Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11141 Brassica carinata HOM05D000003 ORTHO05D000007 3.3e-52 208.0 98 100.0
A09p40210 Brassica napus HOM05D000003 ORTHO05D000007 2.4e-42 175.3 101 80.2
BraA09t39519Z Brassica rapa HOM05D000003 ORTHO05D000007 2.4e-42 175.3 101 80.2
BcaB06g25353 Brassica carinata HOM05D000003 ORTHO05D000283 1.5e-41 172.6 101 77.2
A10p04200 Brassica napus HOM05D000003 ORTHO05D000007 2.6e-41 171.8 101 76.2
C05p26910 Brassica napus HOM05D000003 ORTHO05D000007 3.4e-41 171.4 101 78.2
BraA02t09306Z Brassica rapa HOM05D000003 ORTHO05D000007 3.4e-41 171.4 101 78.2
BcaB07g30860 Brassica carinata HOM05D000003 ORTHO05D000007 4.5e-41 171.0 101 75.2
A03p34860 Brassica napus HOM05D000003 ORTHO05D000007 5.9e-41 170.6 101 75.2
BolC9t58036H Brassica oleracea HOM05D000003 ORTHO05D000007 5.9e-41 170.6 101 76.2
BraA01t03255Z Brassica rapa HOM05D000003 ORTHO05D000007 7.7e-41 170.2 101 75.2
BcaC04g23526 Brassica carinata HOM05D000003 ORTHO05D000007 1.7e-40 169.1 101 75.2
BcaB02g07776 Brassica carinata HOM05D000003 ORTHO05D000007 2.9e-40 168.3 101 74.3
BraA05t20378Z Brassica rapa HOM05D000003 ORTHO05D000007 1.1e-39 166.4 101 74.3
C02p22170 Brassica napus HOM05D000003 ORTHO05D028000 1.4e-39 166.0 101 72.3
BcaC05g25979 Brassica carinata HOM05D000003 ORTHO05D000007 2.5e-39 165.2 101 73.3
BcaB07g33765 Brassica carinata HOM05D000003 ORTHO05D000007 3.2e-39 164.9 101 71.3
BcaB05g24536 Brassica carinata HOM05D000003 ORTHO05D000283 7.2e-39 163.7 100 72.0
A03p52160 Brassica napus HOM05D000003 ORTHO05D000007 9.4e-39 163.3 101 70.3
A06p28910 Brassica napus HOM05D000003 ORTHO05D000007 9.4e-39 163.3 101 71.3
BcaC01g05180 Brassica carinata HOM05D000003 ORTHO05D000007 1.2e-38 162.9 101 71.3
BcaNung04603 Brassica carinata HOM05D000003 ORTHO05D000007 1.2e-38 162.9 101 69.3
BolC5t32258H Brassica oleracea HOM05D000003 ORTHO05D000007 1.2e-38 162.9 101 70.3
C08p23550 Brassica napus HOM05D000003 ORTHO05D000007 2.1e-38 162.2 101 73.3
BolC2t07137H Brassica oleracea HOM05D000003 ORTHO05D000007 2.7e-38 161.8 101 69.3
BcaB06g25889 Brassica carinata HOM05D000003 ORTHO05D000007 3.6e-38 161.4 101 71.3
BcaC04g21713 Brassica carinata HOM05D000003 ORTHO05D000007 3.6e-38 161.4 101 70.3
BcaC09g50945 Brassica carinata HOM05D000003 ORTHO05D000007 4.6e-38 161.0 101 66.3
BolC9t55712H Brassica oleracea HOM05D000003 ORTHO05D000007 6.1e-38 160.6 101 70.3
Thhalv10024027m.g Eutrema salsugineum HOM05D000003 ORTHO05D000007 1.4e-37 159.5 101 73.3
BcaC02g12237 Brassica carinata HOM05D000003 ORTHO05D000007 1.8e-37 159.1 101 70.3
BolC6t35819H Brassica oleracea HOM05D000003 ORTHO05D000007 1.8e-37 159.1 101 70.3
BcaC08g43363 Brassica carinata HOM05D000003 ORTHO05D000007 2.3e-37 158.7 101 70.3
BraA09t40338Z Brassica rapa HOM05D000003 ORTHO05D000007 3.0e-37 158.3 101 70.3
