Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10878 Brassica carinata HOM05D006639 ORTHO05D008339 1.8e-63 246.5 158 100.0
C04p24130 Brassica napus HOM05D006639 ORTHO05D008339 1.8e-63 246.5 158 100.0
BolC4t23910H Brassica oleracea HOM05D006639 ORTHO05D008339 1.8e-63 246.5 158 100.0
BraA07t29539Z Brassica rapa HOM05D006639 ORTHO05D008339 8.9e-58 227.6 155 91.0
A07p18230 Brassica napus HOM05D006639 ORTHO05D008339 4.4e-57 225.3 155 89.0
BcaB02g10091 Brassica carinata HOM05D006639 ORTHO05D008339 2.4e-55 219.5 151 94.7
Sp4g10260 Schrenkiella parvula HOM05D006639 ORTHO05D008339 6.2e-51 204.9 159 83.0
AT2G27470 Arabidopsis thaliana HOM05D006639 ORTHO05D008339 4.9e-48 195.3 167 80.8
BolC3t15529H Brassica oleracea HOM05D006639 ORTHO05D008339 1.9e-47 193.4 155 77.4
Aa31LG5G8810 Aethionema arabicum HOM05D006639 ORTHO05D008339 1.2e-46 190.7 146 69.2
BcaC01g04942 Brassica carinata HOM05D006639 ORTHO05D008339 3.5e-46 189.1 155 76.1
C03p31860 Brassica napus HOM05D006639 ORTHO05D008339 3.5e-46 189.1 155 72.3
AL4G21460 Arabidopsis lyrata HOM05D006639 ORTHO05D008339 6.0e-46 188.3 104 89.4
CARHR120120 Cardamine hirsuta HOM05D006639 ORTHO05D008339 7.8e-46 188.0 154 75.3
Carub.0004s0810 Capsella rubella HOM05D006639 ORTHO05D008339 3.0e-45 186.0 103 89.3
Thhalv10017865m.g Eutrema salsugineum HOM05D006639 ORTHO05D008339 5.8e-41 171.8 96 88.5
BcaB01g03073 Brassica carinata HOM05D006639 ORTHO05D008339 2.2e-40 169.9 170 58.2
THA.LOC104826426 Tarenaya hassleriana HOM05D006639 ORTHO05D008339 2.9e-40 169.5 104 77.9
Duzib168G1184 Durio zibethinus HOM05D006639 ORTHO05D008339 2.1e-38 163.3 104 75.0
Thecc.09G282700 Theobroma cacao HOM05D006639 ORTHO05D008339 2.7e-38 162.9 103 77.7
Gohir.A05G080500 Gossypium hirsutum HOM05D006639 ORTHO05D008339 3.9e-37 159.1 104 74.0
Gorai.009G085200 Gossypium raimondii HOM05D006639 ORTHO05D008339 3.9e-37 159.1 104 74.0
Gohir.D05G083500 Gossypium hirsutum HOM05D006639 ORTHO05D008339 1.9e-36 156.8 103 76.7
Manes.11G162100 Manihot esculenta HOM05D006639 ORTHO05D008339 1.2e-35 154.1 109 72.5
Potri.009G163500 Populus trichocarpa HOM05D006639 ORTHO05D008339 3.6e-35 152.5 107 72.9
Lj3g0014332 Lotus japonicus HOM05D006639 ORTHO05D008339 4.7e-35 152.1 96 76.0
Ciclev10029525m.g Citrus clementina HOM05D006639 ORTHO05D008339 6.2e-35 151.8 106 68.9
Ca_19409_v3 Cicer arietinum L. HOM05D006639 ORTHO05D008339 1.1e-34 151.0 99 73.7
Eucgr.J00499 Eucalyptus grandis HOM05D006639 ORTHO05D008339 1.8e-34 150.2 96 76.0
CsaV3_6G038390 Cucumis sativus L. HOM05D006639 ORTHO05D008339 2.3e-34 149.8 96 75.0
