Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 8.5e-105 383.6 190 100.0
C04p20640 Brassica napus HOM05D004613 ORTHO05D006095 1.9e-24 116.7 55 100.0
BolC4t23591H Brassica oleracea HOM05D004613 ORTHO05D006095 1.9e-24 116.7 55 100.0
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 2.5e-24 116.3 165 45.5
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 2.5e-24 116.3 165 45.5
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 2.5e-24 116.3 165 45.5
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 1.6e-23 113.6 198 40.9
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 2.2e-23 113.2 165 44.8
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 2.2e-23 113.2 165 44.8
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 2.8e-23 112.8 165 43.0
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 3.7e-23 112.5 165 44.8
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 4.1e-22 109.0 164 44.5
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 5.3e-22 108.6 165 43.6
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 9.0e-22 107.8 165 43.0
BcaC04g22128 Brassica carinata HOM05D004613 ORTHO05D006095 1.5e-21 107.1 55 90.9
C03p78440 Brassica napus HOM05D012085 ORTHO05D006095 1.5e-21 107.1 54 92.6
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 1.5e-21 107.1 165 42.4
C01p25640 Brassica napus HOM05D004613 ORTHO05D006095 2.6e-21 106.3 55 90.9
C05p42320 Brassica napus HOM05D004613 ORTHO05D006095 2.6e-21 106.3 55 92.7
BolC5t32960H Brassica oleracea HOM05D004613 ORTHO05D006095 2.6e-21 106.3 55 92.7
C09p23030 Brassica napus HOM05D004613 ORTHO05D006095 3.4e-21 105.9 55 89.1
BolC1t02515H Brassica oleracea HOM05D004613 ORTHO05D006095 4.5e-21 105.5 55 90.9
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 7.7e-21 104.8 165 42.4
BolC4t23587H Brassica oleracea HOM05D004613 ORTHO05D006095 7.7e-21 104.8 55 89.1
A06p37600 Brassica napus HOM05D004613 ORTHO05D006095 1.3e-20 104.0 55 90.9
BraA06t26679Z Brassica rapa HOM05D004613 ORTHO05D006095 1.3e-20 104.0 55 90.9
BcaNung04365 Brassica carinata HOM05D004613 ORTHO05D006095 2.9e-20 102.8 55 89.1
BcaC09g50421 Brassica carinata HOM05D004613 ORTHO05D006095 3.8e-20 102.4 55 87.3
BcaNung02466 Brassica carinata HOM05D004613 ORTHO05D006095 3.8e-20 102.4 55 89.1
C07p40710 Brassica napus HOM05D004613 ORTHO05D006095 3.8e-20 102.4 55 89.1
BolC7t44599H Brassica oleracea HOM05D004613 ORTHO05D006095 3.8e-20 102.4 55 89.1
BcaC07g37284 Brassica carinata HOM05D004613 ORTHO05D006095 5.0e-20 102.1 55 87.3
BolC8t47558H Brassica oleracea HOM05D004613 ORTHO05D006095 5.0e-20 102.1 55 87.3
C07p27290 Brassica napus HOM05D004613 ORTHO05D040533 4.2e-19 99.0 55 85.5
BolC7t43257H Brassica oleracea HOM05D004613 ORTHO05D040533 4.2e-19 99.0 55 85.5
C09p29080 Brassica napus HOM05D004613 ORTHO05D006095 5.5e-19 98.6 55 87.3
Sp2g20610 Schrenkiella parvula HOM05D004613 ORTHO05D006095 9.4e-19 97.8 55 85.5
C04p31600 Brassica napus HOM05D004613 ORTHO05D006095 3.6e-18 95.9 57 82.5
C03p71850 Brassica napus HOM05D004613 ORTHO05D006095 4.6e-18 95.5 54 83.3
C02p33910 Brassica napus HOM05D004613 ORTHO05D006095 1.4e-17 94.0 46 97.8
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 1.8e-17 93.6 100 53.0
C09p20670 Brassica napus HOM05D004613 ORTHO05D006095 6.7e-17 91.7 51 88.2
AL6G39630 Arabidopsis lyrata HOM05D004613 ORTHO05D006095 1.5e-16 90.5 55 81.8
Carub.0006s2516 Capsella rubella HOM05D004613 ORTHO05D006095 2.0e-16 90.1 55 80.0
CARHR185980 Cardamine hirsuta HOM05D004613 ORTHO05D006095 2.5e-16 89.7 55 81.8
Thhalv10004565m.g Eutrema salsugineum HOM05D004613 ORTHO05D006095 5.7e-16 88.6 54 81.5
Cpa.g.sc108.59 Carica papaya HOM05D004010 ORTHO05D004995 2.8e-15 86.3 95 48.4
AT5G27395 Arabidopsis thaliana HOM05D004613 ORTHO05D006095 3.7e-15 85.9 55 78.2
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 1.4e-14 84.0 118 43.2
