Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11256 Brassica carinata HOM05D008213 ORTHO05D009787 1.5e-245 852.4 452 100.0
BolC4t23398H Brassica oleracea HOM05D008213 ORTHO05D009787 1.5e-245 852.4 452 100.0
C04p18480 Brassica napus HOM05D008213 ORTHO05D009787 2.1e-242 842.0 453 98.9
A05p14130 Brassica napus HOM05D008213 ORTHO05D009787 5.2e-233 810.8 452 94.7
BraA05t20342Z Brassica rapa HOM05D008213 ORTHO05D009787 5.2e-233 810.8 452 94.7
BcaB02g10392 Brassica carinata HOM05D008213 ORTHO05D009787 1.1e-190 670.2 457 84.0
Sp4g13940 Schrenkiella parvula HOM05D008213 ORTHO05D009787 9.3e-158 560.8 486 68.7
AL4G26740 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 1.2e-149 533.9 490 64.9
Thhalv10017539m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 2.1e-149 533.1 489 65.8
C04p60980 Brassica napus HOM05D008213 ORTHO05D009787 1.6e-146 523.5 482 65.4
BraA04t17943Z Brassica rapa HOM05D008213 ORTHO05D009787 4.5e-144 515.4 480 64.4
A04p24240 Brassica napus HOM05D008213 ORTHO05D009787 2.5e-142 509.6 480 63.8
AT2G31480 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 3.2e-142 509.2 492 63.4
Carub.0004s1279 Capsella rubella HOM05D008213 ORTHO05D009787 1.1e-139 500.7 487 64.1
CARHR125120 Cardamine hirsuta HOM05D008213 ORTHO05D009787 1.4e-132 477.2 477 62.5
BcaB02g10393 Brassica carinata HOM05D008213 ORTHO05D009787 3.6e-125 452.6 464 61.4
BcaB06g28538 Brassica carinata HOM05D008213 ORTHO05D009787 2.3e-124 449.9 477 61.2
BcaC02g07992 Brassica carinata HOM05D008213 ORTHO05D009787 2.3e-124 449.9 431 64.5
BcaC02g11257 Brassica carinata HOM05D008213 ORTHO05D009787 7.7e-120 434.9 463 59.8
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 1.6e-104 384.0 468 55.1
Thhalv10009329m.g Eutrema salsugineum HOM05D008213 ORTHO05D009787 7.5e-91 338.6 496 47.2
Sp1g04730 Schrenkiella parvula HOM05D008213 ORTHO05D009787 1.7e-87 327.4 488 47.7
THA.LOC104826192 Tarenaya hassleriana HOM05D008213 ORTHO05D009787 5.0e-87 325.9 502 46.6
CARHR005430 Cardamine hirsuta HOM05D008213 ORTHO05D009787 1.9e-86 323.9 484 47.3
AL1G15840 Arabidopsis lyrata HOM05D008213 ORTHO05D009787 7.3e-86 322.0 491 47.0
Aa31LG1G8440 Aethionema arabicum HOM05D008213 ORTHO05D009787 9.5e-86 321.6 485 48.2
AT1G05894 Arabidopsis thaliana HOM05D008213 ORTHO05D009787 9.5e-86 321.6 490 47.1
Carub.0001s0526 Capsella rubella HOM05D008213 ORTHO05D009787 6.1e-85 318.9 490 46.9
C08p02290 Brassica napus HOM05D008213 ORTHO05D009787 1.6e-77 294.3 483 45.5
A08p36230 Brassica napus HOM05D008213 ORTHO05D009787 4.7e-77 292.7 486 45.3
BolC8t47021H Brassica oleracea HOM05D008213 ORTHO05D009787 1.8e-76 290.8 483 45.3
BraA08t35527Z Brassica rapa HOM05D008213 ORTHO05D009787 2.0e-75 287.3 486 44.4
