Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 6.9e-42 173.7 98 100.0
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 6.9e-42 173.7 98 100.0
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 6.9e-42 173.7 98 100.0
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 5.9e-41 170.6 98 98.0
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 5.9e-41 170.6 98 98.0
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 6.1e-30 134.0 99 77.8
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 1.5e-25 119.4 76 85.5
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 2.6e-25 118.6 96 71.9
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 2.9e-24 115.2 74 83.8
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 8.5e-24 113.6 76 78.9
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 6.1e-22 107.5 86 73.3
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 4.0e-21 104.8 81 71.6
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 6.7e-21 104.0 77 77.9
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 7.4e-20 100.5 69 78.3
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 1.3e-19 99.8 84 71.4
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 1.8e-18 95.9 81 71.6
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 3.1e-18 95.1 84 69.0
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 5.3e-18 94.4 84 69.0
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 5.3e-18 94.4 84 69.0
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 5.3e-18 94.4 84 69.0
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 7.0e-18 94.0 77 74.0
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 7.0e-18 94.0 85 68.2
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 7.0e-18 94.0 91 56.0
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 1.2e-17 93.2 77 71.4
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 3.5e-17 91.7 95 56.8
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.9e-16 88.6 86 59.3
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 1.9e-15 85.9 88 56.8
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 3.2e-15 85.1 78 65.4
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 7.2e-15 84.0 78 60.3
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 9.4e-15 83.6 90 56.7
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 1.6e-14 82.8 74 62.2
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 2.1e-14 82.4 85 57.6
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 2.7e-14 82.0 84 59.5
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.7e-14 82.0 86 54.7
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 4.7e-14 81.3 67 67.2
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 4.7e-14 81.3 81 56.8
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 4.7e-14 81.3 74 63.5
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 6.1e-14 80.9 74 64.9
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 6.1e-14 80.9 86 57.0
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.8e-13 79.3 74 63.5
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 1.8e-13 79.3 77 64.9
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 1.8e-13 79.3 73 60.3
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 1.8e-13 79.3 73 64.4
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 2.3e-13 79.0 72 61.1
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 2.3e-13 79.0 72 63.9
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 3.0e-13 78.6 74 60.8
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 4.0e-13 78.2 75 60.0
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 4.0e-13 78.2 86 58.1
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 5.2e-13 77.8 72 65.3
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 5.2e-13 77.8 83 56.6
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 6.8e-13 77.4 72 63.9
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 6.8e-13 77.4 88 52.3
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 6.8e-13 77.4 98 53.1
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 6.8e-13 77.4 72 59.7
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 6.8e-13 77.4 72 62.5
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 6.8e-13 77.4 67 65.7
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 8.8e-13 77.0 73 60.3
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 8.8e-13 77.0 73 60.3
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 8.8e-13 77.0 90 55.6
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 8.8e-13 77.0 80 56.2
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 8.8e-13 77.0 73 61.6
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 1.2e-12 76.6 76 65.8
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 1.2e-12 76.6 85 57.6
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 1.2e-12 76.6 79 58.2
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 1.2e-12 76.6 66 68.2
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 1.2e-12 76.6 66 68.2
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 1.5e-12 76.3 78 57.7
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 1.5e-12 76.3 66 66.7
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 2.0e-12 75.9 84 56.0
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 2.0e-12 75.9 74 56.8
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 2.6e-12 75.5 72 61.1
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 2.6e-12 75.5 79 59.5
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 2.6e-12 75.5 75 57.3
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 3.4e-12 75.1 71 62.0
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 4.4e-12 74.7 84 56.0
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 4.4e-12 74.7 93 55.9
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 4.4e-12 74.7 78 57.7
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 4.4e-12 74.7 86 53.5
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 4.4e-12 74.7 72 59.7
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 5.7e-12 74.3 78 57.7
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 5.7e-12 74.3 89 55.1
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 5.7e-12 74.3 74 55.4
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 7.5e-12 73.9 66 63.6
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 7.5e-12 73.9 79 58.2
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 7.5e-12 73.9 72 59.7
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 9.8e-12 73.6 77 59.7
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 9.8e-12 73.6 80 55.0
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 9.8e-12 73.6 79 58.2
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.3e-11 73.2 78 56.4
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.3e-11 73.2 78 56.4
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 1.3e-11 73.2 90 54.4
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 1.3e-11 73.2 75 56.0
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.3e-11 73.2 72 58.3
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 1.7e-11 72.8 86 54.7
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 1.7e-11 72.8 75 57.3
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.7e-11 72.8 79 54.4
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 1.7e-11 72.8 79 58.2
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 1.7e-11 72.8 67 61.2
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 2.2e-11 72.4 79 54.4
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 3.7e-11 71.6 70 55.7
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 3.7e-11 71.6 70 58.6
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 6.3e-11 70.9 78 55.1
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 1.1e-10 70.1 88 48.9
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 1.8e-10 69.3 81 54.3
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 3.1e-10 68.6 69 58.0
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 4.1e-10 68.2 82 56.1
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 4.1e-10 68.2 80 52.5
A10p04340 Brassica napus HOM05D000875 ORTHO05D000684 7.0e-10 67.4 53 71.7
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 7.0e-10 67.4 70 57.1
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.2e-09 66.6 89 50.6
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 1.2e-09 66.6 71 53.5
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 2.0e-09 65.9 62 56.5
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 2.7e-09 65.5 81 51.9
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 2.7e-09 65.5 65 58.5
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 3.5e-09 65.1 58 63.8
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 3.5e-09 65.1 59 62.7
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 3.5e-09 65.1 71 54.9
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 4.5e-09 64.7 72 54.2
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 4.5e-09 64.7 73 52.1
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 4.5e-09 64.7 66 57.6
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 4.5e-09 64.7 80 55.0
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 7.7e-09 63.9 75 57.3
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 1.7e-08 62.8 63 55.6
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.2e-08 62.4 61 60.7
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 2.2e-08 62.4 79 51.9
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 5.0e-08 61.2 89 48.3
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 5.0e-08 61.2 64 60.9
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 6.5e-08 60.8 81 48.1
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 8.5e-08 60.5 69 53.6
HPP92_023476 Vanilla planifolia HOM05D004722 ORTHO05D005453 8.5e-08 60.5 75 50.7
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 1.5e-07 59.7 72 50.0
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 1.9e-07 59.3 81 48.1
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 1.9e-07 59.3 87 49.4
HPP92_023456 Vanilla planifolia HOM05D004722 ORTHO05D005453 2.5e-07 58.9 75 49.3
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 3.2e-07 58.5 67 53.7
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 4.2e-07 58.2 57 57.9
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 5.5e-07 57.8 55 60.0
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 7.2e-07 57.4 65 55.4
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 7.2e-07 57.4 81 46.9
QL04p001566 Quercus lobata HOM05D004722 ORTHO05D005453 9.4e-07 57.0 60 56.7
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 9.4e-07 57.0 87 48.3
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 2.7e-06 55.5 57 54.4
FAN10G0002 Fragaria x ananassa HOM05D040482 ORTHO05D005453 4.7e-06 54.7 52 55.8
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 8.0e-06 53.9 80 47.5
MBI19_g17416_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 8.0e-06 53.9 82 43.9


User provided reference genes

Program Settings