arahy.Tifrunner.gnm1.ann1.I7PXCJ Arachis hypogaea HOM05D006639 ORTHO05D008339 3.1e-34 149.4 96 72.9
TPR.G17231 Trifolium pratense HOM05D006639 ORTHO05D008339 3.1e-34 149.4 99 72.7
MELO3C014503.2 Cucumis melo HOM05D006639 ORTHO05D008339 4.0e-34 149.1 99 72.7
arahy.Tifrunner.gnm1.ann1.UG6V14 Arachis hypogaea HOM05D006639 ORTHO05D008339 5.2e-34 148.7 105 68.6
PGR119G2179 Punica granatum HOM05D006639 ORTHO05D008339 5.2e-34 148.7 99 72.7
Psat7g187880 Pisum sativum HOM05D006639 ORTHO05D008339 6.8e-34 148.3 99 72.7
PSO339G4282 Papaver somniferum HOM05D006639 ORTHO05D008339 8.9e-34 147.9 97 76.3
Sabra09G0127600 Salix brachista HOM05D006639 ORTHO05D008339 8.9e-34 147.9 100 75.0
CANSAT56G0593 Cannabis sativa HOM05D006639 ORTHO05D008339 2.0e-33 146.7 103 69.9
CANSAT56G1587 Cannabis sativa HOM05D006639 ORTHO05D008339 2.0e-33 146.7 103 69.9
TWI31G0153 Tripterygium wilfordii HOM05D006639 ORTHO05D008339 2.0e-33 146.7 103 72.8
TAR636G3315 Trochodendron aralioides HOM05D006639 ORTHO05D008339 2.0e-33 146.7 96 74.0
Medtr4g052950 Medicago truncatula HOM05D006639 ORTHO05D008339 3.4e-33 146.0 99 71.7
Glyma.11G183100 Glycine max HOM05D006639 ORTHO05D008339 4.4e-33 145.6 96 74.0
Lalb_Chr19g0136451 Lupinus albus HOM05D006639 ORTHO05D008339 9.9e-33 144.4 96 74.0
PSO384G2857 Papaver somniferum HOM05D006639 ORTHO05D008339 1.3e-32 144.1 97 74.2
Nn6g34885 Nelumbo nucifera HOM05D006639 ORTHO05D008339 2.2e-32 143.3 97 72.2
Oeu022427.1 Olea europaea HOM05D006639 ORTHO05D008339 2.2e-32 143.3 99 70.7
CSS0034800 Camellia sinensis var. sinensis HOM05D006639 ORTHO05D008339 2.9e-32 142.9 99 71.7
MBI17_g08336_MAGBIO Magnolia biondii HOM05D006639 ORTHO05D008339 2.9e-32 142.9 103 69.9
FvH4_3g24950 Fragaria vesca HOM05D006639 ORTHO05D008339 3.8e-32 142.5 105 69.5
Haze_23370 Corylus avellana HOM05D006639 ORTHO05D008339 4.9e-32 142.1 95 75.8
Sc12g0004540 Simmondsia chinensis HOM05D006639 ORTHO05D008339 4.9e-32 142.1 96 74.0
Cfa010012 Carpinus fangiana HOM05D006639 ORTHO05D008339 8.4e-32 141.4 95 75.8
FAN16G2085 Fragaria x ananassa HOM05D006639 ORTHO05D008339 8.4e-32 141.4 105 68.6
FAN21G1301 Fragaria x ananassa HOM05D006639 ORTHO05D008339 8.4e-32 141.4 105 68.6
RcHm_v2.0_Chr5g0044741 Rosa chinensis HOM05D006639 ORTHO05D008339 8.4e-32 141.4 96 75.0
GSVIVG01036120001 Vitis vinifera HOM05D006639 ORTHO05D008339 8.4e-32 141.4 150 53.3
Hund18759 Selenicereus undatus HOM05D006639 ORTHO05D008339 1.1e-31 141.0 108 70.4
VMungo1127G0544 Vigna mungo HOM05D006639 ORTHO05D008339 1.1e-31 141.0 97 71.1
