Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10920 Brassica carinata HOM05D003219 ORTHO05D027510 4.6e-39 164.1 82 100.0
C04p23680 Brassica napus HOM05D003219 ORTHO05D027510 2.5e-29 131.7 81 85.2
BolC4t23865H Brassica oleracea HOM05D003219 ORTHO05D027510 9.0e-27 123.2 81 80.2
AL6G40770 Arabidopsis lyrata HOM05D003219 ORTHO05D005190 1.0e-22 109.8 87 71.3
BcaC07g37857 Brassica carinata HOM05D003219 ORTHO05D027510 1.5e-21 105.9 59 88.1
AT5G28740 Arabidopsis thaliana HOM05D003219 ORTHO05D005190 3.4e-18 94.7 106 53.8
CARHR185310 Cardamine hirsuta HOM05D003219 ORTHO05D005190 7.6e-18 93.6 106 52.8
Sp2g20070 Schrenkiella parvula HOM05D003219 ORTHO05D005190 7.6e-18 93.6 106 52.8
Carub.0006s2599 Capsella rubella HOM05D003219 ORTHO05D005190 2.5e-16 88.6 106 50.9
Aa31LG11G8590 Aethionema arabicum HOM05D003219 ORTHO05D005190 7.1e-16 87.0 106 50.0
BcaNung02109 Brassica carinata HOM05D003219 ORTHO05D018367 1.2e-15 86.3 106 49.1
THA.LOC104799261 Tarenaya hassleriana HOM05D003219 ORTHO05D005190 1.6e-15 85.9 106 48.1
Thhalv10003625m.g Eutrema salsugineum HOM05D003219 ORTHO05D005190 3.5e-15 84.7 106 49.1
Haze_06562 Corylus avellana HOM05D003219 ORTHO05D005190 1.5e-13 79.3 106 45.3
BcaC03g17751 Brassica carinata HOM05D003219 ORTHO05D005190 1.9e-13 79.0 56 73.2
C02p57630 Brassica napus HOM05D003219 ORTHO05D005190 1.9e-13 79.0 56 73.2
BolC2t11836H Brassica oleracea HOM05D003219 ORTHO05D005190 1.9e-13 79.0 56 73.2
Cfa000363 Carpinus fangiana HOM05D003219 ORTHO05D005190 1.9e-13 79.0 106 45.3
Thecc.06G197600 Theobroma cacao HOM05D003219 ORTHO05D005190 2.5e-13 78.6 106 45.3
Gohir.D05G167800 Gossypium hirsutum HOM05D003219 ORTHO05D005190 3.3e-13 78.2 103 46.6
Gorai.009G172900 Gossypium raimondii HOM05D003219 ORTHO05D005190 3.3e-13 78.2 103 46.6
A02p38300 Brassica napus HOM05D003219 ORTHO05D005190 4.3e-13 77.8 56 71.4
BraA02t08811Z Brassica rapa HOM05D003219 ORTHO05D005190 4.3e-13 77.8 56 71.4
Duzib235G0214 Durio zibethinus HOM05D003219 ORTHO05D005190 4.3e-13 77.8 103 46.6
CDE07G0042 Ceratophyllum demersum HOM05D003219 ORTHO05D005190 5.7e-13 77.4 77 55.8
CiPaw.09G158900 Carya illinoinensis HOM05D003219 ORTHO05D005190 7.4e-13 77.0 106 44.3
BcaB07g34174 Brassica carinata HOM05D003219 ORTHO05D005190 9.6e-13 76.6 56 71.4
COL.COLO4_31569 Corchorus olitorius HOM05D003219 ORTHO05D005190 1.3e-12 76.3 103 45.6
TWI63G1169 Tripterygium wilfordii HOM05D003219 ORTHO05D005190 1.3e-12 76.3 106 43.4
Dinv40503 Davidia involucrata HOM05D003219 ORTHO05D005190 2.1e-12 75.5 106 43.4
MBI19_g24733_MAGBIO Magnolia biondii HOM05D003219 ORTHO05D005190 2.1e-12 75.5 106 43.4
Potri.004G035600 Populus trichocarpa HOM05D003219 ORTHO05D005190 2.1e-12 75.5 106 42.5
BcaC05g27821 Brassica carinata HOM05D003219 ORTHO05D020042 2.8e-12 75.1 105 46.7
C05p38210 Brassica napus HOM05D003219 ORTHO05D020042 2.8e-12 75.1 105 46.7
BolC5t32549H Brassica oleracea HOM05D003219 ORTHO05D020042 2.8e-12 75.1 105 46.7