BcaC08g43142 Brassica carinata HOM05D000003 ORTHO05D000283 8.8e-37 156.8 101 69.3
BcaC05g26139 Brassica carinata HOM05D000003 ORTHO05D000007 2.0e-36 155.6 101 69.3
BcaC03g13859 Brassica carinata HOM05D000003 ORTHO05D000007 2.5e-36 155.2 98 68.4
Thhalv10017828m.g Eutrema salsugineum HOM05D000003 ORTHO05D000007 5.7e-36 154.1 101 70.3
Thhalv10003309m.g Eutrema salsugineum HOM05D000003 ORTHO05D000007 7.4e-36 153.7 100 71.0
BcaC02g09582 Brassica carinata HOM05D000003 ORTHO05D000007 9.7e-36 153.3 101 67.3
BcaB01g03208 Brassica carinata HOM05D000003 ORTHO05D000007 1.7e-35 152.5 101 66.3
BolC1t01692H Brassica oleracea HOM05D000003 ORTHO05D000007 2.2e-35 152.1 101 69.3
BcaC09g48441 Brassica carinata HOM05D000003 ORTHO05D000007 3.7e-35 151.4 101 61.4
Thhalv10015367m.g Eutrema salsugineum HOM05D000003 ORTHO05D000007 4.8e-35 151.0 101 66.3
Thhalv10000459m.g Eutrema salsugineum HOM05D000003 ORTHO05D000007 8.2e-35 150.2 101 68.3
Thhalv10022289m.g Eutrema salsugineum HOM05D000003 ORTHO05D000007 1.1e-34 149.8 101 70.3
AL96U10010 Arabidopsis lyrata HOM05D000003 ORTHO05D000004 1.4e-34 149.4 101 66.3
Thhalv10017665m.g Eutrema salsugineum HOM05D000003 ORTHO05D000007 3.1e-34 148.3 101 70.3
BcaC06g34146 Brassica carinata HOM05D000003 ORTHO05D000283 5.3e-34 147.5 95 68.4
BcaB03g14792 Brassica carinata HOM05D000003 ORTHO05D000007 1.5e-33 146.0 101 64.4
Thhalv10009475m.g Eutrema salsugineum HOM05D000003 ORTHO05D000007 2.0e-33 145.6 101 66.3
Thhalv10002285m.g Eutrema salsugineum HOM05D000003 ORTHO05D000007 2.6e-33 145.2 101 62.4
A01p34820 Brassica napus HOM05D000003 ORTHO05D000007 7.7e-33 143.7 100 67.0
BraA04t18354Z Brassica rapa HOM05D000003 ORTHO05D000007 1.3e-32 142.9 101 61.4
C01p16120 Brassica napus HOM05D000003 ORTHO05D000007 1.7e-32 142.5 101 63.4
BcaNung03157 Brassica carinata HOM05D000003 ORTHO05D000007 2.2e-32 142.1 101 63.4
A03p33310 Brassica napus HOM05D000003 ORTHO05D000007 2.2e-32 142.1 101 60.4
BcaB02g11235 Brassica carinata HOM05D000003 ORTHO05D000007 3.8e-32 141.4 100 64.0
CARHR110840 Cardamine hirsuta HOM05D000003 ORTHO05D000007 8.5e-32 140.2 101 62.4
BcaC07g37540 Brassica carinata HOM05D000003 ORTHO05D000007 1.1e-31 139.8 101 61.4
BcaNung01863 Brassica carinata HOM05D000003 ORTHO05D000007 1.1e-31 139.8 101 61.4
BcaC05g26008 Brassica carinata HOM05D000003 ORTHO05D000007 3.2e-31 138.3 100 63.0
BraA09t36737Z Brassica rapa HOM05D000003 ORTHO05D000007 2.1e-30 135.6 88 68.2
BcaC07g39338 Brassica carinata HOM05D000003 ORTHO05D000007 2.7e-30 135.2 91 69.2
BcaB08g36128 Brassica carinata HOM05D000003 ORTHO05D000007 3.9e-29 131.3 101 57.4
BcaC01g03259 Brassica carinata HOM05D000003 ORTHO05D000007 6.7e-29 130.6 101 57.4
BcaC08g45218 Brassica carinata HOM05D000003 ORTHO05D000007 1.1e-28 129.8 101 60.4
