Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11284 Brassica carinata HOM05D003998 ORTHO05D005144 1.3e-100 369.8 193 100.0
C04p18040 Brassica napus HOM05D003998 ORTHO05D005144 1.6e-98 362.8 193 98.4
BolC4t23351H Brassica oleracea HOM05D003998 ORTHO05D005144 1.6e-98 362.8 193 98.4
A05p13770 Brassica napus HOM05D003998 ORTHO05D005144 3.1e-94 348.6 193 94.8
BraA05t20313Z Brassica rapa HOM05D003998 ORTHO05D005144 3.1e-94 348.6 193 94.8
BcaB02g10415 Brassica carinata HOM05D003998 ORTHO05D005144 1.4e-91 339.7 193 91.7
Sp4g14180 Schrenkiella parvula HOM05D003998 ORTHO05D005144 2.1e-87 325.9 199 86.9
AT2G31740 Arabidopsis thaliana HOM05D003998 ORTHO05D005144 2.1e-82 309.3 193 82.9
AL4G27000 Arabidopsis lyrata HOM05D003998 ORTHO05D005144 1.8e-81 306.2 193 82.4
CARHR125430 Cardamine hirsuta HOM05D003998 ORTHO05D005144 1.1e-80 303.5 193 83.9
Aa31LG5G5250 Aethionema arabicum HOM05D003998 ORTHO05D005144 9.7e-80 300.4 193 80.8
Carub.0004s1305 Capsella rubella HOM05D003998 ORTHO05D005144 8.2e-79 297.4 215 75.8
Thhalv10016302m.g Eutrema salsugineum HOM05D003998 ORTHO05D005144 1.9e-75 286.2 192 80.7
THA.LOC104826185 Tarenaya hassleriana HOM05D003998 ORTHO05D005144 8.8e-65 250.8 201 67.2
Cpa.g.sc83.25 Carica papaya HOM05D003998 ORTHO05D005144 6.8e-49 198.0 209 56.5
Ciclev10004378m.g Citrus clementina HOM05D003998 ORTHO05D005144 1.7e-47 193.4 200 55.5
Atru.chr4.1608 Acer truncatum HOM05D003998 ORTHO05D005144 2.8e-47 192.6 206 51.9
Thecc.04G198600 Theobroma cacao HOM05D003998 ORTHO05D005144 3.7e-47 192.2 205 54.1
Manes.15G055500 Manihot esculenta HOM05D003998 ORTHO05D005144 4.8e-47 191.8 203 52.2
Duzib151G0324 Durio zibethinus HOM05D003998 ORTHO05D005144 3.1e-46 189.1 205 52.2
COL.COLO4_20194 Corchorus olitorius HOM05D003998 ORTHO05D005144 9.1e-46 187.6 198 55.6
Sabra16G0201000 Salix brachista HOM05D003998 ORTHO05D005144 1.2e-45 187.2 205 51.7
Gohir.D11G007733 Gossypium hirsutum HOM05D003998 ORTHO05D005144 4.5e-45 185.3 194 54.1
Potri.001G317700 Populus trichocarpa HOM05D003998 ORTHO05D005144 5.9e-45 184.9 205 50.7
MD01G1010300 Malus domestica HOM05D003998 ORTHO05D005144 1.0e-44 184.1 198 52.0
MD04G1013700 Malus domestica HOM05D003998 ORTHO05D005144 1.0e-44 184.1 198 52.0
TWI53G1682 Tripterygium wilfordii HOM05D003998 ORTHO05D005144 1.0e-44 184.1 201 53.2
Gohir.A02G020406 Gossypium hirsutum HOM05D003998 ORTHO05D005144 1.3e-44 183.7 194 53.6
Gohir.A01G175301 Gossypium hirsutum HOM05D003998 ORTHO05D005144 1.7e-44 183.3 194 53.6
Gohir.A03G104400 Gossypium hirsutum HOM05D003998 ORTHO05D005144 1.7e-44 183.3 194 53.6
