Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11231 Brassica carinata HOM05D006190 ORTHO05D027094 4.1e-59 231.1 111 100.0
BcaB02g10385 Brassica carinata HOM05D006190 ORTHO05D008260 4.0e-30 134.8 68 95.6
Aa31LG5G5620 Aethionema arabicum HOM05D006190 ORTHO05D008260 4.6e-26 121.3 68 82.4
BcaC01g05972 Brassica carinata HOM05D006190 ORTHO05D008260 1.5e-24 116.3 64 89.1
AL4G26570 Arabidopsis lyrata HOM05D006190 ORTHO05D008260 1.5e-16 89.7 43 97.7
AT2G31340 Arabidopsis thaliana HOM05D006190 ORTHO05D008260 1.5e-16 89.7 43 97.7
BcaC02g11229 Brassica carinata HOM05D006190 ORTHO05D008260 1.5e-16 89.7 43 97.7
Carub.0004s1265 Capsella rubella HOM05D006190 ORTHO05D008260 1.5e-16 89.7 43 97.7
Thhalv10016459m.g Eutrema salsugineum HOM05D006190 ORTHO05D008260 1.5e-16 89.7 43 97.7
Sp4g13810 Schrenkiella parvula HOM05D006190 ORTHO05D008260 1.5e-16 89.7 43 97.7
Cfa014317 Carpinus fangiana HOM05D006190 ORTHO05D008260 6.3e-15 84.3 64 64.1
Ca_16289_v3 Cicer arietinum L. HOM05D006190 ORTHO05D008260 6.3e-15 84.3 95 49.5
Nitab4.5_0000019g0350 Nicotiana tabacum HOM05D006190 ORTHO05D008260 1.4e-14 83.2 70 54.3
Peaxi162Scf00100g01525 Petunia axillaris HOM05D006190 ORTHO05D008260 1.4e-14 83.2 65 60.0
THA.LOC104800883 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 2.4e-14 82.4 43 88.4
THA.LOC104798591 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 4.1e-14 81.6 43 88.4
AUR62006846 Chenopodium quinoa HOM05D006190 ORTHO05D008260 2.6e-13 79.0 59 62.7
SGA_v2.0_scaffold13G06447 Striga asiatica HOM05D006190 ORTHO05D008260 5.9e-13 77.8 91 41.8
AUR62000500 Chenopodium quinoa HOM05D006190 ORTHO05D008260 1.0e-12 77.0 59 61.0
MBI19_g03678_MAGBIO Magnolia biondii HOM05D006190 ORTHO05D008260 1.0e-12 77.0 65 55.4
Solyc05g042120.4 Solanum lycopersicum HOM05D006190 ORTHO05D008260 1.3e-12 76.6 65 53.8
Gohir.A07G082100 Gossypium hirsutum HOM05D006190 ORTHO05D008260 5.0e-12 74.7 60 60.0
Gohir.D07G088600 Gossypium hirsutum HOM05D006190 ORTHO05D008260 5.0e-12 74.7 60 60.0
Gorai.001G095000 Gossypium raimondii HOM05D006190 ORTHO05D008260 5.0e-12 74.7 60 60.0
Sc06g0009680 Simmondsia chinensis HOM05D006190 ORTHO05D008260 6.5e-12 74.3 56 62.5
Nitab4.5_0006063g0030 Nicotiana tabacum HOM05D006190 ORTHO05D008260 8.5e-12 73.9 57 61.4
CiPaw.03G155000 Carya illinoinensis HOM05D006190 ORTHO05D008260 1.1e-11 73.6 60 56.7
Eucgr.K00752 Eucalyptus grandis HOM05D006190 ORTHO05D008260 1.1e-11 73.6 56 60.7
Eucgr.A01784 Eucalyptus grandis HOM05D006190 ORTHO05D008260 1.4e-11 73.2 39 79.5
Oeu015049.1 Olea europaea HOM05D006190 ORTHO05D008260 1.4e-11 73.2 60 60.0
QL08p030629 Quercus lobata HOM05D006190 ORTHO05D027094 1.4e-11 73.2 48 70.8