Thhalv10015497m.g Eutrema salsugineum HOM05D000003 ORTHO05D000007 2.2e-27 125.6 101 59.4
BraA06t25893Z Brassica rapa HOM05D000003 ORTHO05D000007 1.1e-26 123.2 97 60.8
BcaB01g02113 Brassica carinata HOM05D000003 ORTHO05D000283 1.4e-26 122.9 101 61.4
BolC4t26086H Brassica oleracea HOM05D000003 ORTHO05D000007 1.4e-26 122.9 78 73.1
BolC8t49985H Brassica oleracea HOM05D000003 ORTHO05D000007 1.4e-26 122.9 78 73.1
BcaC01g00760 Brassica carinata HOM05D000003 ORTHO05D000007 2.2e-24 115.5 78 67.9
BolC9t55311H Brassica oleracea HOM05D000003 ORTHO05D000007 3.8e-24 114.8 81 58.0
BraA07t28386Z Brassica rapa HOM05D000003 ORTHO05D000007 5.0e-24 114.4 81 63.0
BcaC04g20827 Brassica carinata HOM05D000003 ORTHO05D000007 2.7e-22 108.6 83 60.2
BolC9t56730H Brassica oleracea HOM05D000003 ORTHO05D000007 1.0e-21 106.7 78 62.8
BcaC04g18816 Brassica carinata HOM05D000003 ORTHO05D032545 2.3e-21 105.5 101 53.5
THA.LOC104803404 Tarenaya hassleriana HOM05D000003 ORTHO05D000007 3.0e-21 105.1 101 48.5
THA.LOC104804698 Tarenaya hassleriana HOM05D000003 ORTHO05D000004 1.1e-20 103.2 101 45.5
C04p45080 Brassica napus HOM05D028159 ORTHO05D028005 2.0e-20 102.4 71 64.8
THA.LOC104810236 Tarenaya hassleriana HOM05D000003 ORTHO05D000004 1.3e-19 99.8 101 42.6
THA.LOC109116097 Tarenaya hassleriana HOM05D000003 ORTHO05D000007 1.3e-19 99.8 101 43.6
BolC3t17711H Brassica oleracea HOM05D000003 ORTHO05D000007 4.8e-19 97.8 81 53.1
BolC3t18621H Brassica oleracea HOM05D000003 ORTHO05D000007 8.2e-19 97.1 81 56.8
THA.LOC104799764 Tarenaya hassleriana HOM05D000003 ORTHO05D000004 1.8e-18 95.9 101 43.6
BolC4t24667H Brassica oleracea HOM05D000003 ORTHO05D000007 2.4e-18 95.5 73 57.5
C03p63630 Brassica napus HOM05D000003 ORTHO05D000007 4.1e-18 94.7 81 55.6
THA.LOC104801863 Tarenaya hassleriana HOM05D000003 ORTHO05D000004 1.6e-17 92.8 101 41.6
THA.LOC104798687 Tarenaya hassleriana HOM05D000848 ORTHO05D000007 2.0e-17 92.4 101 40.6
THA.LOC104804985 Tarenaya hassleriana HOM05D000848 ORTHO05D000007 2.0e-17 92.4 101 40.6
THA.LOC104815137 Tarenaya hassleriana HOM05D000003 ORTHO05D000007 2.0e-17 92.4 101 41.6
THA.LOC104810234 Tarenaya hassleriana HOM05D000848 ORTHO05D000007 2.6e-17 92.0 101 42.6
THA.LOC104807056 Tarenaya hassleriana HOM05D000003 ORTHO05D000004 3.5e-17 91.7 94 42.6
THA.LOC104810140 Tarenaya hassleriana HOM05D000848 ORTHO05D000007 2.2e-16 89.0 101 40.6
C02p34560 Brassica napus HOM05D000003 ORTHO05D023912 3.8e-16 88.2 67 61.2
BolC5t30822H Brassica oleracea HOM05D000003 ORTHO05D000007 1.4e-13 79.7 50 66.0
C03p60610 Brassica napus HOM05D000003 ORTHO05D000007 4.0e-13 78.2 64 60.9
Carub.0002s0096 Capsella rubella HOM05D000003 ORTHO05D000007 4.0e-13 78.2 100 38.0
BolC3t18316H Brassica oleracea HOM05D000003 ORTHO05D000007 6.8e-13 77.4 64 60.9
Carub.0007s3665 Capsella rubella HOM05D000848 ORTHO05D000007 1.2e-12 76.6 100 37.0