CANSAT78G1072 Cannabis sativa HOM05D003219 ORTHO05D005190 3.7e-12 74.7 106 42.5
SHI02082 Sapria himalayana HOM05D003219 ORTHO05D005190 4.8e-12 74.3 103 43.7
RcHm_v2.0_Chr5g0006191 Rosa chinensis HOM05D003219 ORTHO05D005190 6.2e-12 73.9 88 50.0
MSTRG.28076 Avicennia marina HOM05D003219 ORTHO05D005190 8.2e-12 73.6 103 43.7
ECA247G0108 Erigeron canadensis HOM05D003219 ORTHO05D005190 8.2e-12 73.6 106 41.5
Gohir.A05G164800 Gossypium hirsutum HOM05D003219 ORTHO05D005190 8.2e-12 73.6 102 45.1
Manes.16G021600 Manihot esculenta HOM05D003219 ORTHO05D005190 8.2e-12 73.6 106 41.5
HanXRQChr01g0016091 Helianthus annuus HOM05D003219 ORTHO05D005190 1.1e-11 73.2 106 41.5
Manes.17G039900 Manihot esculenta HOM05D003219 ORTHO05D005190 1.4e-11 72.8 87 50.6
ATR0753G017 Amborella trichopoda HOM05D003219 ORTHO05D005190 1.8e-11 72.4 106 41.5
ECA248G3185 Erigeron canadensis HOM05D003219 ORTHO05D005190 1.8e-11 72.4 106 41.5
Migut.N01473 Erythranthe guttata HOM05D003219 ORTHO05D005190 2.4e-11 72.0 106 40.6
Migut.N01591 Erythranthe guttata HOM05D003219 ORTHO05D005190 2.4e-11 72.0 106 40.6
FAN16G0751 Fragaria x ananassa HOM05D003219 ORTHO05D005190 2.4e-11 72.0 106 42.5
Lj9A630T39 Lonicera japonica HOM05D003219 ORTHO05D005190 2.4e-11 72.0 106 41.5
Rhsim10G0099900 Rhododendron simsii HOM05D003219 ORTHO05D005190 3.1e-11 71.6 103 41.7
CAN.G1131.23 Capsicum annuum HOM05D003219 ORTHO05D005190 4.0e-11 71.2 106 41.5
ClCG01G022630 Citrullus lanatus HOM05D003219 ORTHO05D005190 4.0e-11 71.2 106 41.5
MELO3C007313.2 Cucumis melo HOM05D003219 ORTHO05D005190 4.0e-11 71.2 106 41.5
CsaV3_6G049830 Cucumis sativus L. HOM05D003219 ORTHO05D005190 4.0e-11 71.2 106 41.5
Glyma.13G245700 Glycine max HOM05D003219 ORTHO05D005190 4.0e-11 71.2 106 41.5
Glyma.15G068100 Glycine max HOM05D003219 ORTHO05D005190 4.0e-11 71.2 106 41.5
Lsat_1_v5_gn_1_110001 Lactuca sativa HOM05D003219 ORTHO05D005190 4.0e-11 71.2 106 39.6
Nitab4.5_0000634g0070 Nicotiana tabacum HOM05D003219 ORTHO05D005190 4.0e-11 71.2 106 41.5
Peaxi162Scf00428g00711 Petunia axillaris HOM05D003219 ORTHO05D005190 4.0e-11 71.2 106 41.5
RcHm_v2.0_Chr5g0006601 Rosa chinensis HOM05D003219 ORTHO05D005190 4.0e-11 71.2 103 43.7
Sed0027994 Sechium edule HOM05D003219 ORTHO05D005190 4.0e-11 71.2 106 41.5
Solyc01g086990.3 Solanum lycopersicum HOM05D003219 ORTHO05D005190 4.0e-11 71.2 106 41.5
Sopen01g034000 Solanum pennellii HOM05D003219 ORTHO05D005190 4.0e-11 71.2 106 41.5
PGSC0003DMG400006877 Solanum tuberosum HOM05D003219 ORTHO05D005190 4.0e-11 71.2 106 41.5
unitig_578.g16698 Utricularia gibba HOM05D003219 ORTHO05D005190 4.0e-11 71.2 106 41.5
VMungo0540G2265 Vigna mungo HOM05D003219 ORTHO05D005190 4.0e-11 71.2 106 41.5
MD05G1324400 Malus domestica HOM05D003219 ORTHO05D005190 5.3e-11 70.9 103 43.7
MD10G1302200 Malus domestica HOM05D003219 ORTHO05D005190 5.3e-11 70.9 103 43.7
Phvul.006G191500 Phaseolus vulgaris HOM05D003219 ORTHO05D005190 5.3e-11 70.9 106 40.6
Atru.chr10.1995 Acer truncatum HOM05D003219 ORTHO05D005190 6.9e-11 70.5 106 41.5