Gohir.A10G130900 Gossypium hirsutum HOM05D003998 ORTHO05D005144 1.7e-44 183.3 194 53.6
Gohir.D02G024300 Gossypium hirsutum HOM05D003998 ORTHO05D005144 1.7e-44 183.3 194 53.6
Prupe.1G159900 Prunus persica HOM05D003998 ORTHO05D005144 2.9e-44 182.6 203 52.7
Gorai.005G030200 Gossypium raimondii HOM05D003998 ORTHO05D005144 5.0e-44 181.8 194 53.6
Gohir.A13G128800 Gossypium hirsutum HOM05D003998 ORTHO05D005144 6.5e-44 181.4 194 53.1
TAR362G0495 Trochodendron aralioides HOM05D003998 ORTHO05D005144 4.2e-43 178.7 207 48.3
CANSAT78G0640 Cannabis sativa HOM05D003998 ORTHO05D005144 5.5e-43 178.3 195 52.3
ClCG05G003230 Citrullus lanatus HOM05D003998 ORTHO05D005144 1.4e-41 173.7 195 51.8
FvH4_4g13510 Fragaria vesca HOM05D003998 ORTHO05D005144 2.3e-41 172.9 206 48.5
CsaV3_3G010860 Cucumis sativus L. HOM05D003998 ORTHO05D005144 4.0e-41 172.2 194 50.5
Lalb_Chr12g0205551 Lupinus albus HOM05D003998 ORTHO05D005144 5.2e-41 171.8 202 50.0
Sed0015957 Sechium edule HOM05D003998 ORTHO05D005144 5.2e-41 171.8 193 50.8
MELO3C006304.2 Cucumis melo HOM05D003998 ORTHO05D005144 1.2e-40 170.6 194 50.0
FAN12G4114 Fragaria x ananassa HOM05D003998 ORTHO05D005144 1.2e-40 170.6 206 48.1
FAN22G0959 Fragaria x ananassa HOM05D003998 ORTHO05D005144 2.6e-40 169.5 206 47.6
EL10Ac3g07474 Beta vulgaris HOM05D003998 ORTHO05D005144 4.4e-40 168.7 199 46.7
Cfa014947 Carpinus fangiana HOM05D003998 ORTHO05D005144 9.8e-40 167.5 202 50.0
CSS0005254 Camellia sinensis var. sinensis HOM05D003998 ORTHO05D005144 1.3e-39 167.2 206 49.5
CiPaw.01G118500 Carya illinoinensis HOM05D003998 ORTHO05D005144 3.7e-39 165.6 205 47.8
GSVIVG01020986001 Vitis vinifera HOM05D003998 ORTHO05D005144 4.9e-39 165.2 211 50.7
PSO017G6005 Papaver somniferum HOM05D003998 ORTHO05D005144 6.3e-39 164.9 193 46.1
arahy.Tifrunner.gnm1.ann1.DT4C3Q Arachis hypogaea HOM05D003998 ORTHO05D005144 8.3e-39 164.5 199 46.7
PSO063G6533 Papaver somniferum HOM05D003998 ORTHO05D005144 8.3e-39 164.5 193 46.1
Haze_11635 Corylus avellana HOM05D003998 ORTHO05D005144 1.1e-38 164.1 202 48.5
Lsat_1_v5_gn_2_46500 Lactuca sativa HOM05D003998 ORTHO05D005144 1.4e-38 163.7 192 52.1
arahy.Tifrunner.gnm1.ann1.7DTN51 Arachis hypogaea HOM05D003998 ORTHO05D005144 4.1e-38 162.2 199 46.7
QL06p026526 Quercus lobata HOM05D003998 ORTHO05D005144 5.4e-38 161.8 206 48.5
RcHm_v2.0_Chr4g0414141 Rosa chinensis HOM05D003998 ORTHO05D005144 5.4e-38 161.8 206 46.1
Glyma.05G153400 Glycine max HOM05D003998 ORTHO05D005144 9.1e-38 161.0 204 47.1
MBI11_g07440_MAGBIO Magnolia biondii HOM05D003998 ORTHO05D005144 9.1e-38 161.0 207 46.9