BcaC07g36821 Brassica carinata HOM05D008213 ORTHO05D009787 7.8e-72 275.4 473 43.6
Thecc.04G185000 Theobroma cacao HOM05D008213 ORTHO05D009787 1.3e-26 125.2 517 27.1
Dinv44200 Davidia involucrata HOM05D008213 ORTHO05D009787 8.4e-26 122.5 205 34.6
Duzib151G0756 Durio zibethinus HOM05D008213 ORTHO05D009787 6.1e-24 116.3 252 32.9
Manes.11G119400 Manihot esculenta HOM05D008213 ORTHO05D009787 1.5e-19 101.7 407 26.5
Prupe.1G190600 Prunus persica HOM05D008213 ORTHO05D009787 2.0e-19 101.3 436 28.7
Hma1.2p1_0754F.1_g213080 Hydrangea macrophylla HOM05D008213 ORTHO05D009787 1.3e-18 98.6 213 35.7
TAR362G1061 Trochodendron aralioides HOM05D008213 ORTHO05D009787 1.6e-16 91.7 198 34.3
Gorai.005G020000 Gossypium raimondii HOM05D008213 ORTHO05D009787 2.7e-16 90.9 211 29.9
Gohir.D02G016500 Gossypium hirsutum HOM05D008213 ORTHO05D009787 3.6e-16 90.5 211 31.3
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 3.9e-15 87.0 211 30.3
COL.COLO4_24404 Corchorus olitorius HOM05D008213 ORTHO05D009787 4.3e-14 83.6 212 33.5
Ciclev10023340m.g Citrus clementina HOM05D008213 ORTHO05D009787 2.8e-13 80.9 193 32.1
PGR142G1601 Punica granatum HOM05D008213 ORTHO05D009787 2.8e-13 80.9 376 27.4
QL10p048331 Quercus lobata HOM05D008213 ORTHO05D009787 3.7e-13 80.5 505 24.8
Aqoxy5G00188 Aquilegia oxysepala HOM05D008213 ORTHO05D009787 4.1e-12 77.0 195 30.8
Cpa.g.sc71.7 Carica papaya HOM05D008213 ORTHO05D009787 1.0e-10 72.4 442 24.4
Potri.007G127200 Populus trichocarpa HOM05D008213 ORTHO05D009787 2.9e-10 70.9 459 24.6
DCAR_017617 Daucus carota HOM05D008213 ORTHO05D009787 5.0e-10 70.1 192 28.1
GSVIVG01010744001 Vitis vinifera HOM05D008213 ORTHO05D009787 8.5e-10 69.3 217 30.4
ECA233G5141 Erigeron canadensis HOM05D008213 ORTHO05D009787 1.1e-09 68.9 206 26.7
Glyma.12G053300 Glycine max HOM05D010840 ORTHO05D009787 1.1e-09 68.9 220 28.6
Atru.chr3.1539 Acer truncatum HOM05D008213 ORTHO05D009787 1.9e-09 68.2 154 36.4
Sabra07G0103200 Salix brachista HOM05D008213 ORTHO05D009787 3.2e-09 67.4 192 28.6
CiPaw.01G101800 Carya illinoinensis HOM05D008213 ORTHO05D009787 7.2e-09 66.2 476 24.4
ClCG07G015580 Citrullus lanatus HOM05D008213 ORTHO05D009787 1.4e-07 62.0 180 27.8
Glyma.11G128800 Glycine max HOM05D010840 ORTHO05D009787 1.4e-07 62.0 226 30.5
MELO3C017723.2 Cucumis melo HOM05D008213 ORTHO05D009787 3.0e-07 60.8 208 28.8
arahy.Tifrunner.gnm1.ann1.0UQ2B1 Arachis hypogaea HOM05D010840 ORTHO05D009787 2.6e-06 57.8 205 27.8
CSS0004350 Camellia sinensis var. sinensis HOM05D008213 ORTHO05D009787 4.4e-06 57.0 192 25.5
arahy.Tifrunner.gnm1.ann1.JQ8CCA Arachis hypogaea HOM05D010840 ORTHO05D009787 5.7e-06 56.6 205 27.3


User provided reference genes

Program Settings