Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11049 Brassica carinata HOM05D005325 ORTHO05D003507 6.4e-59 230.7 131 100.0
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 6.4e-59 230.7 131 100.0
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 1.5e-52 209.5 131 87.8
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 6.4e-51 204.1 131 87.0
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 8.1e-46 187.2 131 78.6
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 1.2e-44 183.3 131 80.2
BcaB02g10272 Brassica carinata HOM05D005325 ORTHO05D003507 1.9e-42 176.0 110 83.6
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 4.2e-42 174.9 127 83.5
BcaB06g28321 Brassica carinata HOM05D005325 ORTHO05D003507 5.4e-42 174.5 131 76.3
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 7.8e-41 170.6 133 77.4
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 7.8e-41 170.6 133 77.4
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 1.0e-40 170.2 133 77.4
Aa31LG5G6840 Aethionema arabicum HOM05D005325 ORTHO05D003507 1.9e-39 166.0 137 70.8
Carub.0004s1074 Capsella rubella HOM05D005325 ORTHO05D003507 5.6e-39 164.5 132 75.0
Thhalv10009101m.g Eutrema salsugineum HOM05D005325 ORTHO05D003507 1.2e-36 156.8 129 67.4
CARHR007020 Cardamine hirsuta HOM05D005325 ORTHO05D003507 9.9e-36 153.7 127 70.9
Sp4g12360 Schrenkiella parvula HOM05D005325 ORTHO05D003507 2.2e-35 152.5 131 71.8
AL1G17450 Arabidopsis lyrata HOM05D005325 ORTHO05D003507 8.4e-35 150.6 129 67.4
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 1.1e-34 150.2 132 74.2
CARHR122980 Cardamine hirsuta HOM05D005325 ORTHO05D003507 3.2e-34 148.7 127 73.2
Sp1g06050 Schrenkiella parvula HOM05D005325 ORTHO05D003507 5.4e-34 147.9 130 66.2
AT1G07300 Arabidopsis thaliana HOM05D005325 ORTHO05D003507 2.7e-33 145.6 127 66.1
BraA09t41987Z Brassica rapa HOM05D005325 ORTHO05D003507 2.7e-33 145.6 131 64.9
Aa31LG1G6560 Aethionema arabicum HOM05D005325 ORTHO05D003507 5.1e-32 141.4 130 64.6
C08p50660 Brassica napus HOM05D005325 ORTHO05D003507 8.7e-32 140.6 129 64.3
BolC8t52594H Brassica oleracea HOM05D005325 ORTHO05D003507 8.7e-32 140.6 129 64.3
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 1.9e-31 139.4 131 71.8
Carub.0001s0660 Capsella rubella HOM05D005325 ORTHO05D003507 1.9e-31 139.4 130 64.6
BcaC07g42009 Brassica carinata HOM05D005325 ORTHO05D003507 3.3e-31 138.7 131 64.9
A10p05870 Brassica napus HOM05D005325 ORTHO05D003507 1.1e-29 133.7 128 61.7
BraA10t42849Z Brassica rapa HOM05D005325 ORTHO05D003507 1.1e-29 133.7 129 62.8
BcaC07g42458 Brassica carinata HOM05D005325 ORTHO05D003507 7.6e-28 127.5 129 61.2
BolC5t29309H Brassica oleracea HOM05D005325 ORTHO05D003507 7.6e-28 127.5 129 61.2
C05p05370 Brassica napus HOM05D005325 ORTHO05D003507 4.9e-27 124.8 127 60.6
Ciclev10029412m.g Citrus clementina HOM05D004233 ORTHO05D003507 8.4e-11 70.9 124 41.9
CiPaw.13G080500 Carya illinoinensis HOM05D004233 ORTHO05D003507 2.5e-10 69.3 119 42.0
Rhsim13G0071800 Rhododendron simsii HOM05D004233 ORTHO05D003507 9.3e-10 67.4 118 39.8
Actinidia25149 Actinidia chinensis HOM05D004233 ORTHO05D003507 1.6e-09 66.6 118 36.4
Duzib150G0257 Durio zibethinus HOM05D004233 ORTHO05D003507 2.7e-09 65.9 128 39.8
Gorai.003G124100 Gossypium raimondii HOM05D004233 ORTHO05D003507 5.1e-08 61.6 96 49.0
Gohir.D03G117700 Gossypium hirsutum HOM05D004233 ORTHO05D003507 6.7e-08 61.2 96 49.0
QL01p037420 Quercus lobata HOM05D004233 ORTHO05D003507 1.1e-07 60.5 110 38.2
Haze_24266 Corylus avellana HOM05D004233 ORTHO05D003507 1.5e-07 60.1 116 41.4
Gohir.A03G049600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.5e-07 60.1 96 47.9
Nitab4.5_0000102g0150 Nicotiana tabacum HOM05D004233 ORTHO05D003507 1.9e-07 59.7 118 33.9
Thecc.05G020400 Theobroma cacao HOM05D004233 ORTHO05D003507 3.3e-07 58.9 85 42.4
Gohir.D05G090600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 7.4e-07 57.8 115 39.1
Gorai.009G093100 Gossypium raimondii HOM05D004233 ORTHO05D003507 7.4e-07 57.8 115 39.1
Gohir.A05G089700 Gossypium hirsutum HOM05D004233 ORTHO05D003507 9.7e-07 57.4 115 39.1
Gorai.001G115000 Gossypium raimondii HOM05D004233 ORTHO05D003507 1.6e-06 56.6 97 40.2
Manes.09G103100 Manihot esculenta HOM05D004233 ORTHO05D003507 2.2e-06 56.2 85 41.2
Cc01_g13980 Coffea canephora HOM05D004233 ORTHO05D003507 2.8e-06 55.8 115 34.8
Lsat_1_v5_gn_9_20140 Lactuca sativa HOM05D004233 ORTHO05D003507 2.8e-06 55.8 103 37.9
Potri.006G097700 Populus trichocarpa HOM05D004233 ORTHO05D003507 6.3e-06 54.7 130 36.9
Nn2g13635 Nelumbo nucifera HOM05D004233 ORTHO05D003507 8.2e-06 54.3 115 36.5


User provided reference genes

Program Settings