Actinidia35854 Actinidia chinensis HOM05D003998 ORTHO05D005144 1.2e-37 160.6 201 47.3
TPR.G11885 Trifolium pratense HOM05D003998 ORTHO05D005144 1.6e-37 160.2 191 47.1
HanXRQChr15g0488261 Helianthus annuus HOM05D003998 ORTHO05D005144 2.0e-37 159.8 191 49.2
PGR083G0268 Punica granatum HOM05D003998 ORTHO05D005144 2.7e-37 159.5 189 45.5
Lj4g0023654 Lotus japonicus HOM05D003998 ORTHO05D005144 5.9e-37 158.3 197 46.7
ECA232G0954 Erigeron canadensis HOM05D003998 ORTHO05D005144 1.0e-36 157.5 189 48.7
Sc13g0000280 Simmondsia chinensis HOM05D003998 ORTHO05D005144 1.0e-36 157.5 199 45.2
Ca_17974_v3 Cicer arietinum L. HOM05D003998 ORTHO05D005144 1.3e-36 157.1 203 46.8
MSTRG.21978 Avicennia marina HOM05D003998 ORTHO05D005144 1.7e-36 156.8 189 46.6
Lj6A454G39 Lonicera japonica HOM05D003998 ORTHO05D005144 1.7e-36 156.8 204 42.2
Lj6C491G2 Lonicera japonica HOM05D003998 ORTHO05D005144 1.7e-36 156.8 204 42.2
Hund24398 Selenicereus undatus HOM05D003998 ORTHO05D005144 2.3e-36 156.4 198 46.0
Dinv38203 Davidia involucrata HOM05D003998 ORTHO05D005144 3.8e-36 155.6 193 47.2
Glyma.08G111100 Glycine max HOM05D003998 ORTHO05D005144 3.8e-36 155.6 200 45.0
CAN.G1648.3 Capsicum annuum HOM05D003998 ORTHO05D005144 5.0e-36 155.2 197 43.7
Nitab4.5_0000401g0150 Nicotiana tabacum HOM05D003998 ORTHO05D005144 8.6e-36 154.5 199 43.2
Nitab4.5_0004231g0010 Nicotiana tabacum HOM05D003998 ORTHO05D005144 8.6e-36 154.5 199 43.7
Solyc09g092140.3 Solanum lycopersicum HOM05D003998 ORTHO05D005144 1.1e-35 154.1 197 43.7
PGSC0003DMG400026420 Solanum tuberosum HOM05D003998 ORTHO05D005144 1.9e-35 153.3 197 43.1
AUR62018577 Chenopodium quinoa HOM05D003998 ORTHO05D005144 2.5e-35 152.9 190 43.2
Sopen09g035020 Solanum pennellii HOM05D003998 ORTHO05D005144 2.5e-35 152.9 197 43.1
vmacro00453 Vaccinium macrocarpon HOM05D003998 ORTHO05D005144 2.5e-35 152.9 200 46.5
Ah.13g078040 Amaranthus hybridus HOM05D003998 ORTHO05D005144 3.3e-35 152.5 191 44.0
Psat7g074560 Pisum sativum HOM05D003998 ORTHO05D005144 4.2e-35 152.1 198 46.5
Rhsim09G0058600 Rhododendron simsii HOM05D003998 ORTHO05D005144 4.2e-35 152.1 202 46.0
Cc03_g08110 Coffea canephora HOM05D003998 ORTHO05D005144 5.5e-35 151.8 199 44.7
Phvul.003G050000 Phaseolus vulgaris HOM05D003998 ORTHO05D005144 9.5e-35 151.0 200 46.0
Medtr8g085220 Medicago truncatula HOM05D003998 ORTHO05D005144 1.6e-34 150.2 197 46.2
SGA_v2.0_scaffold128G34122 Striga asiatica HOM05D003998 ORTHO05D005144 4.7e-34 148.7 189 43.4
Eucgr.H02738 Eucalyptus grandis HOM05D003998 ORTHO05D005144 8.0e-34 147.9 202 41.6