Phvul.011G094600 Phaseolus vulgaris HOM05D006639 ORTHO05D008339 1.4e-31 140.6 99 68.7
Sed0014981 Sechium edule HOM05D006639 ORTHO05D008339 1.4e-31 140.6 92 72.8
FAN25G3607 Fragaria x ananassa HOM05D006639 ORTHO05D008339 1.9e-31 140.2 105 67.6
CiPaw.14G099800 Carya illinoinensis HOM05D006639 ORTHO05D008339 2.4e-31 139.8 97 72.2
Rhsim13G0112100 Rhododendron simsii HOM05D006639 ORTHO05D008339 4.1e-31 139.0 165 52.7
Ah.15g095860 Amaranthus hybridus HOM05D006639 ORTHO05D008339 9.2e-31 137.9 97 73.2
Aqoxy4G02766 Aquilegia oxysepala HOM05D006639 ORTHO05D008339 9.2e-31 137.9 110 64.5
HPP92_003216 Vanilla planifolia HOM05D006639 ORTHO05D008339 1.2e-30 137.5 114 61.4
HanXRQChr14g0438101 Helianthus annuus HOM05D006639 ORTHO05D008339 1.6e-30 137.1 99 70.7
ClCG02G022260 Citrullus lanatus HOM05D006639 ORTHO05D008339 2.7e-30 136.3 156 50.0
vmacro03320 Vaccinium macrocarpon HOM05D006639 ORTHO05D008339 2.7e-30 136.3 104 70.2
Prupe.6G130500 Prunus persica HOM05D006639 ORTHO05D008339 3.5e-30 136.0 100 72.0
Nitab4.5_0000755g0110 Nicotiana tabacum HOM05D006639 ORTHO05D008339 7.8e-30 134.8 93 69.9
Nitab4.5_0010969g0010 Nicotiana tabacum HOM05D006639 ORTHO05D008339 7.8e-30 134.8 93 69.9
CAN.G1524.3 Capsicum annuum HOM05D006639 ORTHO05D008339 1.0e-29 134.4 91 72.5
PGSC0003DMG400026357 Solanum tuberosum HOM05D006639 ORTHO05D008339 1.0e-29 134.4 93 69.9
Solyc11g068480.2 Solanum lycopersicum HOM05D006639 ORTHO05D008339 1.3e-29 134.0 93 69.9
Sopen11g027190 Solanum pennellii HOM05D006639 ORTHO05D008339 1.3e-29 134.0 93 69.9
Glyma.12G089400 Glycine max HOM05D006639 ORTHO05D008339 3.9e-29 132.5 95 68.4
Peaxi162Scf00040g00018 Petunia axillaris HOM05D006639 ORTHO05D008339 6.6e-29 131.7 105 65.7
CDE08G1389 Ceratophyllum demersum HOM05D006639 ORTHO05D008339 8.6e-29 131.3 155 46.5
Migut.D02442 Erythranthe guttata HOM05D006639 ORTHO05D008339 8.6e-29 131.3 103 63.1
QL01p012190 Quercus lobata HOM05D006639 ORTHO05D008339 8.6e-29 131.3 108 65.7
MSTRG.18760 Avicennia marina HOM05D006639 ORTHO05D008339 1.1e-28 131.0 104 62.5
DCAR_010346 Daucus carota HOM05D006639 ORTHO05D008339 1.1e-28 131.0 102 64.7
ATR0776G083 Amborella trichopoda HOM05D006639 ORTHO05D008339 1.5e-28 130.6 101 67.3
EL10Ac7g15828 Beta vulgaris HOM05D006639 ORTHO05D008339 1.5e-28 130.6 97 68.0
Oeu031474.1 Olea europaea HOM05D006639 ORTHO05D008339 1.5e-28 130.6 103 63.1
Lsat_1_v5_gn_2_59441 Lactuca sativa HOM05D006639 ORTHO05D008339 1.9e-28 130.2 103 66.0
Cc01_g09080 Coffea canephora HOM05D006639 ORTHO05D008339 2.5e-28 129.8 103 59.2
Zm00001eb308280 Zea mays HOM05D006639 ORTHO05D008339 5.6e-28 128.6 101 64.4