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 9.1e-14 81.3 129 41.9
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 1.2e-13 80.9 129 40.3
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 1.5e-13 80.5 129 41.1
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 2.0e-13 80.1 139 39.6
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 2.6e-13 79.7 125 44.0
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 4.5e-13 79.0 129 41.1
Aa31LG11G9160 Aethionema arabicum HOM05D004613 ORTHO05D006095 5.9e-13 78.6 71 60.6
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 5.9e-13 78.6 129 40.3
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 5.9e-13 78.6 164 36.6
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 7.7e-13 78.2 128 39.8
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 1.0e-12 77.8 102 44.1
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 1.0e-12 77.8 121 40.5
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 1.0e-12 77.8 134 40.3
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 1.0e-12 77.8 134 40.3
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 1.7e-12 77.0 129 41.1
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 2.2e-12 76.6 136 39.7
Ciclev10017517m.g Citrus clementina HOM05D004010 ORTHO05D004995 2.9e-12 76.3 84 45.2
FAN05G3555 Fragaria x ananassa HOM05D004010 ORTHO05D004995 2.9e-12 76.3 121 39.7
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 3.8e-12 75.9 124 42.7
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 5.0e-12 75.5 121 39.7
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 5.0e-12 75.5 121 39.7
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 6.5e-12 75.1 99 38.4
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 8.5e-12 74.7 123 40.7
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 8.5e-12 74.7 129 36.4
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.1e-11 74.3 121 38.8
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 1.9e-11 73.6 154 34.4
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 1.9e-11 73.6 129 38.8
CSS0021155 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 2.5e-11 73.2 114 41.2
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 3.2e-11 72.8 148 33.8
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 3.2e-11 72.8 121 37.2
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 3.2e-11 72.8 152 40.1
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 7.2e-11 71.6 91 45.1
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 7.2e-11 71.6 131 35.1
Atru.chr6.2275 Acer truncatum HOM05D004010 ORTHO05D004995 9.4e-11 71.2 123 39.0
Atru.chr6.2368 Acer truncatum HOM05D004010 ORTHO05D004995 9.4e-11 71.2 123 39.0
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 9.4e-11 71.2 91 46.2
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 1.2e-10 70.9 113 38.1
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 1.2e-10 70.9 163 35.0
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 1.6e-10 70.5 129 38.0
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 1.6e-10 70.5 148 33.8
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 2.1e-10 70.1 146 37.0
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 2.7e-10 69.7 91 47.3
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 3.6e-10 69.3 84 45.2
FAN14G2166 Fragaria x ananassa HOM05D004010 ORTHO05D004995 3.6e-10 69.3 80 46.2
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 3.6e-10 69.3 129 41.1
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 4.7e-10 68.9 117 37.6
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 4.7e-10 68.9 84 44.0
Hma1.2p1_1291F.1_g273520 Hydrangea macrophylla HOM05D004010 ORTHO05D004995 6.1e-10 68.6 132 37.1
Oeu006812.1 Olea europaea HOM05D004010 ORTHO05D004995 6.1e-10 68.6 102 41.2