ATR0605G199 Amborella trichopoda HOM05D003998 ORTHO05D005144 1.4e-33 147.1 192 46.9
SalBow3G3008 Salvia bowleyana HOM05D003998 ORTHO05D005144 2.6e-32 142.9 167 43.7
Peaxi162Scf00047g00340 Petunia axillaris HOM05D003998 ORTHO05D005144 1.3e-31 140.6 189 42.9
DCAR_026634 Daucus carota HOM05D003998 ORTHO05D005144 1.7e-31 140.2 179 46.9
Aqoxy2G03902 Aquilegia oxysepala HOM05D003998 ORTHO05D005144 2.2e-31 139.8 202 41.6
Migut.N00415 Erythranthe guttata HOM05D003998 ORTHO05D005144 3.7e-31 139.0 189 42.3
Os04g0379300 Oryza sativa ssp. japonica HOM05D003998 ORTHO05D005144 7.8e-29 131.3 169 42.6
Oeu025025.1 Olea europaea HOM05D003998 ORTHO05D005144 2.3e-28 129.8 220 38.6
Zm00001eb420660 Zea mays HOM05D003998 ORTHO05D005144 8.6e-28 127.9 171 45.0
AUR62020839 Chenopodium quinoa HOM05D003998 ORTHO05D005144 4.3e-27 125.6 193 38.9
unitig_22.g6826 Utricularia gibba HOM05D003998 ORTHO05D005144 2.1e-26 123.2 192 40.6
VMungo0251G3649 Vigna mungo HOM05D003998 ORTHO05D005144 5.2e-25 118.6 167 43.7
GSVIVG01020988001 Vitis vinifera HOM05D003998 ORTHO05D005144 5.8e-24 115.2 125 55.2
Migut.I00433 Erythranthe guttata HOM05D003998 ORTHO05D005144 9.8e-24 114.4 162 40.1
Migut.I00213 Erythranthe guttata HOM05D003998 ORTHO05D005144 2.9e-23 112.8 190 37.4
Migut.I00432 Erythranthe guttata HOM05D003998 ORTHO05D005144 6.4e-23 111.7 171 38.6
Migut.N00409 Erythranthe guttata HOM05D003998 ORTHO05D005144 9.2e-22 107.8 190 33.2
Migut.F01776 Erythranthe guttata HOM05D003998 ORTHO05D005144 2.7e-21 106.3 137 40.9
Migut.I00431 Erythranthe guttata HOM05D003998 ORTHO05D005144 7.8e-21 104.8 172 37.2
Migut.N00888 Erythranthe guttata HOM05D003998 ORTHO05D005144 7.8e-21 104.8 221 32.6
Migut.N00785 Erythranthe guttata HOM05D003998 ORTHO05D005144 1.0e-20 104.4 162 37.0
Migut.N00411 Erythranthe guttata HOM05D003998 ORTHO05D005144 1.3e-20 104.0 186 34.9
Migut.N00412 Erythranthe guttata HOM05D003998 ORTHO05D005144 3.0e-20 102.8 186 34.4
Migut.H01109 Erythranthe guttata HOM05D003998 ORTHO05D005144 5.0e-20 102.1 173 35.3
Migut.N00410 Erythranthe guttata HOM05D003998 ORTHO05D005144 1.1e-19 100.9 172 36.6
BcaB05g24360 Brassica carinata HOM05D003998 ORTHO05D005144 1.9e-19 100.1 59 89.8
Migut.F01720 Erythranthe guttata HOM05D003998 ORTHO05D005144 2.8e-18 96.3 172 34.3
SEGI_34578 Sequoiadendron giganteum HOM05D003998 ORTHO05D005144 2.3e-17 93.2 155 41.3
Pp3c8_4600 Physcomitrium patens HOM05D003998 ORTHO05D005144 3.1e-17 92.8 179 33.5
Migut.N00414 Erythranthe guttata HOM05D003998 ORTHO05D005144 4.0e-17 92.4 173 34.1