Ca_00267_v3 Cicer arietinum L. HOM05D003219 ORTHO05D005190 6.9e-11 70.5 106 41.5
Ciclev10014187m.g Citrus clementina HOM05D003219 ORTHO05D005190 6.9e-11 70.5 103 43.7
DCAR_025033 Daucus carota HOM05D003219 ORTHO05D005190 6.9e-11 70.5 103 41.7
Eucgr.E03448 Eucalyptus grandis HOM05D003219 ORTHO05D005190 6.9e-11 70.5 103 42.7
Medtr2g012310 Medicago truncatula HOM05D003219 ORTHO05D005190 6.9e-11 70.5 106 41.5
Psat1g208040 Pisum sativum HOM05D003219 ORTHO05D005190 6.9e-11 70.5 106 41.5
PGR042G1909 Punica granatum HOM05D003219 ORTHO05D005190 6.9e-11 70.5 106 40.6
Hund25208 Selenicereus undatus HOM05D003219 ORTHO05D005190 6.9e-11 70.5 106 41.5
TPR.G16428 Trifolium pratense HOM05D003219 ORTHO05D005190 6.9e-11 70.5 106 41.5
TPR.G36818 Trifolium pratense HOM05D003219 ORTHO05D005190 6.9e-11 70.5 106 41.5
arahy.Tifrunner.gnm1.ann1.U3KJRG Arachis hypogaea HOM05D003219 ORTHO05D005190 9.0e-11 70.1 106 41.5
Rhsim13G0173900 Rhododendron simsii HOM05D003219 ORTHO05D005190 9.0e-11 70.1 103 41.7
vmacro03828 Vaccinium macrocarpon HOM05D003219 ORTHO05D005190 9.0e-11 70.1 103 41.7
vmacro23297 Vaccinium macrocarpon HOM05D003219 ORTHO05D005190 9.0e-11 70.1 103 41.7
Lalb_Chr11g0066351 Lupinus albus HOM05D003219 ORTHO05D005190 1.2e-10 69.7 106 41.5
Lalb_Chr23g0271291 Lupinus albus HOM05D003219 ORTHO05D005190 1.2e-10 69.7 106 41.5
Sc17g0006530 Simmondsia chinensis HOM05D003219 ORTHO05D005190 1.5e-10 69.3 106 41.5
TAR369G0028 Trochodendron aralioides HOM05D003219 ORTHO05D005190 1.5e-10 69.3 106 40.6
AUR62018141 Chenopodium quinoa HOM05D003219 ORTHO05D005190 2.0e-10 68.9 106 41.5
AUR62034479 Chenopodium quinoa HOM05D003219 ORTHO05D005190 2.0e-10 68.9 106 41.5
DCAR_003206 Daucus carota HOM05D003219 ORTHO05D005190 2.0e-10 68.9 106 39.6
Ah.03g134710 Amaranthus hybridus HOM05D003219 ORTHO05D005190 2.6e-10 68.6 106 41.5
Nitab4.5_0005198g0010 Nicotiana tabacum HOM05D003219 ORTHO05D005190 2.6e-10 68.6 106 40.6
Aqoxy5G02588 Aquilegia oxysepala HOM05D003219 ORTHO05D005190 3.4e-10 68.2 104 41.3
EL10Ac6g13262 Beta vulgaris HOM05D003219 ORTHO05D005190 3.4e-10 68.2 106 40.6
Lj6g0004744 Lotus japonicus HOM05D003219 ORTHO05D005190 3.4e-10 68.2 103 41.7
SMO358G0499 Selaginella moellendorffii HOM05D003219 ORTHO05D005190 5.8e-10 67.4 106 38.7
PSO384G2756 Papaver somniferum HOM05D003219 ORTHO05D005190 1.0e-09 66.6 104 40.4
QL05p081849 Quercus lobata HOM05D003219 ORTHO05D005190 1.0e-09 66.6 56 60.7
RhsimUnG0236300 Rhododendron simsii HOM05D003219 ORTHO05D005190 1.0e-09 66.6 102 39.2
Cc02_g12290 Coffea canephora HOM05D003219 ORTHO05D005190 1.3e-09 66.2 106 38.7
Hma1.2p1_0144F.1_g064800 Hydrangea macrophylla HOM05D003219 ORTHO05D005190 1.3e-09 66.2 113 38.9
C07p40150 Brassica napus HOM05D003219 ORTHO05D018367 1.7e-09 65.9 51 66.7
Dinv39809 Davidia involucrata HOM05D003219 ORTHO05D018367 1.7e-09 65.9 101 39.6
PSO339G3037 Papaver somniferum HOM05D003219 ORTHO05D005190 1.7e-09 65.9 104 39.4