Actinidia09748 Actinidia chinensis HOM05D006190 ORTHO05D008260 1.9e-11 72.8 60 53.3
Sed0027843 Sechium edule HOM05D006190 ORTHO05D008260 2.5e-11 72.4 43 76.7
Atru.chr6.3259 Acer truncatum HOM05D006190 ORTHO05D008260 3.2e-11 72.0 60 56.7
EL10Ac8g20037 Beta vulgaris HOM05D006190 ORTHO05D008260 4.2e-11 71.6 53 64.2
ClCG09G011200 Citrullus lanatus HOM05D006190 ORTHO05D008260 4.2e-11 71.6 43 74.4
CsaV3_6G037760 Cucumis sativus L. HOM05D006190 ORTHO05D008260 4.2e-11 71.6 43 72.1
Sopen05g026250 Solanum pennellii HOM05D006190 ORTHO05D008260 4.2e-11 71.6 43 72.1
unitig_46.g18456 Utricularia gibba HOM05D006190 ORTHO05D008260 4.2e-11 71.6 56 58.9
Cpa.g.sc132.24 Carica papaya HOM05D006190 ORTHO05D008260 5.5e-11 71.2 44 68.2
Dinv39750 Davidia involucrata HOM05D006190 ORTHO05D008260 5.5e-11 71.2 43 74.4
Medtr3g080550 Medicago truncatula HOM05D006190 ORTHO05D008260 5.5e-11 71.2 58 55.2
Ah.06g190910 Amaranthus hybridus HOM05D006190 ORTHO05D008260 7.2e-11 70.9 53 62.3
CSS0039152 Camellia sinensis var. sinensis HOM05D006190 ORTHO05D008260 7.2e-11 70.9 43 72.1
Ciclev10017756m.g Citrus clementina HOM05D006190 ORTHO05D008260 7.2e-11 70.9 43 72.1
DCAR_019742 Daucus carota HOM05D006190 ORTHO05D008260 7.2e-11 70.9 43 72.1
Thecc.01G182400 Theobroma cacao HOM05D006190 ORTHO05D008260 7.2e-11 70.9 60 56.7
Psat5g111200 Pisum sativum HOM05D006190 ORTHO05D008260 9.4e-11 70.5 57 56.1
TWI36G1256 Tripterygium wilfordii HOM05D006190 ORTHO05D008260 9.4e-11 70.5 60 55.0
Aqoxy3G00055 Aquilegia oxysepala HOM05D006190 ORTHO05D008260 1.2e-10 70.1 46 69.6
COL.COLO4_21885 Corchorus olitorius HOM05D006190 ORTHO05D008260 1.2e-10 70.1 44 70.5
Potri.002G224300 Populus trichocarpa HOM05D006190 ORTHO05D008260 1.2e-10 70.1 60 55.0
GSVIVG01030506001 Vitis vinifera HOM05D006190 ORTHO05D008260 1.2e-10 70.1 58 58.6
ECA240G2645 Erigeron canadensis HOM05D006190 ORTHO05D008260 1.6e-10 69.7 39 76.9
Manes.13G065900 Manihot esculenta HOM05D006190 ORTHO05D008260 1.6e-10 69.7 43 67.4
Hund15364 Selenicereus undatus HOM05D006190 ORTHO05D027094 1.6e-10 69.7 43 69.8
MSTRG.8117 Avicennia marina HOM05D006190 ORTHO05D008260 2.1e-10 69.3 54 61.1
TPR.G18389 Trifolium pratense HOM05D006190 ORTHO05D008260 2.1e-10 69.3 41 73.2
Os09g0296400 Oryza sativa ssp. japonica HOM05D006190 ORTHO05D008260 2.7e-10 68.9 44 68.2
arahy.Tifrunner.gnm1.ann1.5R2QIE Arachis hypogaea HOM05D006190 ORTHO05D008260 3.6e-10 68.6 41 70.7
Lj1A781G46 Lonicera japonica HOM05D006190 ORTHO05D008260 3.6e-10 68.6 43 69.8
RcHm_v2.0_Chr2g0158021 Rosa chinensis HOM05D006190 ORTHO05D008260 3.6e-10 68.6 43 72.1
