Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11036 Brassica carinata HOM05D004332 ORTHO05D005116 9.1e-69 263.5 134 100.0
C04p21940 Brassica napus HOM05D004332 ORTHO05D005116 9.1e-69 263.5 134 100.0
BolC4t23714H Brassica oleracea HOM05D004332 ORTHO05D005116 9.1e-69 263.5 134 100.0
A07p19440 Brassica napus HOM05D004332 ORTHO05D005116 1.0e-67 260.0 134 97.8
BraA07t29650Z Brassica rapa HOM05D004332 ORTHO05D005116 1.7e-67 259.2 134 97.0
BcaB02g10224 Brassica carinata HOM05D004332 ORTHO05D005116 3.0e-64 248.4 134 94.8
A04p21990 Brassica napus HOM05D004332 ORTHO05D005116 4.4e-63 244.6 134 94.0
BraA04t17767Z Brassica rapa HOM05D004332 ORTHO05D005116 5.7e-63 244.2 134 93.3
BcaB06g28270 Brassica carinata HOM05D004332 ORTHO05D005116 9.7e-63 243.4 134 92.5
BcaC02g08120 Brassica carinata HOM05D004332 ORTHO05D005116 2.2e-62 242.3 134 92.5
C04p58150 Brassica napus HOM05D004332 ORTHO05D005116 2.2e-62 242.3 134 92.5
BolC4t27343H Brassica oleracea HOM05D004332 ORTHO05D005116 4.8e-62 241.1 134 91.8
Thhalv10017410m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 4.1e-61 238.0 134 91.8
Sp4g11830 Schrenkiella parvula HOM05D004332 ORTHO05D005116 1.2e-60 236.5 134 91.0
Aa31LG5G7210 Aethionema arabicum HOM05D004332 ORTHO05D005116 2.9e-59 231.9 134 88.1
AT2G29020 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 8.5e-59 230.3 134 87.3
AL146U10030 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 1.1e-58 229.9 134 88.8
Carub.0004s1001 Capsella rubella HOM05D004332 ORTHO05D005116 1.9e-58 229.2 134 88.1
CARHR122250 Cardamine hirsuta HOM05D004332 ORTHO05D005116 5.5e-58 227.6 134 86.6
THA.LOC104826319 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 7.0e-53 210.7 134 78.4
THA.LOC104800671 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 4.5e-52 208.0 134 77.6
CSS0035025 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 6.5e-51 204.1 134 76.1
TWI75G0441 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 2.5e-50 202.2 134 75.4
Carub.0008s2008 Capsella rubella HOM05D004332 ORTHO05D005116 5.5e-50 201.1 134 76.1
THA.LOC104814879 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 5.5e-50 201.1 134 75.4
Dinv04179 Davidia involucrata HOM05D004332 ORTHO05D005116 7.2e-50 200.7 134 76.1
AL8G35880 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 1.2e-49 199.9 134 75.4
EL10Ac7g16034 Beta vulgaris HOM05D004332 ORTHO05D005116 1.6e-49 199.5 134 74.6
Dinv17021 Davidia involucrata HOM05D004332 ORTHO05D005116 1.6e-49 199.5 134 75.4
Dinv42969 Davidia involucrata HOM05D004332 ORTHO05D005116 1.6e-49 199.5 134 75.4
Dinv43130 Davidia involucrata HOM05D004332 ORTHO05D005116 1.6e-49 199.5 134 75.4
Aa31sc23G410 Aethionema arabicum HOM05D004332 ORTHO05D005116 2.1e-49 199.1 134 74.6
CANSAT54G0234 Cannabis sativa HOM05D004332 ORTHO05D005116 2.7e-49 198.7 134 73.1
