Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 2.3e-72 275.4 131 100.0
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 3.9e-16 88.6 110 46.4
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 1.6e-14 83.2 150 36.7
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 3.7e-14 82.0 149 37.6
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 3.7e-14 82.0 149 37.6
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 3.7e-14 82.0 149 37.6
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 3.7e-14 82.0 149 37.6
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 3.7e-14 82.0 149 37.6
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 3.7e-14 82.0 149 37.6
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 3.7e-14 82.0 149 37.6
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 4.8e-14 81.6 149 36.9
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 4.8e-14 81.6 149 36.9
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 4.8e-14 81.6 149 36.9
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 6.3e-14 81.3 149 35.6
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 1.1e-13 80.5 141 38.3
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 1.1e-13 80.5 149 36.2
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 1.4e-13 80.1 141 37.6
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 1.4e-13 80.1 149 36.2
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 1.4e-13 80.1 149 36.2
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 1.4e-13 80.1 149 36.2
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 1.4e-13 80.1 149 36.2
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 1.4e-13 80.1 149 36.2
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 1.4e-13 80.1 149 36.2
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 1.4e-13 80.1 149 36.2
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 1.4e-13 80.1 141 37.6
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 1.4e-13 80.1 141 37.6
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 1.4e-13 80.1 141 37.6
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 1.4e-13 80.1 141 37.6
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 1.4e-13 80.1 141 37.6
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 1.4e-13 80.1 141 37.6
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 1.4e-13 80.1 141 37.6
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 1.4e-13 80.1 141 37.6
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 1.4e-13 80.1 141 37.6
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 1.4e-13 80.1 141 37.6
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 1.4e-13 80.1 149 36.2
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 1.4e-13 80.1 141 37.6
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 1.4e-13 80.1 141 37.6
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 1.4e-13 80.1 141 37.6
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 1.8e-13 79.7 141 36.9
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 2.4e-13 79.3 141 37.6
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 2.4e-13 79.3 141 36.2
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 2.4e-13 79.3 141 36.9
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 2.4e-13 79.3 141 37.6
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 2.4e-13 79.3 141 37.6
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 3.1e-13 79.0 141 36.9
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 3.1e-13 79.0 141 36.9
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 3.1e-13 79.0 141 36.9
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 3.1e-13 79.0 141 36.9
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 3.1e-13 79.0 141 36.9
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 3.1e-13 79.0 141 36.9
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 3.1e-13 79.0 141 36.9
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 3.1e-13 79.0 141 36.9
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 3.1e-13 79.0 141 36.9
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 3.1e-13 79.0 141 36.9
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 3.1e-13 79.0 141 36.9
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 3.1e-13 79.0 141 36.9
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 3.1e-13 79.0 141 36.9
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 3.1e-13 79.0 141 36.9
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 3.1e-13 79.0 141 36.9
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 3.1e-13 79.0 141 36.9
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 3.1e-13 79.0 141 36.9
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 3.1e-13 79.0 141 36.9
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 3.1e-13 79.0 141 36.9
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 3.1e-13 79.0 141 36.9
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 3.1e-13 79.0 141 36.9
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 4.1e-13 78.6 147 36.1
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 4.1e-13 78.6 141 36.9
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 4.1e-13 78.6 141 36.9
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 4.1e-13 78.6 141 36.9
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 4.1e-13 78.6 141 36.9
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 4.1e-13 78.6 141 36.9
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 5.3e-13 78.2 141 36.9
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 5.3e-13 78.2 141 36.2
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 5.3e-13 78.2 141 36.2
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 5.3e-13 78.2 141 35.5
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 5.3e-13 78.2 141 36.2
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 5.3e-13 78.2 140 36.4
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 5.3e-13 78.2 141 36.2
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 5.3e-13 78.2 141 36.2
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 5.3e-13 78.2 141 36.2
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 6.9e-13 77.8 141 36.2
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 6.9e-13 77.8 141 36.9
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 6.9e-13 77.8 141 36.2
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 6.9e-13 77.8 141 36.2
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 6.9e-13 77.8 142 35.9
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 6.9e-13 77.8 141 36.2
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 9.0e-13 77.4 141 36.2
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 9.0e-13 77.4 146 36.3
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 9.0e-13 77.4 141 36.9
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 9.0e-13 77.4 141 36.9
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 9.0e-13 77.4 141 36.2
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 9.0e-13 77.4 141 36.2
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 9.0e-13 77.4 141 36.2
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 9.0e-13 77.4 141 36.2
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 9.0e-13 77.4 141 36.9
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 9.0e-13 77.4 141 36.2
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 9.0e-13 77.4 141 36.2
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 9.0e-13 77.4 148 35.1
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 9.0e-13 77.4 141 35.5
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 1.2e-12 77.0 141 36.2
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.2e-12 77.0 141 35.5
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 1.5e-12 76.6 141 36.2
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 1.5e-12 76.6 141 35.5
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 1.5e-12 76.6 141 36.2
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 2.0e-12 76.3 141 36.2
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 2.0e-12 76.3 150 34.7
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 2.0e-12 76.3 141 35.5
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 2.6e-12 75.9 141 34.8
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 3.4e-12 75.5 142 37.3
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 3.4e-12 75.5 146 34.2
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 3.4e-12 75.5 142 37.3
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 4.5e-12 75.1 141 35.5
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 4.5e-12 75.1 141 35.5
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 4.5e-12 75.1 141 36.2
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 5.9e-12 74.7 141 34.8
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 1.0e-11 73.9 142 36.6
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 1.0e-11 73.9 141 34.8
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 1.0e-11 73.9 141 34.8
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 1.0e-11 73.9 142 36.6
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 1.7e-11 73.2 148 33.8
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 3.8e-11 72.0 141 34.8
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 3.8e-11 72.0 141 34.0
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 6.5e-11 71.2 141 33.3
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 8.4e-11 70.9 141 36.2
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 1.1e-10 70.5 151 32.5
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 1.4e-10 70.1 143 33.6
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 3.2e-10 68.9 143 32.9
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 4.2e-10 68.6 142 33.1
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 5.5e-10 68.2 133 34.6
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 2.1e-09 66.2 143 31.5
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 2.7e-09 65.9 144 31.9
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 6.1e-09 64.7 141 31.9
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 7.9e-09 64.3 37 81.1
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 1.0e-08 63.9 37 81.1
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 1.0e-08 63.9 37 81.1
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 1.8e-08 63.2 37 75.7
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 1.8e-08 63.2 29 96.6
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 2.3e-08 62.8 36 80.6
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 2.3e-08 62.8 29 93.1
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 8.7e-08 60.8 29 89.7
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 3.3e-07 58.9 36 75.0
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 3.3e-07 58.9 29 82.8
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 5.7e-07 58.2 29 86.2
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 2.8e-06 55.8 31 74.2
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 4.8e-06 55.1 29 79.3


User provided reference genes

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