-114 415.6 744 37.6
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 3.4e-108 396.7 638 37.9
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 1.1e-106 391.7 640 36.7
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 2.5e-106 390.6 624 38.6
CANSAT01G0074 Cannabis sativa HOM05D003996 ORTHO05D004665 2.7e-105 387.1 632 38.0
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.0e-104 385.2 666 36.3
CiPaw.03G155400 Carya illinoinensis HOM05D003996 ORTHO05D004665 3.3e-103 380.2 404 50.7
GSVIVG01003286001 Vitis vinifera HOM05D003996 ORTHO05D004665 3.9e-96 356.7 616 37.5
EL10Ac7g17863 Beta vulgaris HOM05D003996 ORTHO05D004665 6.7e-96 355.9 639 36.2
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 1.2e-92 345.1 731 33.7
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 1.5e-92 344.7 747 34.5
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 3.8e-91 340.1 641 35.3
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 6.1e-89 332.8 794 31.4
Zm00001eb297890 Zea mays HOM05D003996 ORTHO05D004665 2.2e-86 324.3 611 37.8
SMO361G0133 Selaginella moellendorffii HOM05D003996 ORTHO05D004665 3.7e-86 323.6 654 36.9
CANSAT01G3237 Cannabis sativa HOM05D003996 ORTHO05D004665 1.6e-81 308.1 483 38.9
HPP92_011782 Vanilla planifolia HOM05D003996 ORTHO05D004665 2.2e-78 297.7 351 44.4
Manes.13G046600 Manihot esculenta HOM05D003996 ORTHO05D004665 6.3e-78 296.2 570 38.6
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 1.2e-76 292.0 737 30.4
Ah.08g214450 Amaranthus hybridus HOM05D003996 ORTHO05D004665 8.8e-72 275.8 490 36.1
Hund05567 Selenicereus undatus HOM05D003996 ORTHO05D004665 2.4e-69 267.7 496 35.5
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 8.3e-62 242.7 319 44.8
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.1e-61 242.3 222 56.3
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 1.4e-56 225.3 344 38.7
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 5.7e-55 219.9 215 55.3
Actinidia03595 Actinidia chinensis HOM05D003996 ORTHO05D004665 2.8e-25 121.3 108 57.4
Actinidia03596 Actinidia chinensis HOM05D003996 ORTHO05D004665 8.1e-25 119.8 262 31.3
Actinidia03594 Actinidia chinensis HOM05D003996 ORTHO05D004665 5.2e-24 117.1 92 58.7
C09p40870 Brassica napus HOM05D003996 ORTHO05D004665 6.8e-24 116.7 69 73.9
Thecc.01G223400 Theobroma cacao HOM05D003996 ORTHO05D004665 1.3e-19 102.4 183 34.4
CiPaw.04G110700 Carya illinoinensis HOM05D003996 ORTHO05D004665 3.1e-16 91.3 65 63.1
Cre12.g513852 Chlamydomonas reinhardtii HOM05D003996 ORTHO05D004665 3.2e-13 81.3 144 38.9
MCO15G069 Micromonas commoda HOM05D003996 ORTHO05D004665 1.0e-11 76.3 121 40.5
Ah.08g214440 Amaranthus hybridus HOM05D003996 ORTHO05D004665 2.1e-09 68.6 60 53.3
Os05g0597400 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 1.8e-08 65.5 54 55.6
DCAR_019433 Daucus carota HOM05D003996 ORTHO05D004665 5.3e-08 63.9 54 59.3
Hund15378 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.2e-07 62.8 109 36.7


User provided reference genes

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