AT5G59410 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 3.6e-49 198.4 134 75.4
Eucgr.J02045 Eucalyptus grandis HOM05D004332 ORTHO05D005116 3.6e-49 198.4 134 76.1
Sp6g21090 Schrenkiella parvula HOM05D004332 ORTHO05D005116 6.1e-49 197.6 134 73.1
Cc01_g13020 Coffea canephora HOM05D004332 ORTHO05D005116 8.0e-49 197.2 134 73.9
MBI05_g28381_MAGBIO Magnolia biondii HOM05D004332 ORTHO05D005116 8.0e-49 197.2 134 72.4
TWI31G0816 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 8.0e-49 197.2 134 74.6
Thhalv10015001m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 1.0e-48 196.8 135 74.8
Actinidia34413 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.4e-48 196.4 134 73.9
GSVIVG01024938001 Vitis vinifera HOM05D004332 ORTHO05D005116 2.3e-48 195.7 134 74.6
SalBow2G0012 Salvia bowleyana HOM05D004332 ORTHO05D005116 3.0e-48 195.3 134 69.4
MD11G1099700 Malus domestica HOM05D004332 ORTHO05D005116 5.2e-48 194.5 134 70.9
CiPaw.13G092600 Carya illinoinensis HOM05D004332 ORTHO05D005116 6.8e-48 194.1 134 73.1
Gohir.D05G095200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.2e-47 193.4 134 72.4
Gohir.A05G094800 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.5e-47 193.0 134 72.4
Gohir.D05G095080 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.5e-47 193.0 134 72.4
Thecc.09G319900 Theobroma cacao HOM05D004332 ORTHO05D005116 1.5e-47 193.0 134 73.1
CARHR285780 Cardamine hirsuta HOM05D004332 ORTHO05D005116 3.4e-47 191.8 134 69.4
COL.COLO4_18528 Corchorus olitorius HOM05D004332 ORTHO05D005116 3.4e-47 191.8 134 72.4
Glyma.11G138900 Glycine max HOM05D004332 ORTHO05D005116 3.4e-47 191.8 134 70.9
Rhsim01G0229500 Rhododendron simsii HOM05D004332 ORTHO05D005116 3.4e-47 191.8 134 72.4
TAR633G2148 Trochodendron aralioides HOM05D004332 ORTHO05D005116 3.4e-47 191.8 134 71.6
Gohir.A03G043200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 4.4e-47 191.4 134 70.9
MD03G1090100 Malus domestica HOM05D004332 ORTHO05D005116 4.4e-47 191.4 134 70.1
Oeu017398.1 Olea europaea HOM05D004332 ORTHO05D005116 4.4e-47 191.4 134 72.4
CSS0027892 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 5.7e-47 191.0 134 73.1
CiPaw.14G067900 Carya illinoinensis HOM05D004332 ORTHO05D005116 5.7e-47 191.0 134 71.6
Duzib150G0187 Durio zibethinus HOM05D004332 ORTHO05D005116 5.7e-47 191.0 134 71.6
arahy.Tifrunner.gnm1.ann1.KAW7XL Arachis hypogaea HOM05D004332 ORTHO05D005116 7.5e-47 190.7 134 69.4
AUR62009559 Chenopodium quinoa HOM05D004332 ORTHO05D005116 7.5e-47 190.7 134 68.7
Potri.009G032100 Populus trichocarpa HOM05D004332 ORTHO05D005116 7.5e-47 190.7 134 69.4
Manes.01G172400 Manihot esculenta HOM05D004332 ORTHO05D005116 9.8e-47 190.3 134 70.9
Prupe.6G074300 Prunus persica HOM05D004332 ORTHO05D005116 9.8e-47 190.3 134 70.9
Hma1.2p1_0615F.1_g189860 Hydrangea macrophylla HOM05D004332 ORTHO05D005116 1.3e-46 189.9 134 71.6
