Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11207 Brassica carinata HOM05D003973 ORTHO05D004679 2.9e-99 365.2 177 100.0
BolC4t23456H Brassica oleracea HOM05D003973 ORTHO05D004679 1.6e-97 359.4 175 99.4
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 8.0e-89 330.5 176 90.9
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 1.4e-88 329.7 176 91.5
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 2.3e-88 328.9 176 91.5
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 6.8e-88 327.4 176 90.3
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 8.8e-88 327.0 176 90.3
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 8.8e-88 327.0 176 90.3
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 1.2e-87 326.6 176 90.9
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 7.5e-87 323.9 176 90.3
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 6.3e-86 320.9 176 89.8
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 8.3e-86 320.5 176 90.3
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 1.1e-85 320.1 176 89.8
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 1.1e-85 320.1 176 89.8
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 1.1e-85 320.1 176 89.2
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 2.8e-81 305.4 173 87.3
C04p19230 Brassica napus HOM05D003973 ORTHO05D004679 2.8e-78 295.4 175 84.6
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 2.0e-76 289.3 175 80.6
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 4.5e-76 288.1 175 80.0
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 7.8e-76 287.3 175 78.3
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 1.3e-75 286.6 175 78.3
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 2.9e-75 285.4 175 77.7
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 5.0e-75 284.6 175 77.7
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 5.0e-75 284.6 175 77.1
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 1.5e-74 283.1 175 76.6
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 3.3e-74 282.0 175 76.6
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 4.3e-74 281.6 175 76.0
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 5.6e-74 281.2 175 76.0
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 7.3e-74 280.8 175 74.9
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 7.3e-74 280.8 175 76.0
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 7.3e-74 280.8 175 74.9
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 2.1e-73 279.3 175 74.9
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 2.8e-73 278.9 175 74.9
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 3.6e-73 278.5 175 76.0
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 1.0e-72 276.9 175 73.7
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 1.0e-72 276.9 175 75.4
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 1.4e-72 276.6 175 74.3
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 1.4e-72 276.6 175 74.9
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 1.4e-72 276.6 175 75.4
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 1.4e-72 276.6 175 76.0
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 2.3e-72 275.8 175 74.9
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 2.3e-72 275.8 175 74.3
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 2.3e-72 275.8 175 74.9
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 3.1e-72 275.4 175 74.3
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 3.1e-72 275.4 175 74.3
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 3.1e-72 275.4 175 74.3
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 4.0e-72 275.0 175 75.4
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 4.0e-72 275.0 175 74.9
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 6.8e-72 274.2 175 74.9
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 6.8e-72 274.2 175 73.7
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 8.9e-72 273.9 175 74.3
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 1.5e-71 273.1 175 74.9
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 1.5e-71 273.1 175 74.3
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 2.0e-71 272.7 175 73.1
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 2.0e-71 272.7 175 73.7
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 2.6e-71 272.3 175 73.7
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 2.6e-71 272.3 175 73.1
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 3.4e-71 271.9 175 74.3
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 3.4e-71 271.9 175 73.7
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 3.4e-71 271.9 175 73.7
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 4.4e-71 271.6 175 72.0
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 4.4e-71 271.6 175 72.6
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 4.4e-71 271.6 175 73.1
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 5.8e-71 271.2 175 73.1
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 9.8e-71 270.4 175 73.1
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 9.8e-71 270.4 175 72.6
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 9.8e-71 270.4 175 72.6
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 9.8e-71 270.4 175 73.1
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 1.3e-70 270.0 175 72.0
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 1.3e-70 270.0 175 71.4
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 1.3e-70 270.0 175 73.7
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 1.7e-70 269.6 175 73.1
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 1.7e-70 269.6 175 73.1
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 1.7e-70 269.6 175 73.1
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 1.7e-70 269.6 175 71.4
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 4.9e-70 268.1 175 73.1
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 4.9e-70 268.1 175 72.0
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 4.9e-70 268.1 175 72.6
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 6.4e-70 267.7 176 73.3
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 8.3e-70 267.3 175 73.7
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 1.1e-69 266.9 175 73.1