SGA_v2.0_scaffold22G09859 Striga asiatica HOM05D006639 ORTHO05D008339 1.2e-27 127.5 103 61.2
ECA238G3612 Erigeron canadensis HOM05D006639 ORTHO05D008339 1.6e-27 127.1 102 66.7
unitig_37.g12892 Utricularia gibba HOM05D006639 ORTHO05D008339 3.6e-27 125.9 102 58.8
FAN11G3713 Fragaria x ananassa HOM05D006639 ORTHO05D008339 4.7e-27 125.6 96 68.8
Atru.chr3.3238 Acer truncatum HOM05D006639 ORTHO05D008339 1.8e-26 123.6 88 67.0
Atru.BG.107.p Acer truncatum HOM05D006639 ORTHO05D008339 2.4e-26 123.2 83 67.5
MD11G1164600 Malus domestica HOM05D006639 ORTHO05D008339 3.1e-26 122.9 105 60.0
Os09g0568200 Oryza sativa ssp. japonica HOM05D006639 ORTHO05D008339 3.1e-26 122.9 100 61.0
SEGI_32267 Sequoiadendron giganteum HOM05D006639 ORTHO05D008339 8.9e-26 121.3 100 63.0
Lj2A946T24 Lonicera japonica HOM05D006639 ORTHO05D008339 1.2e-25 120.9 100 64.0
Lj2A964T5 Lonicera japonica HOM05D006639 ORTHO05D008339 3.4e-25 119.4 100 63.0
DCAR_006164 Daucus carota HOM05D006639 ORTHO05D008339 6.4e-24 115.2 88 63.6
Mapoly0105s0006 Marchantia polymorpha HOM05D006639 ORTHO05D008339 1.9e-23 113.6 102 54.9
SMO340G0007 Selaginella moellendorffii HOM05D006639 ORTHO05D008339 1.6e-22 110.5 96 55.2
AagrBONN_evm.TU.Sc2ySwM_362.1778 Anthoceros agrestis HOM05D006639 ORTHO05D008339 4.6e-22 109.0 102 52.9
Pp3c26_8280 Physcomitrium patens HOM05D006639 ORTHO05D008339 1.7e-21 107.1 97 56.7
MCO15G204 Micromonas commoda HOM05D006639 ORTHO05D008339 5.6e-20 102.1 105 53.3
PRCOL_00006285 Prasinoderma coloniale HOM05D006639 ORTHO05D008339 2.6e-17 93.2 97 47.4
ECA238G0189 Erigeron canadensis HOM05D006639 ORTHO05D008339 3.8e-16 89.4 74 62.2
Cre07.g341800 Chlamydomonas reinhardtii HOM05D006639 ORTHO05D008339 1.2e-14 84.3 100 44.0
Nn1g05220 Nelumbo nucifera HOM05D006639 ORTHO05D008339 3.4e-09 66.2 51 62.7
Nn1g05039 Nelumbo nucifera HOM05D006639 ORTHO05D008339 1.3e-08 64.3 49 63.3
Nn053s41924 Nelumbo nucifera HOM05D006639 ORTHO05D008339 2.2e-08 63.5 82 50.0
Nn1g05216 Nelumbo nucifera HOM05D006639 ORTHO05D008339 2.2e-08 63.5 82 50.0
Nn1g05215 Nelumbo nucifera HOM05D006639 ORTHO05D008339 4.9e-08 62.4 48 64.6
Lalb_Chr03g0028111 Lupinus albus HOM05D006639 ORTHO05D008339 7.1e-07 58.5 39 74.4
COL.COLO4_19857 Corchorus olitorius HOM05D006639 ORTHO05D008339 9.3e-07 58.2 35 77.1
AUR62009752 Chenopodium quinoa HOM05D006639 ORTHO05D008339 1.2e-06 57.8 47 57.4
Lsat_1_v5_gn_6_29620 Lactuca sativa HOM05D000297 ORTHO05D000193 1.6e-06 57.4 90 32.2


User provided reference genes

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