Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10849 Brassica carinata HOM05D003843 ORTHO05D000005 1.8e-156 555.8 268 100.0
C04p24530 Brassica napus HOM05D003843 ORTHO05D004646 5.7e-139 497.7 397 67.5
BolC4t23957H Brassica oleracea HOM05D000008 ORTHO05D000005 4.2e-97 358.6 324 61.7
BraA07t29511Z Brassica rapa HOM05D003843 ORTHO05D004646 3.2e-89 332.4 399 52.6
A07p17930 Brassica napus HOM05D003843 ORTHO05D004646 4.2e-89 332.0 399 52.4
BcaB01g03036 Brassica carinata HOM05D000008 ORTHO05D000005 3.3e-86 322.4 433 49.2
A03p26810 Brassica napus HOM05D003843 ORTHO05D004646 6.4e-82 308.1 437 48.3
BraA03t11894Z Brassica rapa HOM05D000008 ORTHO05D000005 8.4e-82 307.8 438 48.2
BcaC01g04914 Brassica carinata HOM05D000008 ORTHO05D000005 1.1e-81 307.4 434 48.2
BolC3t15558H Brassica oleracea HOM05D000008 ORTHO05D000005 1.1e-81 307.4 434 48.2
Sp4g08390 Schrenkiella parvula HOM05D000008 ORTHO05D000005 3.2e-81 305.8 430 47.2
BcaB02g10057 Brassica carinata HOM05D000537 ORTHO05D000005 4.5e-75 285.4 265 63.4
Thhalv10002011m.g Eutrema salsugineum HOM05D000008 ORTHO05D000005 2.3e-71 273.1 353 50.7
C03p32130 Brassica napus HOM05D003843 ORTHO05D004646 2.8e-69 266.2 357 50.1
AL4G20250 Arabidopsis lyrata HOM05D000008 ORTHO05D000005 6.9e-52 208.4 415 39.8
CARHR119140 Cardamine hirsuta HOM05D000008 ORTHO05D000005 5.5e-49 198.7 422 39.6
AT2G26960 Arabidopsis thaliana HOM05D000008 ORTHO05D000005 2.2e-45 186.8 352 40.9
Carub.0004s0744 Capsella rubella HOM05D000008 ORTHO05D000005 2.7e-40 169.9 360 39.7
AT2G26950 Arabidopsis thaliana HOM05D000008 ORTHO05D000005 8.6e-18 95.1 275 37.1
AL4G20230 Arabidopsis lyrata HOM05D000008 ORTHO05D000005 1.5e-17 94.4 313 33.5
TWI79G1764 Tripterygium wilfordii HOM05D000008 ORTHO05D000005 1.2e-11 74.7 224 34.4
THA.LOC104816958 Tarenaya hassleriana HOM05D000008 ORTHO05D000005 1.6e-11 74.3 238 33.6
Hund21948 Selenicereus undatus HOM05D000008 ORTHO05D000005 1.7e-10 70.9 236 31.8
QL01p020570 Quercus lobata HOM05D000008 ORTHO05D000005 3.9e-10 69.7 258 32.6
TWI31G0411 Tripterygium wilfordii HOM05D000008 ORTHO05D000005 5.0e-10 69.3 224 31.7
Manes.02G133900 Manihot esculenta HOM05D000008 ORTHO05D000005 5.6e-09 65.9 234 34.2
Hund07403 Selenicereus undatus HOM05D000008 ORTHO05D000005 9.5e-09 65.1 235 30.6
EL10Ac4g10053 Beta vulgaris HOM05D000008 ORTHO05D000005 1.2e-08 64.7 235 33.6
COL.COLO4_24930 Corchorus olitorius HOM05D000008 ORTHO05D000005 1.2e-08 64.7 199 33.7
arahy.Tifrunner.gnm1.ann1.BIYE54 Arachis hypogaea HOM05D000008 ORTHO05D000005 2.8e-08 63.5 225 31.1
Cpa.g.sc34.210 Carica papaya HOM05D000008 ORTHO05D000005 2.8e-08 63.5 231 31.2
arahy.Tifrunner.gnm1.ann1.4RT16T Arachis hypogaea HOM05D000008 ORTHO05D000005 8.0e-08 62.0 225 31.6
Lalb_Chr06g0166401 Lupinus albus HOM05D000008 ORTHO05D000005 8.0e-08 62.0 218 31.2
CiPaw.13G145300 Carya illinoinensis HOM05D000008 ORTHO05D000005 1.0e-07 61.6 229 31.4
GSVIVG01037362001 Vitis vinifera HOM05D000008 ORTHO05D000005 1.4e-07 61.2 182 36.3
Phvul.006G020200 Phaseolus vulgaris HOM05D000008 ORTHO05D000005 2.3e-07 60.5 240 29.2
CSS0029877 Camellia sinensis var. sinensis HOM05D000008 ORTHO05D000005 3.1e-07 60.1 194 31.4
Aa31LG6G2710 Aethionema arabicum HOM05D000008 ORTHO05D001304 4.0e-07 59.7 230 31.7
Duzib170G0879 Durio zibethinus HOM05D000008 ORTHO05D000005 6.8e-07 58.9 233 28.3
Atru.chr3.2941 Acer truncatum HOM05D000008 ORTHO05D000005 8.9e-07 58.5 191 34.6
AUR62000244 Chenopodium quinoa HOM05D000008 ORTHO05D000005 1.2e-06 58.2 261 30.7
Potri.009G018700 Populus trichocarpa HOM05D000008 ORTHO05D000005 1.5e-06 57.8 222 30.2
Gohir.A09G107900 Gossypium hirsutum HOM05D000008 ORTHO05D000005 5.8e-06 55.8 220 30.5
DCAR_006329 Daucus carota HOM05D000008 ORTHO05D000005 9.8e-06 55.1 234 29.9
Manes.01G175900 Manihot esculenta HOM05D000008 ORTHO05D000005 9.8e-06 55.1 120 40.8


User provided reference genes

Program Settings