Gohir.D03G124100 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.7e-46 189.5 134 70.9
THA.LOC104810775 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 1.7e-46 189.5 134 72.4
Migut.N00901 Erythranthe guttata HOM05D004332 ORTHO05D005116 2.2e-46 189.1 134 70.1
Oeu002423.1 Olea europaea HOM05D004332 ORTHO05D005116 2.2e-46 189.1 134 70.1
Actinidia37195 Actinidia chinensis HOM05D004332 ORTHO05D005116 2.8e-46 188.7 134 70.9
Ciclev10029562m.g Citrus clementina HOM05D004332 ORTHO05D005116 2.8e-46 188.7 134 68.7
Glyma.12G062500 Glycine max HOM05D004332 ORTHO05D005116 2.8e-46 188.7 134 68.7
Gorai.009G098500 Gossypium raimondii HOM05D004332 ORTHO05D005116 2.8e-46 188.7 134 71.6
Manes.02G131400 Manihot esculenta HOM05D004332 ORTHO05D005116 2.8e-46 188.7 134 71.6
QL01p031517 Quercus lobata HOM05D004332 ORTHO05D005116 3.7e-46 188.3 133 69.9
Sc21g0005870 Simmondsia chinensis HOM05D004332 ORTHO05D005116 6.3e-46 187.6 134 70.9
Potri.001G241500 Populus trichocarpa HOM05D004332 ORTHO05D005116 8.3e-46 187.2 114 78.1
VMungo1127G1024 Vigna mungo HOM05D004332 ORTHO05D005116 8.3e-46 187.2 131 71.0
Gorai.003G130800 Gossypium raimondii HOM05D004332 ORTHO05D005116 1.4e-45 186.4 135 70.4
CsaV3_6G016760 Cucumis sativus L. HOM05D004332 ORTHO05D005116 1.8e-45 186.0 134 69.4
Duzib168G2052 Durio zibethinus HOM05D004332 ORTHO05D005116 1.8e-45 186.0 134 69.4
Lsat_1_v5_gn_9_23661 Lactuca sativa HOM05D004332 ORTHO05D005116 1.8e-45 186.0 136 68.4
Lalb_Chr03g0026581 Lupinus albus HOM05D004332 ORTHO05D005116 1.8e-45 186.0 134 67.2
TPR.G34281 Trifolium pratense HOM05D004332 ORTHO05D005116 1.8e-45 186.0 134 67.9
MELO3C025906.2 Cucumis melo HOM05D004332 ORTHO05D005116 2.4e-45 185.7 134 69.4
Gohir.D07G103500 Gossypium hirsutum HOM05D004332 ORTHO05D005116 2.4e-45 185.7 133 71.4
Phvul.011G063600 Phaseolus vulgaris HOM05D004332 ORTHO05D005116 3.1e-45 185.3 130 70.0
Hund04945 Selenicereus undatus HOM05D004332 ORTHO05D005116 3.1e-45 185.3 134 70.1
Gohir.A07G099000 Gossypium hirsutum HOM05D004332 ORTHO05D005116 4.1e-45 184.9 134 72.4
HanXRQChr08g0237001 Helianthus annuus HOM05D004332 ORTHO05D005116 4.1e-45 184.9 134 69.4
Sc12g0001450 Simmondsia chinensis HOM05D004332 ORTHO05D005116 4.1e-45 184.9 134 68.7
ClCG02G020050 Citrullus lanatus HOM05D004332 ORTHO05D005116 5.4e-45 184.5 127 71.7
Lalb_Chr19g0137881 Lupinus albus HOM05D004332 ORTHO05D005116 5.4e-45 184.5 134 67.2
AUR62001771 Chenopodium quinoa HOM05D004332 ORTHO05D005116 7.0e-45 184.1 134 66.4
Psat5g286720 Pisum sativum HOM05D004332 ORTHO05D005116 7.0e-45 184.1 130 67.7
Medtr2g097270 Medicago truncatula HOM05D004332 ORTHO05D005116 9.1e-45 183.7 115 73.9
Nn2g11136 Nelumbo nucifera HOM05D004332 ORTHO05D005116 9.1e-45 183.7 134 68.7
RcHm_v2.0_Chr5g0065351 Rosa chinensis HOM05D004332 ORTHO05D005116 9.1e-45 183.7 122 71.3
