Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11194 Brassica carinata HOM05D008879 ORTHO05D010552 1.2e-39 166.0 83 100.0
C04p19410 Brassica napus HOM05D008879 ORTHO05D010552 1.2e-39 166.0 83 100.0
BolC4t23473H Brassica oleracea HOM05D008879 ORTHO05D010552 1.2e-39 166.0 83 100.0
A05p14570 Brassica napus HOM05D008879 ORTHO05D010552 3.9e-38 161.0 83 96.4
BcaB02g10362 Brassica carinata HOM05D008879 ORTHO05D010552 2.2e-33 145.2 83 89.2
Thhalv10017588m.g Eutrema salsugineum HOM05D008879 ORTHO05D010552 3.9e-30 134.4 81 82.7
Sp4g13570 Schrenkiella parvula HOM05D008879 ORTHO05D010552 8.8e-30 133.3 81 81.5
BcaB01g04065 Brassica carinata HOM05D008879 ORTHO05D010552 5.7e-29 130.6 81 80.2
BcaB06g28488 Brassica carinata HOM05D008879 ORTHO05D010552 7.4e-29 130.2 81 80.2
C04p60330 Brassica napus HOM05D008879 ORTHO05D010552 7.4e-29 130.2 81 80.2
BolC4t27533H Brassica oleracea HOM05D008879 ORTHO05D010552 7.4e-29 130.2 81 80.2
A04p23850 Brassica napus HOM05D008879 ORTHO05D010552 2.2e-28 128.6 81 79.0
BraA04t17908Z Brassica rapa HOM05D008879 ORTHO05D010552 2.2e-28 128.6 81 79.0
BcaB06g28411 Brassica carinata HOM05D008879 ORTHO05D010552 4.8e-28 127.5 81 77.8
BcaC01g05980 Brassica carinata HOM05D008879 ORTHO05D010552 4.8e-28 127.5 81 81.5
C03p20490 Brassica napus HOM05D008879 ORTHO05D010552 4.8e-28 127.5 81 81.5
BolC3t14429H Brassica oleracea HOM05D008879 ORTHO05D010552 4.8e-28 127.5 81 81.5
Carub.0004s1234 Capsella rubella HOM05D008879 ORTHO05D010552 1.8e-27 125.6 81 79.0
A03p17370 Brassica napus HOM05D008879 ORTHO05D010552 1.6e-26 122.5 82 80.5
Carub.0004s1233 Capsella rubella HOM05D008879 ORTHO05D010552 1.6e-26 122.5 83 73.5
CARHR124660 Cardamine hirsuta HOM05D008879 ORTHO05D010552 1.6e-26 122.5 83 75.9
CARHR124670 Cardamine hirsuta HOM05D008879 ORTHO05D010552 7.7e-26 120.2 81 74.1
BraA03t11008Z Brassica rapa HOM05D008879 ORTHO05D010552 1.0e-25 119.8 82 79.3
AT2G31083 Arabidopsis thaliana HOM05D008879 ORTHO05D010552 1.7e-25 119.0 81 75.3
AL4G26260 Arabidopsis lyrata HOM05D008879 ORTHO05D010552 8.5e-25 116.7 81 74.1
AL4G26270 Arabidopsis lyrata HOM05D008879 ORTHO05D010552 1.5e-24 115.9 83 72.3
AT2G31085 Arabidopsis thaliana HOM05D008879 ORTHO05D010552 1.5e-24 115.9 81 72.8
THA.LOC104815845 Tarenaya hassleriana HOM05D008879 ORTHO05D010552 3.5e-18 94.7 81 58.0
THA.LOC104826219 Tarenaya hassleriana HOM05D008879 ORTHO05D010552 6.5e-17 90.5 81 58.0
THA.LOC104826220 Tarenaya hassleriana HOM05D008879 ORTHO05D010552 6.5e-17 90.5 81 58.0
Aa31LG5G5820 Aethionema arabicum HOM05D008879 ORTHO05D010552 2.1e-15 85.5 57 73.7
Ciclev10018336m.g Citrus clementina HOM05D008879 ORTHO05D010552 3.1e-11 71.6 76 51.3
Haze_13339 Corylus avellana HOM05D008879 ORTHO05D010552 1.7e-09 65.9 83 48.2
Cfa014710 Carpinus fangiana HOM05D008879 ORTHO05D010552 2.5e-08 62.0 83 45.8
Potri.001G376200 Populus trichocarpa HOM05D008879 ORTHO05D010552 7.2e-08 60.5 81 43.2
Sabra19G0104400 Salix brachista HOM05D008879 ORTHO05D010552 1.6e-07 59.3 84 39.3
Potri.019G090800 Populus trichocarpa HOM05D008879 ORTHO05D010552 2.1e-07 58.9 73 42.5
TWI14G0991 Tripterygium wilfordii HOM05D008879 ORTHO05D010552 2.7e-07 58.5 90 40.0
Lsat_1_v5_gn_7_23461 Lactuca sativa HOM05D012232 ORTHO05D010552 1.8e-06 55.8 43 51.2
CSS0029563 Camellia sinensis var. sinensis HOM05D012232 ORTHO05D010552 4.0e-06 54.7 43 60.5
CSS0045732 Camellia sinensis var. sinensis HOM05D012232 ORTHO05D010552 4.0e-06 54.7 43 60.5
PGSC0003DMG400019979 Solanum tuberosum HOM05D028609 ORTHO05D019109 5.2e-06 54.3 73 45.2
Haze_06271 Corylus avellana HOM05D019009 ORTHO05D013262 6.8e-06 53.9 77 42.9
Sopen07g027340 Solanum pennellii HOM05D028609 ORTHO05D019109 6.8e-06 53.9 73 43.8
Atru.chr6.2826 Acer truncatum HOM05D008879 ORTHO05D010552 8.8e-06 53.5 84 41.7
COL.COLO4_17611 Corchorus olitorius HOM05D017499 ORTHO05D010552 8.8e-06 53.5 61 47.5
TAR624G1413 Trochodendron aralioides HOM05D000001 ORTHO05D000003 8.8e-06 53.5 82 40.2


User provided reference genes

Program Settings