Carub.0003s3297 Capsella rubella HOM05D000848 ORTHO05D000007 1.5e-12 76.3 100 36.0
Carub.0005s0879 Capsella rubella HOM05D000848 ORTHO05D000007 2.0e-12 75.9 100 36.0
Carub.0001s4487 Capsella rubella HOM05D000848 ORTHO05D000007 2.6e-12 75.5 100 36.0
C02p41870 Brassica napus HOM05D000848 ORTHO05D000007 3.4e-12 75.1 100 35.0
BraA05t20679Z Brassica rapa HOM05D000003 ORTHO05D000007 4.4e-12 74.7 55 60.0
BolC1t04980H Brassica oleracea HOM05D000848 ORTHO05D000007 5.7e-12 74.3 100 37.0
C05p35210 Brassica napus HOM05D000848 ORTHO05D000007 9.8e-12 73.6 98 36.7
BolC6t39016H Brassica oleracea HOM05D000848 ORTHO05D000007 9.8e-12 73.6 100 36.0
BraA03t14225Z Brassica rapa HOM05D000848 ORTHO05D000007 9.8e-12 73.6 98 35.7
Carub.0003s3035 Capsella rubella HOM05D000848 ORTHO05D000007 9.8e-12 73.6 101 35.6
Carub.0008s2858 Capsella rubella HOM05D000848 ORTHO05D000007 9.8e-12 73.6 100 33.0
C02p14750 Brassica napus HOM05D000848 ORTHO05D000007 1.3e-11 73.2 100 34.0
BolC3t21044H Brassica oleracea HOM05D000848 ORTHO05D000007 1.3e-11 73.2 100 34.0
BolC5t30929H Brassica oleracea HOM05D000848 ORTHO05D040505 1.3e-11 73.2 100 34.0
BraA01t03344Z Brassica rapa HOM05D000848 ORTHO05D000007 1.3e-11 73.2 95 35.8
THA.LOC104798910 Tarenaya hassleriana HOM05D000848 ORTHO05D000007 1.3e-11 73.2 89 41.6
BraA07t27806Z Brassica rapa HOM05D000848 ORTHO05D000007 1.7e-11 72.8 100 36.0
BolC7t44685H Brassica oleracea HOM05D000848 ORTHO05D000007 3.7e-11 71.6 95 33.7
Carub.0005s0763 Capsella rubella HOM05D000848 ORTHO05D000007 3.7e-11 71.6 100 34.0
BolC8t46845H Brassica oleracea HOM05D000848 ORTHO05D000007 4.8e-11 71.2 92 38.0
BolC8t49135H Brassica oleracea HOM05D000848 ORTHO05D000007 4.8e-11 71.2 100 33.0
BolC5t32237H Brassica oleracea HOM05D000848 ORTHO05D000007 6.3e-11 70.9 97 36.1
BolC1t04199H Brassica oleracea HOM05D000848 ORTHO05D000007 1.1e-10 70.1 100 33.0
BraA08t33282Z Brassica rapa HOM05D000848 ORTHO05D000007 1.4e-10 69.7 100 34.0
Carub.0002s0838 Capsella rubella HOM05D000848 ORTHO05D000007 1.4e-10 69.7 95 34.7
C03p50040 Brassica napus HOM05D000848 ORTHO05D000007 2.4e-10 68.9 95 35.8
BolC3t17296H Brassica oleracea HOM05D000848 ORTHO05D000007 2.4e-10 68.9 95 35.8
BolC5t33992H Brassica oleracea HOM05D000848 ORTHO05D000007 3.1e-10 68.6 100 33.0
THA.LOC104798680 Tarenaya hassleriana HOM05D000003 ORTHO05D000004 3.1e-10 68.6 89 39.3
C04p08060 Brassica napus HOM05D000848 ORTHO05D000007 4.1e-10 68.2 100 33.0
C05p48290 Brassica napus HOM05D000848 ORTHO05D000007 4.1e-10 68.2 100 32.0
C08p42150 Brassica napus HOM05D001783 ORTHO05D003692 4.1e-10 68.2 99 33.3
BolC8t49500H Brassica oleracea HOM05D000848 ORTHO05D000007 4.1e-10 68.2 100 34.0
BolC8t51775H Brassica oleracea HOM05D001783 ORTHO05D003692 4.1e-10 68.2 99 33.3
Carub.0001s3283 Capsella rubella HOM05D000848 ORTHO05D000007 4.1e-10 68.2 100 34.0
