Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 2.8e-39 164.9 84 100.0
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 2.9e-36 154.8 82 97.6
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 2.9e-36 154.8 82 97.6
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 6.4e-36 153.7 82 96.3
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 8.3e-36 153.3 82 95.1
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 8.3e-36 153.3 82 95.1
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 1.4e-35 152.5 82 95.1
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 1.8e-35 152.1 82 93.9
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 1.8e-35 152.1 82 93.9
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 1.8e-35 152.1 82 93.9
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.8e-35 152.1 82 95.1
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 5.4e-35 150.6 82 95.1
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 7.0e-35 150.2 82 92.7
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 1.2e-34 149.4 82 92.7
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 1.6e-34 149.1 82 92.7
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 2.0e-34 148.7 82 93.9
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 2.7e-34 148.3 82 93.9
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 5.9e-34 147.1 82 91.5
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 5.9e-34 147.1 95 84.2
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 1.0e-33 146.4 82 91.5
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 3.9e-33 144.4 92 84.8
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 4.7e-31 137.5 82 84.1
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 6.2e-31 137.1 88 85.2
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 2.3e-30 135.2 82 80.5
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 4.0e-30 134.4 82 81.7
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 4.0e-30 134.4 82 80.5
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 8.9e-30 133.3 82 79.3
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 1.2e-29 132.9 82 79.3
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 1.2e-29 132.9 82 81.7
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 1.2e-29 132.9 82 81.7
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 1.5e-29 132.5 82 79.3
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 1.5e-29 132.5 82 79.3
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 1.5e-29 132.5 82 80.5
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 1.5e-29 132.5 82 80.5
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 2.0e-29 132.1 82 78.0
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 2.0e-29 132.1 82 80.5
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 2.0e-29 132.1 82 79.3
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 2.6e-29 131.7 82 80.5
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 3.4e-29 131.3 82 79.3
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 3.4e-29 131.3 82 78.0
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 4.4e-29 131.0 82 79.3
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 4.4e-29 131.0 82 80.5
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 5.8e-29 130.6 82 80.5
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 9.8e-29 129.8 82 80.5
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 9.8e-29 129.8 82 81.7
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 9.8e-29 129.8 82 80.5
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 1.3e-28 129.4 82 79.3
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 1.7e-28 129.0 82 78.0
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 1.7e-28 129.0 82 76.8
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 1.7e-28 129.0 82 78.0
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 1.7e-28 129.0 81 79.0
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 1.7e-28 129.0 82 76.8
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.7e-28 129.0 82 78.0
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 1.7e-28 129.0 82 76.8
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 1.7e-28 129.0 82 79.3
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 1.7e-28 129.0 82 80.5
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 2.2e-28 128.6 81 80.2
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 2.2e-28 128.6 82 76.8
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 2.2e-28 128.6 82 78.0
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.2e-28 128.6 82 78.0
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.2e-28 128.6 82 78.0
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.2e-28 128.6 82 78.0
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 2.2e-28 128.6 81 77.8
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 2.2e-28 128.6 82 79.3
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 2.2e-28 128.6 82 80.5
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 2.2e-28 128.6 81 79.0
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 2.9e-28 128.3 82 78.0
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 2.9e-28 128.3 82 78.0
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 2.9e-28 128.3 82 79.3
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 3.7e-28 127.9 82 76.8
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 3.7e-28 127.9 82 76.8
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 3.7e-28 127.9 82 74.4
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 3.7e-28 127.9 82 73.2
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 4.9e-28 127.5 82 78.0
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 4.9e-28 127.5 82 78.0
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 6.4e-28 127.1 81 79.0
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 6.4e-28 127.1 81 79.0
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 6.4e-28 127.1 82 75.6
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 6.4e-28 127.1 82 76.8
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 1.1e-27 126.3 82 78.0
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 1.1e-27 126.3 82 72.0
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 1.4e-27 125.9 82 78.0
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 1.4e-27 125.9 81 77.8
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 1.9e-27 125.6 82 75.6
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.9e-27 125.6 82 76.8
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 1.9e-27 125.6 82 78.0
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 1.9e-27 125.6 82 74.4
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.9e-27 125.6 82 76.8
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 2.4e-27 125.2 82 75.6
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 2.4e-27 125.2 82 76.8
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 2.4e-27 125.2 82 74.4
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 3.2e-27 124.8 82 76.8
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 3.2e-27 124.8 81 76.5
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 3.2e-27 124.8 81 77.8
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 3.2e-27 124.8 81 77.8
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 3.2e-27 124.8 82 70.7
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 3.2e-27 124.8 82 76.8
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 3.2e-27 124.8 82 76.8
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 3.2e-27 124.8 82 76.8
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 4.1e-27 124.4 82 75.6
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 4.1e-27 124.4 81 76.5
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 4.1e-27 124.4 82 76.8
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 4.1e-27 124.4 82 78.0
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 4.1e-27 124.4 82 76.8
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 5.4e-27 124.0 82 75.6
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 7.0e-27 123.6 82 74.4
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 7.0e-27 123.6 82 72.0
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 7.0e-27 123.6 82 73.2
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 7.0e-27 123.6 82 76.8
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 9.2e-27 123.2 81 77.8
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 1.2e-26 122.9 82 72.0
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 1.2e-26 122.9 82 75.6
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 1.2e-26 122.9 83 75.9
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 1.2e-26 122.9 83 74.7
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 1.2e-26 122.9 81 77.8
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 1.2e-26 122.9 82 72.0
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 2.0e-26 122.1 82 75.6
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 2.0e-26 122.1 81 75.3
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 2.7e-26 121.7 82 75.6
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 6.0e-26 120.6 82 73.2
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 7.8e-26 120.2 82 73.2
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 7.8e-26 120.2 82 70.7
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 1.0e-25 119.8 82 69.5
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 5.0e-25 117.5 82 73.2
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 8.6e-25 116.7 82 73.2
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.5e-24 115.2 82 73.2
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 5.6e-24 114.0 82 72.0
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 7.3e-24 113.6 82 70.7
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 1.2e-23 112.8 81 71.6
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 1.6e-23 112.5 82 65.9
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 1.6e-23 112.5 82 70.7
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.1e-23 112.1 82 70.7
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 6.2e-23 110.5 82 68.3
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 6.2e-23 110.5 82 68.3
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 6.2e-23 110.5 82 68.3
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 6.2e-23 110.5 82 68.3
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 2.3e-22 108.6 75 74.7
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 8.9e-22 106.7 82 67.1
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 8.9e-22 106.7 69 75.4
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 2.2e-20 102.1 80 63.8
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.9e-20 101.7 73 67.1
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 2.9e-20 101.7 81 60.5
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 8.3e-20 100.1 82 57.3
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 1.4e-19 99.4 82 61.0
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 2.7e-18 95.1 83 60.2
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 5.1e-17 90.9 69 66.7
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 2.5e-16 88.6 81 53.1
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 2.5e-16 88.6 84 60.7
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 9.5e-16 86.7 164 35.4
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 9.5e-16 86.7 60 70.0
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 2.4e-14 82.0 63 65.1
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 5.8e-13 77.4 46 82.6
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.4e-11 72.0 74 51.4
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 4.6e-10 67.8 80 47.5
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 4.6e-10 67.8 46 71.7
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 6.0e-10 67.4 50 62.0
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 1.0e-09 66.6 46 65.2
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 2.5e-08 62.0 64 51.6
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 2.5e-08 62.0 46 67.4
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 5.2e-06 54.3 46 54.3


User provided reference genes

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