Hund00609 Selenicereus undatus HOM05D006190 ORTHO05D008260 3.6e-10 68.6 43 67.4
FvH4_6g42100 Fragaria vesca HOM05D006190 ORTHO05D008260 4.6e-10 68.2 43 69.8
FAN02G1605 Fragaria x ananassa HOM05D006190 ORTHO05D008260 4.6e-10 68.2 43 69.8
FAN05G0691 Fragaria x ananassa HOM05D006190 ORTHO05D008260 4.6e-10 68.2 43 69.8
Rhsim04G0027600 Rhododendron simsii HOM05D006190 ORTHO05D008260 4.6e-10 68.2 43 69.8
HanXRQChr03g0075981 Helianthus annuus HOM05D006190 ORTHO05D008260 6.1e-10 67.8 39 74.4
MD09G1114700 Malus domestica HOM05D006190 ORTHO05D008260 6.1e-10 67.8 43 69.8
Nn1g07299 Nelumbo nucifera HOM05D006190 ORTHO05D008260 6.1e-10 67.8 43 67.4
Sabra02G0171700 Salix brachista HOM05D006190 ORTHO05D008260 6.1e-10 67.8 60 53.3
vmacro12161 Vaccinium macrocarpon HOM05D006190 ORTHO05D008260 6.1e-10 67.8 43 67.4
Lalb_Chr04g0264321 Lupinus albus HOM05D006190 ORTHO05D008260 7.9e-10 67.4 41 70.7
PSO675G0778 Papaver somniferum HOM05D006190 ORTHO05D008260 7.9e-10 67.4 63 52.4
Rhsim04G0034400 Rhododendron simsii HOM05D006190 ORTHO05D008260 7.9e-10 67.4 43 67.4
SEGI_33791 Sequoiadendron giganteum HOM05D006190 ORTHO05D008260 7.9e-10 67.4 55 52.7
FAN14G2650 Fragaria x ananassa HOM05D006190 ORTHO05D008260 1.0e-09 67.0 43 69.8
Glyma.20G058400 Glycine max HOM05D006190 ORTHO05D008260 1.4e-09 66.6 55 56.4
Rhsim06G0167400 Rhododendron simsii HOM05D006190 ORTHO05D008260 1.4e-09 66.6 42 69.0
Migut.F01671 Erythranthe guttata HOM05D006190 ORTHO05D008260 1.8e-09 66.2 39 66.7
MD17G1106200 Malus domestica HOM05D006190 ORTHO05D008260 1.8e-09 66.2 43 69.8
Phvul.006G013000 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 2.3e-09 65.9 41 65.9
Phvul.011G111400 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 2.3e-09 65.9 41 65.9
Zm00001eb309080 Zea mays HOM05D006190 ORTHO05D008260 2.3e-09 65.9 44 63.6
HPP92_020505 Vanilla planifolia HOM05D006190 ORTHO05D008260 3.0e-09 65.5 43 69.8
arahy.Tifrunner.gnm1.ann1.BBUS42 Arachis hypogaea HOM05D006190 ORTHO05D008260 3.9e-09 65.1 41 65.9
PSO541G5374 Papaver somniferum HOM05D006190 ORTHO05D008260 3.9e-09 65.1 56 55.4
PGR083G2874 Punica granatum HOM05D006190 ORTHO05D008260 3.9e-09 65.1 43 62.8
Prupe.3G210000 Prunus persica HOM05D006190 ORTHO05D008260 6.7e-09 64.3 43 62.8
Lj6g0020329 Lotus japonicus HOM05D006190 ORTHO05D008260 8.8e-09 63.9 41 63.4
ATR0736G101 Amborella trichopoda HOM05D006190 ORTHO05D008260 1.5e-08 63.2 54 53.7
CDE07G0814 Ceratophyllum demersum HOM05D006190 ORTHO05D008260 3.3e-08 62.0 52 51.9
Pp3c23_22000 Physcomitrium patens HOM05D006190 ORTHO05D008260 3.1e-06 55.5 50 50.0


User provided reference genes

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