Atru.chr3.3435 Acer truncatum HOM05D000005 ORTHO05D000012 5.2e-17 92.0 116 44.8
Migut.N00408 Erythranthe guttata HOM05D003998 ORTHO05D005144 2.6e-16 89.7 189 34.4
Pp3c17_2650 Physcomitrium patens HOM05D003998 ORTHO05D005144 2.6e-16 89.7 207 32.9
Migut.O00105 Erythranthe guttata HOM05D003998 ORTHO05D005144 3.4e-16 89.4 174 33.9
FAN07G2317 Fragaria x ananassa HOM05D003998 ORTHO05D005144 1.7e-15 87.0 161 39.8
AagrBONN_evm.TU.Sc2ySwM_117.2891 Anthoceros agrestis HOM05D003998 ORTHO05D005144 2.2e-15 86.7 163 33.7
Migut.I00434 Erythranthe guttata HOM05D003998 ORTHO05D005144 1.2e-13 80.9 190 31.1
Mapoly0151s0004 Marchantia polymorpha HOM05D003998 ORTHO05D005144 1.2e-13 80.9 221 28.1
Migut.C00311 Erythranthe guttata HOM05D003998 ORTHO05D005144 2.1e-13 80.1 148 35.1
Sc20g0001310 Simmondsia chinensis HOM05D006575 ORTHO05D008251 3.5e-13 79.3 189 30.2
Migut.B00567 Erythranthe guttata HOM05D003998 ORTHO05D005144 6.0e-13 78.6 127 37.8
TPR.G22706 Trifolium pratense HOM05D006575 ORTHO05D008251 7.8e-13 78.2 167 29.3
EL10Ac1g02057 Beta vulgaris HOM05D006575 ORTHO05D008251 4.3e-11 72.4 143 28.7
Ca_05248_v3 Cicer arietinum L. HOM05D006575 ORTHO05D008251 4.3e-11 72.4 168 26.2
Psat6g093080 Pisum sativum HOM05D006575 ORTHO05D008251 7.3e-11 71.6 158 27.2
PSO349G0192 Papaver somniferum HOM05D006575 ORTHO05D008251 9.5e-11 71.2 178 28.7
CsaV3_3G002140 Cucumis sativus L. HOM05D006575 ORTHO05D008251 1.2e-10 70.9 150 27.3
PSO765G0131 Papaver somniferum HOM05D006575 ORTHO05D008251 1.2e-10 70.9 178 27.0
MELO3C013886.2 Cucumis melo HOM05D006575 ORTHO05D008251 1.6e-10 70.5 150 26.7
Medtr1g050528 Medicago truncatula HOM05D006575 ORTHO05D008251 6.2e-10 68.6 161 27.3
ClCG00G004800 Citrullus lanatus HOM05D006575 ORTHO05D008251 8.1e-10 68.2 149 26.8
ClCG10G002050 Citrullus lanatus HOM05D006575 ORTHO05D008251 8.1e-10 68.2 149 26.8
Ciclev10031399m.g Citrus clementina HOM05D006575 ORTHO05D008251 1.1e-09 67.8 152 25.0
Sed0005632 Sechium edule HOM05D006575 ORTHO05D008251 1.8e-09 67.0 149 24.8
CBR_g32089 Chara braunii HOM05D003998 ORTHO05D005144 2.3e-09 66.6 114 33.3
MD07G1071500 Malus domestica HOM05D006575 ORTHO05D008251 3.1e-09 66.2 169 24.3
Gohir.A09G221300 Gossypium hirsutum HOM05D006575 ORTHO05D008251 4.0e-09 65.9 191 24.1
AUR62013857 Chenopodium quinoa HOM05D006575 ORTHO05D008251 6.8e-09 65.1 168 26.8
ATR0820G127 Amborella trichopoda HOM05D006575 ORTHO05D008251 8.9e-09 64.7 194 26.8
Lj2C27T14 Lonicera japonica HOM05D006575 ORTHO05D008251 8.9e-09 64.7 188 25.0
Aqoxy1G00940 Aquilegia oxysepala HOM05D006575 ORTHO05D008251 2.0e-08 63.5 111 32.4