HPP92_001864 Vanilla planifolia HOM05D003219 ORTHO05D005190 1.7e-09 65.9 106 37.7
HPP92_001897 Vanilla planifolia HOM05D003219 ORTHO05D005190 1.7e-09 65.9 106 37.7
CBR_g3193 Chara braunii HOM05D003219 ORTHO05D005190 2.2e-09 65.5 83 48.2
AL2G15710 Arabidopsis lyrata HOM05D003219 ORTHO05D005190 2.9e-09 65.1 104 40.4
BolC7t44552H Brassica oleracea HOM05D003219 ORTHO05D018367 2.9e-09 65.1 51 64.7
Rhsim07G0241400 Rhododendron simsii HOM05D003219 ORTHO05D005190 5.0e-09 64.3 102 39.2
Sabra04G0021400 Salix brachista HOM05D003219 ORTHO05D005190 8.4e-09 63.5 56 55.4
Actinidia05586 Actinidia chinensis HOM05D003219 ORTHO05D005190 1.1e-08 63.2 64 51.6
AagrBONN_evm.TU.Sc2ySwM_344.294 Anthoceros agrestis HOM05D003219 ORTHO05D005190 1.9e-08 62.4 104 38.5
Phvul.006G191100 Phaseolus vulgaris HOM05D003219 ORTHO05D005190 1.9e-08 62.4 106 36.8
SGA_v2.0_scaffold5G02978 Striga asiatica HOM05D003219 ORTHO05D005190 2.5e-08 62.0 109 36.7
FAN11G2280 Fragaria x ananassa HOM05D003219 ORTHO05D005190 4.2e-08 61.2 104 36.5
BcaB04g19106 Brassica carinata HOM05D003219 ORTHO05D032346 7.1e-08 60.5 34 85.3
A10p11140 Brassica napus HOM05D003219 ORTHO05D020042 7.1e-08 60.5 48 70.8
C04p20450 Brassica napus HOM05D011137 ORTHO05D020042 9.3e-08 60.1 58 63.8
BraA10t43207Z Brassica rapa HOM05D011137 ORTHO05D020042 9.3e-08 60.1 34 85.3
FvH4_3g04150 Fragaria vesca HOM05D003219 ORTHO05D005190 1.2e-07 59.7 94 41.5
FAN11G2522 Fragaria x ananassa HOM05D003219 ORTHO05D005190 1.2e-07 59.7 94 41.5
FAN21G1982 Fragaria x ananassa HOM05D003219 ORTHO05D005190 1.2e-07 59.7 94 41.5
FAN25G3232 Fragaria x ananassa HOM05D003219 ORTHO05D005190 1.2e-07 59.7 94 41.5
QL03p054350 Quercus lobata HOM05D003219 ORTHO05D005190 1.2e-07 59.7 39 74.4
Sopen03g007850 Solanum pennellii HOM05D003219 ORTHO05D005190 1.2e-07 59.7 58 53.4
COL.COLO4_30962 Corchorus olitorius HOM05D003219 ORTHO05D005190 1.6e-07 59.3 103 36.9
Oeu015223.1 Olea europaea HOM05D003219 ORTHO05D005190 2.7e-07 58.5 39 71.8
ECA240G1068 Erigeron canadensis HOM05D003219 ORTHO05D005190 3.5e-07 58.2 48 58.3
Prupe.4G035800 Prunus persica HOM05D003219 ORTHO05D005190 3.5e-07 58.2 36 77.8
arahy.Tifrunner.gnm1.ann1.AH329K Arachis hypogaea HOM05D003219 ORTHO05D005190 4.6e-07 57.8 42 66.7
CDE04G1938 Ceratophyllum demersum HOM05D003219 ORTHO05D005190 6.1e-07 57.4 56 53.6
RcHm_v2.0_Chr7g0193971 Rosa chinensis HOM05D003219 ORTHO05D005190 7.9e-07 57.0 92 40.2
ATR0564G130 Amborella trichopoda HOM05D003219 ORTHO05D005190 2.3e-06 55.5 60 46.7
SalBow6G2379 Salvia bowleyana HOM05D003219 ORTHO05D005190 2.3e-06 55.5 94 38.3
FvH4_3g03910 Fragaria vesca HOM05D003219 ORTHO05D005190 3.0e-06 55.1 95 35.8
FAN16G0728 Fragaria x ananassa HOM05D003219 ORTHO05D005190 3.0e-06 55.1 95 35.8
Prupe.5G013200 Prunus persica HOM05D003219 ORTHO05D005190 3.0e-06 55.1 93 38.7
SGA_v2.0_scaffold24G10682 Striga asiatica HOM05D003219 ORTHO05D005190 5.1e-06 54.3 94 39.4


User provided reference genes

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