Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11180 Brassica carinata HOM05D030498 ORTHO05D026866 2.2e-44 181.8 85 100.0
BraSC48t46260Z Brassica rapa HOM05D030498 ORTHO05D026866 2.2e-44 181.8 85 100.0
AT2G07656 Arabidopsis thaliana HOM05D030498 ORTHO05D026866 1.1e-43 179.5 85 98.8
BcaC05g26885 Brassica carinata HOM05D030498 ORTHO05D026866 1.8e-25 119.0 54 98.1
CSS0017504 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.3e-07 59.7 69 44.9
RcHm_v2.0_Chr4g0406871 Rosa chinensis HOM05D000003 ORTHO05D000004 1.3e-07 59.7 70 40.0
QL01p016224 Quercus lobata HOM05D000155 ORTHO05D000022 2.8e-07 58.5 65 40.0
AT5G42905 Arabidopsis thaliana HOM05D000003 ORTHO05D000022 3.7e-07 58.2 66 40.9
CSS0021884 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 4.8e-07 57.8 66 43.9
PGR031G0166 Punica granatum HOM05D000155 ORTHO05D000022 4.8e-07 57.8 66 45.5
CSS0032702 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 8.2e-07 57.0 66 42.4
CSS0036731 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 8.2e-07 57.0 66 42.4
RcHm_v2.0_Chr3g0484381 Rosa chinensis HOM05D000003 ORTHO05D000022 8.2e-07 57.0 70 38.6
Actinidia01050 Actinidia chinensis HOM05D000155 ORTHO05D000022 1.1e-06 56.6 65 46.2
Actinidia24692 Actinidia chinensis HOM05D000155 ORTHO05D000022 1.1e-06 56.6 65 46.2
Actinidia31833 Actinidia chinensis HOM05D000155 ORTHO05D000022 1.1e-06 56.6 65 46.2
CSS0032125 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.1e-06 56.6 66 42.4
CSS0041590 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.1e-06 56.6 66 42.4
QL01p016208 Quercus lobata HOM05D000155 ORTHO05D000022 1.1e-06 56.6 65 38.5
QL01p016211 Quercus lobata HOM05D000155 ORTHO05D000022 1.1e-06 56.6 65 38.5
RcHm_v2.0_Chr3g0484471 Rosa chinensis HOM05D000003 ORTHO05D000022 1.4e-06 56.2 66 40.9
CSS0032736 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.4e-06 55.5 66 40.9
Manes.06G020101 Manihot esculenta HOM05D000003 ORTHO05D000004 3.1e-06 55.1 66 37.9
TWI38G0333 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 3.1e-06 55.1 66 42.4
Actinidia31778 Actinidia chinensis HOM05D000155 ORTHO05D000022 4.1e-06 54.7 65 43.1
CSS0038037 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 4.1e-06 54.7 66 42.4
PGR119G2417 Punica granatum HOM05D000003 ORTHO05D000004 4.1e-06 54.7 66 40.9
Thecc.06G025800 Theobroma cacao HOM05D000003 ORTHO05D000022 4.1e-06 54.7 70 40.0
QL04p008062 Quercus lobata HOM05D000009 ORTHO05D000008 6.9e-06 53.9 66 39.4
QL09p016348 Quercus lobata HOM05D000155 ORTHO05D000022 6.9e-06 53.9 66 39.4
SGA_v2.0_scaffold147G36377 Striga asiatica HOM05D000003 ORTHO05D000022 6.9e-06 53.9 70 41.4
QL01p000475 Quercus lobata HOM05D000155 ORTHO05D000022 9.1e-06 53.5 63 41.3
QL01p000570 Quercus lobata HOM05D000155 ORTHO05D000022 9.1e-06 53.5 63 41.3


User provided reference genes

Program Settings