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 1.1e-69 266.9 175 71.4
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 1.1e-69 266.9 175 71.4
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 1.4e-69 266.5 175 70.9
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 1.4e-69 266.5 175 72.0
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 1.9e-69 266.2 175 72.0
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 2.4e-69 265.8 175 73.1
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 3.2e-69 265.4 175 71.4
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 5.4e-69 264.6 175 69.7
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 1.2e-68 263.5 175 71.4
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 1.2e-68 263.5 175 70.9
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 1.2e-68 263.5 175 72.0
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 1.6e-68 263.1 175 71.4
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 2.7e-68 262.3 175 69.7
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 2.7e-68 262.3 175 70.3
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 2.7e-68 262.3 175 73.1
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 3.5e-68 261.9 175 72.0
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 3.5e-68 261.9 175 72.0
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 7.8e-68 260.8 175 69.1
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 7.8e-68 260.8 175 70.9
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 1.3e-67 260.0 175 70.3
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 1.3e-67 260.0 175 70.9
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 3.0e-67 258.8 175 69.7
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 3.9e-67 258.5 175 69.7
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 6.6e-67 257.7 175 70.3
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 8.6e-67 257.3 175 69.1
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 1.1e-66 256.9 177 70.6
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 1.5e-66 256.5 175 69.1
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 1.5e-66 256.5 175 70.3
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 3.3e-66 255.4 175 69.1
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 3.3e-66 255.4 175 69.7
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 3.3e-66 255.4 175 68.6
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 9.5e-66 253.8 175 70.3
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 1.2e-65 253.4 175 69.7
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 2.1e-65 252.7 175 68.6
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 1.4e-64 250.0 175 69.1
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 1.2e-63 246.9 175 68.6
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 2.0e-63 246.1 176 66.5
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 2.0e-63 246.1 175 66.3
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 3.4e-63 245.4 175 69.1
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 4.4e-63 245.0 175 66.3
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 5.8e-63 244.6 177 65.0
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 9.8e-63 243.8 175 65.7
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 1.7e-62 243.0 175 67.4
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 1.7e-62 243.0 177 64.4
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 6.4e-62 241.1 175 64.0
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 7.1e-61 237.7 175 66.3
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 9.2e-61 237.3 175 63.4
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 2.1e-60 236.1 175 66.9
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 7.8e-60 234.2 175 66.3
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 1.1e-56 223.8 175 66.9
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 2.3e-56 222.6 175 63.4
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 2.3e-56 222.6 175 62.3
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 3.1e-56 222.2 180 61.1
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 5.2e-56 221.5 175 59.4
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 1.2e-55 220.3 175 58.9
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 5.8e-55 218.0 165 62.4
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 2.2e-54 216.1 176 58.5
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 2.9e-54 215.7 175 61.1
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 1.1e-53 213.8 175 57.1
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 2.3e-51 206.1 176 60.8
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 3.0e-51 205.7 176 56.2
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 3.9e-51 205.3 171 58.5
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 1.2e-49 200.3 175 54.9
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 3.6e-49 198.7 175 56.0
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 2.4e-48 196.1 173 60.1
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 8.9e-48 194.1 172 52.3
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 2.6e-47 192.6 175 54.9
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 3.4e-47 192.2 175 56.6
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 1.6e-44 183.3 98 90.8
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 1.6e-44 183.3 98 90.8
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 1.7e-43 179.9 171 50.9
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 2.6e-39 166.0 137 59.9
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 4.4e-39 165.2 102 75.5
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 1.4e-37 160.2 169 44.4
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 8.4e-22 107.8 83 62.7
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 2.3e-19 99.8 134 44.8
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 3.0e-19 99.4 166 34.9
PRCOL_00006952 Prasinoderma coloniale HOM05D003973 ORTHO05D004679 4.3e-10 68.9 127 29.9
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 1.5e-07 60.5 152 25.7
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 4.5e-07 58.9 131 27.5


User provided reference genes

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