SGA_v2.0_scaffold132G34538 Striga asiatica HOM05D004332 ORTHO05D005116 9.1e-45 183.7 134 68.7
ECA247G3838 Erigeron canadensis HOM05D004332 ORTHO05D005116 2.7e-44 182.2 129 69.8
FvH4_3g36490 Fragaria vesca HOM05D004332 ORTHO05D005116 2.7e-44 182.2 130 68.5
FAN11G3576 Fragaria x ananassa HOM05D004332 ORTHO05D005116 2.7e-44 182.2 130 68.5
CDE04G0625 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 3.5e-44 181.8 134 66.4
FAN16G1081 Fragaria x ananassa HOM05D004332 ORTHO05D005116 3.5e-44 181.8 134 67.9
Sed0019241 Sechium edule HOM05D004332 ORTHO05D005116 4.5e-44 181.4 134 67.2
unitig_6.g29275 Utricularia gibba HOM05D004332 ORTHO05D005116 4.5e-44 181.4 134 65.7
unitig_747.g21434 Utricularia gibba HOM05D004332 ORTHO05D005116 4.5e-44 181.4 134 65.7
FAN25G2250 Fragaria x ananassa HOM05D004332 ORTHO05D005116 5.9e-44 181.0 130 67.7
Ah.08g219640 Amaranthus hybridus HOM05D004332 ORTHO05D005116 7.7e-44 180.6 134 66.4
CDE07G0755 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 1.0e-43 180.3 134 65.7
Oeu064111.2 Olea europaea HOM05D004332 ORTHO05D005116 1.3e-43 179.9 134 67.2
Rhsim13G0081500 Rhododendron simsii HOM05D004332 ORTHO05D005116 1.3e-43 179.9 134 67.9
ClCG03G001410 Citrullus lanatus HOM05D004332 ORTHO05D005116 2.9e-43 178.7 134 65.7
Gorai.001G111400 Gossypium raimondii HOM05D004332 ORTHO05D005116 6.6e-43 177.6 126 71.4
Lj3g0024178 Lotus japonicus HOM05D004332 ORTHO05D005116 8.6e-43 177.2 130 66.9
Sabra09G0022800 Salix brachista HOM05D004332 ORTHO05D005116 8.6e-43 177.2 125 69.6
Sed0013921 Sechium edule HOM05D004332 ORTHO05D005116 8.6e-43 177.2 134 65.7
arahy.Tifrunner.gnm1.ann1.WMUR0J Arachis hypogaea HOM05D004332 ORTHO05D005116 1.5e-42 176.4 121 70.2
PSO151G0214 Papaver somniferum HOM05D004332 ORTHO05D005116 1.5e-42 176.4 118 69.5
PSO339G1935 Papaver somniferum HOM05D004332 ORTHO05D005116 1.5e-42 176.4 112 71.4
CAN.G394.64 Capsicum annuum HOM05D004332 ORTHO05D005116 1.9e-42 176.0 134 64.2
Sabra16G0146000 Salix brachista HOM05D004332 ORTHO05D005116 1.9e-42 176.0 144 63.9
Nitab4.5_0000463g0140 Nicotiana tabacum HOM05D004332 ORTHO05D005116 3.3e-42 175.3 134 64.2
MELO3C020622.2 Cucumis melo HOM05D004332 ORTHO05D005116 4.2e-42 174.9 134 62.7
Nitab4.5_0001326g0120 Nicotiana tabacum HOM05D004332 ORTHO05D005116 4.2e-42 174.9 134 64.2
ATR0559G209 Amborella trichopoda HOM05D004332 ORTHO05D005116 5.6e-42 174.5 134 66.4
PGSC0003DMG400030417 Solanum tuberosum HOM05D004332 ORTHO05D005116 7.2e-42 174.1 131 64.9
Solyc06g076260.3 Solanum lycopersicum HOM05D004332 ORTHO05D005116 1.2e-41 173.3 131 65.6
Aqoxy1G00923 Aquilegia oxysepala HOM05D004332 ORTHO05D005116 1.6e-41 172.9 130 67.7
Sed0025770 Sechium edule HOM05D004332 ORTHO05D005116 1.6e-41 172.9 134 62.7
vmacro14542 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 2.1e-41 172.6 122 69.7