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 6.1e-10 68.6 129 41.1
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 7.9e-10 68.2 83 42.2
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 7.9e-10 68.2 91 44.0
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 7.9e-10 68.2 78 48.7
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 1.0e-09 67.8 154 35.1
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 1.4e-09 67.4 149 31.5
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 1.4e-09 67.4 91 44.0
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 2.3e-09 66.6 79 45.6
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 3.0e-09 66.2 130 36.9
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 3.0e-09 66.2 117 37.6
Actinidia15574 Actinidia chinensis HOM05D004010 ORTHO05D004995 3.9e-09 65.9 113 38.9
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 3.9e-09 65.9 118 37.3
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 3.9e-09 65.9 105 39.0
BcaB05g24178 Brassica carinata HOM05D004010 ORTHO05D027244 5.1e-09 65.5 93 41.9
CAN.G473.5 Capsicum annuum HOM05D004010 ORTHO05D004995 5.1e-09 65.5 79 46.8
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 5.1e-09 65.5 106 45.3
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 5.1e-09 65.5 129 36.4
Cfa006537 Carpinus fangiana HOM05D004613 ORTHO05D006095 2.6e-08 63.2 73 43.8
BcaC03g15600 Brassica carinata HOM05D008340 ORTHO05D014940 3.3e-08 62.8 49 67.3
Haze_04249 Corylus avellana HOM05D004613 ORTHO05D006095 3.3e-08 62.8 55 52.7
QL03p004304 Quercus lobata HOM05D004613 ORTHO05D006095 7.4e-08 61.6 55 52.7
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 9.7e-08 61.2 88 43.2
Nn1g02102 Nelumbo nucifera HOM05D004613 ORTHO05D006095 9.7e-08 61.2 73 45.2
BcaC04g20970 Brassica carinata HOM05D004613 ORTHO05D014940 1.7e-07 60.5 49 65.3
Hund06717 Selenicereus undatus HOM05D004010 ORTHO05D004995 1.7e-07 60.5 80 45.0
MBI10_g39276_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 2.2e-07 60.1 113 35.4
Hund07039 Selenicereus undatus HOM05D004613 ORTHO05D006095 2.8e-07 59.7 55 49.1
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 4.8e-07 58.9 88 43.2
Potri.013G026700 Populus trichocarpa HOM05D004613 ORTHO05D006095 4.8e-07 58.9 66 43.9
TAR365G0571 Trochodendron aralioides HOM05D004613 ORTHO05D006095 4.8e-07 58.9 48 56.2
Ah.06g187170 Amaranthus hybridus HOM05D004010 ORTHO05D004995 6.3e-07 58.5 82 41.5
MD04G1209800 Malus domestica HOM05D004613 ORTHO05D006095 6.3e-07 58.5 66 45.5
Atru.chr2.494 Acer truncatum HOM05D004613 ORTHO05D006095 8.2e-07 58.2 52 48.1
BcaC04g20309 Brassica carinata HOM05D015522 ORTHO05D031943 8.2e-07 58.2 37 86.5
ATR0626G318 Amborella trichopoda HOM05D004613 ORTHO05D006095 1.1e-06 57.8 44 56.8
Rhsim07G0179300 Rhododendron simsii HOM05D004613 ORTHO05D006095 1.1e-06 57.8 73 39.7
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 1.1e-06 57.8 49 53.1
C04p09800 Brassica napus HOM05D004613 ORTHO05D006095 1.4e-06 57.4 27 88.9
C04p20620 Brassica napus HOM05D000249 ORTHO05D032228 1.8e-06 57.0 53 56.6
BcaC02g11089 Brassica carinata HOM05D000249 ORTHO05D032228 2.4e-06 56.6 31 77.4
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 3.1e-06 56.2 79 39.2
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 4.1e-06 55.8 66 40.9
THA.LOC104818675 Tarenaya hassleriana HOM05D004613 ORTHO05D006095 4.1e-06 55.8 47 55.3
Aqoxy2G03209 Aquilegia oxysepala HOM05D004613 ORTHO05D006095 7.0e-06 55.1 73 41.1
Ciclev10001987m.g Citrus clementina HOM05D004613 ORTHO05D006095 7.0e-06 55.1 52 48.1
MD12G1224400 Malus domestica HOM05D004613 ORTHO05D006095 9.1e-06 54.7 66 42.4
RcHm_v2.0_Chr3g0454031 Rosa chinensis HOM05D004613 ORTHO05D006095 9.1e-06 54.7 66 42.4


User provided reference genes

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