C07p22400 Brassica napus HOM05D000848 ORTHO05D000007 7.0e-10 67.4 98 31.6
BolC3t17049H Brassica oleracea HOM05D000848 ORTHO05D000007 7.0e-10 67.4 100 34.0
BolC9t54307H Brassica oleracea HOM05D000848 ORTHO05D000007 7.0e-10 67.4 96 34.4
CARHR116590 Cardamine hirsuta HOM05D000848 ORTHO05D000007 7.0e-10 67.4 100 33.0
C08p15060 Brassica napus HOM05D000848 ORTHO05D032182 1.6e-09 66.2 100 32.0
BolC3t16924H Brassica oleracea HOM05D000179 ORTHO05D000007 2.7e-09 65.5 96 33.3
BcaB01g00854 Brassica carinata HOM05D000848 ORTHO05D000007 5.9e-09 64.3 95 33.7
Aa31LG3G3110 Aethionema arabicum HOM05D000848 ORTHO05D000007 7.7e-09 63.9 99 30.3
BraA05t21963Z Brassica rapa HOM05D000848 ORTHO05D000007 1.7e-08 62.8 91 34.1
C07p21920 Brassica napus HOM05D000003 ORTHO05D041027 2.2e-08 62.4 46 60.9
A01p06400 Brassica napus HOM05D000848 ORTHO05D000007 2.9e-08 62.0 100 32.0
C09p27370 Brassica napus HOM05D000848 ORTHO05D000007 2.9e-08 62.0 100 32.0
CARHR146770 Cardamine hirsuta HOM05D000848 ORTHO05D000007 2.9e-08 62.0 100 31.0
BcaB03g16315 Brassica carinata HOM05D000848 ORTHO05D000007 3.8e-08 61.6 103 30.1
BolC1t05041H Brassica oleracea HOM05D000848 ORTHO05D000007 5.0e-08 61.2 100 30.0
C01p35420 Brassica napus HOM05D000848 ORTHO05D000007 1.1e-07 60.1 103 33.0
BolC7t42724H Brassica oleracea HOM05D000003 ORTHO05D041027 1.1e-07 60.1 46 58.7
BraA02t07668Z Brassica rapa HOM05D000848 ORTHO05D000007 1.1e-07 60.1 103 32.0
BcaC06g35422 Brassica carinata HOM05D000848 ORTHO05D000007 2.5e-07 58.9 63 42.9
C05p28860 Brassica napus HOM05D005618 ORTHO05D007278 3.2e-07 58.5 32 81.2
BolC5t31605H Brassica oleracea HOM05D005618 ORTHO05D007278 3.2e-07 58.5 32 81.2
BolC1t03499H Brassica oleracea HOM05D000848 ORTHO05D000007 4.2e-07 58.2 95 33.7
BcaC04g20687 Brassica carinata HOM05D000848 ORTHO05D000007 5.5e-07 57.8 65 35.4
BcaC05g27646 Brassica carinata HOM05D000003 ORTHO05D023912 7.2e-07 57.4 51 52.9
C05p36340 Brassica napus HOM05D000003 ORTHO05D023912 7.2e-07 57.4 51 52.9
C02p33980 Brassica napus HOM05D000848 ORTHO05D000007 1.2e-06 56.6 73 37.0
QL02p069773 Quercus lobata HOM05D000003 ORTHO05D000007 1.2e-06 56.6 91 29.7
BolC2t09306H Brassica oleracea HOM05D000848 ORTHO05D000007 1.6e-06 56.2 97 33.0
BcaC01g04174 Brassica carinata HOM05D000848 ORTHO05D000007 2.7e-06 55.5 101 27.7
BcaC04g20917 Brassica carinata HOM05D000848 ORTHO05D000007 2.7e-06 55.5 103 28.2
C03p44250 Brassica napus HOM05D000848 ORTHO05D000007 2.7e-06 55.5 101 27.7
BolC5t32358H Brassica oleracea HOM05D000003 ORTHO05D023912 3.6e-06 55.1 50 52.0
C06p21550 Brassica napus HOM05D000848 ORTHO05D022013 6.1e-06 54.3 100 27.0
SHI36804 Sapria himalayana HOM05D000024 ORTHO05D000007 6.1e-06 54.3 82 36.6


User provided reference genes

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