PGR102G2585 Punica granatum HOM05D004332 ORTHO05D005116 2.8e-41 172.2 136 66.9
CsaV3_1G034360 Cucumis sativus L. HOM05D004332 ORTHO05D005116 1.0e-40 170.2 134 62.7
arahy.Tifrunner.gnm1.ann1.TT4C38 Arachis hypogaea HOM05D004332 ORTHO05D005116 2.3e-40 169.1 131 64.9
DCAR_018915 Daucus carota HOM05D004332 ORTHO05D005116 3.0e-40 168.7 123 61.8
TAR636G3330 Trochodendron aralioides HOM05D004332 ORTHO05D005116 3.0e-40 168.7 106 73.6
Lsat_1_v5_gn_8_73521 Lactuca sativa HOM05D004332 ORTHO05D005116 4.0e-40 168.3 126 63.5
arahy.Tifrunner.gnm1.ann1.A22IES Arachis hypogaea HOM05D004332 ORTHO05D005116 1.2e-39 166.8 126 65.1
SEGI_11468 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 1.5e-39 166.4 119 63.9
Atru.chr3.3947 Acer truncatum HOM05D004332 ORTHO05D005116 6.4e-38 161.0 142 61.3
Os05g0110600 Oryza sativa ssp. japonica HOM05D004332 ORTHO05D005116 5.4e-37 157.9 113 65.5
HanXRQChr07g0197291 Helianthus annuus HOM05D004332 ORTHO05D005116 2.7e-36 155.6 123 61.8
Mapoly0045s0062 Marchantia polymorpha HOM05D004332 ORTHO05D005116 7.8e-36 154.1 117 58.1
Nn2g13368 Nelumbo nucifera HOM05D004332 ORTHO05D005116 2.3e-35 152.5 91 76.9
Zm00001eb266910 Zea mays HOM05D004332 ORTHO05D005116 2.3e-35 152.5 122 59.8
SMO304G0081 Selaginella moellendorffii HOM05D004332 ORTHO05D005116 3.3e-34 148.7 134 53.0
AagrBONN_evm.TU.Sc2ySwM_228.3328 Anthoceros agrestis HOM05D004332 ORTHO05D005116 3.6e-33 145.2 103 68.0
Pp3c16_16760 Physcomitrium patens HOM05D004332 ORTHO05D005116 3.6e-33 145.2 113 59.3
Pp3c6_17300 Physcomitrium patens HOM05D004332 ORTHO05D005116 1.1e-29 133.7 113 53.1
AL4G23580 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 5.4e-29 131.3 78 84.6
Sopen06g032690 Solanum pennellii HOM05D004332 ORTHO05D005116 2.3e-24 115.9 78 65.4
Actinidia07026 Actinidia chinensis HOM05D004332 ORTHO05D005116 8.9e-24 114.0 85 67.1
Haze_24115 Corylus avellana HOM05D004332 ORTHO05D005116 2.9e-22 109.0 81 70.4
FAN21G1178 Fragaria x ananassa HOM05D004332 ORTHO05D005116 4.6e-20 101.7 63 76.2
TAR369G0503 Trochodendron aralioides HOM05D004332 ORTHO05D005116 6.6e-19 97.8 79 64.6
vmacro03061 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 1.1e-18 97.1 83 61.4
SEGI_12680 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 2.3e-16 89.4 65 60.0
Actinidia23932 Actinidia chinensis HOM05D004332 ORTHO05D005116 2.0e-15 86.3 60 70.0
Peaxi162Scf00774g00129 Petunia axillaris HOM05D004332 ORTHO05D005116 2.6e-15 85.9 56 67.9
SHI47893 Sapria himalayana HOM05D004332 ORTHO05D005116 1.0e-11 73.9 50 66.0
Cre08.g376000 Chlamydomonas reinhardtii HOM05D004332 ORTHO05D005116 1.2e-09 67.0 95 37.9
HPP92_028206 Vanilla planifolia HOM05D004332 ORTHO05D005116 2.1e-09 66.2 50 62.0
Eucgr.H02119 Eucalyptus grandis HOM05D004332 ORTHO05D005116 4.4e-07 58.5 42 64.3


User provided reference genes

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