CSS0046856 Camellia sinensis var. sinensis HOM05D006575 ORTHO05D008251 2.0e-08 63.5 199 22.6
TWI38G0941 Tripterygium wilfordii HOM05D006575 ORTHO05D008251 2.0e-08 63.5 167 23.4
FvH4_7g06280 Fragaria vesca HOM05D006575 ORTHO05D008251 2.6e-08 63.2 150 25.3
SHI00910 Sapria himalayana HOM05D003998 ORTHO05D005144 3.4e-08 62.8 49 55.1
AUR62036741 Chenopodium quinoa HOM05D006575 ORTHO05D008251 5.8e-08 62.0 129 28.7
GSVIVG01034712001 Vitis vinifera HOM05D006575 ORTHO05D008251 5.8e-08 62.0 135 25.9
Nitab4.5_0002259g0040 Nicotiana tabacum HOM05D006575 ORTHO05D008251 7.6e-08 61.6 158 25.9
Actinidia18575 Actinidia chinensis HOM05D006575 ORTHO05D008251 9.9e-08 61.2 163 25.2
Gorai.006G244900 Gossypium raimondii HOM05D006575 ORTHO05D008251 9.9e-08 61.2 191 23.0
CARHR208680 Cardamine hirsuta HOM05D006575 ORTHO05D008251 1.3e-07 60.8 140 24.3
ECA238G0587 Erigeron canadensis HOM05D006575 ORTHO05D008251 1.7e-07 60.5 138 21.7
Thecc.10G101600 Theobroma cacao HOM05D006575 ORTHO05D008251 1.7e-07 60.5 158 22.8
Haze_02613 Corylus avellana HOM05D006575 ORTHO05D008251 2.9e-07 59.7 169 25.4
SHI21275 Sapria himalayana HOM05D006575 ORTHO05D008251 4.9e-07 58.9 190 27.4
Sopen11g003390 Solanum pennellii HOM05D006575 ORTHO05D008251 6.4e-07 58.5 151 21.9
Atru.chr4.1610 Acer truncatum HOM05D003998 ORTHO05D021041 1.1e-06 57.8 88 43.2
Peaxi162Scf00244g00053 Petunia axillaris HOM05D006575 ORTHO05D008251 1.1e-06 57.8 176 24.4
MSTRG.411 Avicennia marina HOM05D006575 ORTHO05D008251 1.4e-06 57.4 135 25.2
Duzib114G1029 Durio zibethinus HOM05D006575 ORTHO05D008251 1.4e-06 57.4 190 21.1
Potri.010G234600 Populus trichocarpa HOM05D006575 ORTHO05D008251 2.4e-06 56.6 140 23.6
Rhsim03G0106300 Rhododendron simsii HOM05D006575 ORTHO05D008251 3.2e-06 56.2 162 21.6
Cc02_g10220 Coffea canephora HOM05D006575 ORTHO05D008251 4.1e-06 55.8 135 21.5
SGA_v2.0_scaffold8G04418 Striga asiatica HOM05D006575 ORTHO05D008251 4.1e-06 55.8 137 26.3
Lsat_1_v5_gn_2_102621 Lactuca sativa HOM05D006575 ORTHO05D008251 5.4e-06 55.5 153 22.9
A03p17860 Brassica napus HOM05D003998 ORTHO05D028169 7.1e-06 55.1 27 88.9
C03p20940 Brassica napus HOM05D003998 ORTHO05D028169 7.1e-06 55.1 27 88.9
BraA03t11051Z Brassica rapa HOM05D003998 ORTHO05D028169 7.1e-06 55.1 27 88.9
Nitab4.5_0001807g0050 Nicotiana tabacum HOM05D006575 ORTHO05D008251 7.1e-06 55.1 159 23.9
Aa31LG11G5480 Aethionema arabicum HOM05D006575 ORTHO05D008251 9.2e-06 54.7 135 25.2


User provided reference genes

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