Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10746 Brassica carinata HOM05D003560 ORTHO05D027224 1.8e-154 549.3 289 100.0
BcaC01g01140 Brassica carinata HOM05D003560 ORTHO05D004500 2.0e-121 439.5 328 75.0
C03p88520 Brassica napus HOM05D003560 ORTHO05D004500 2.0e-121 439.5 328 75.0
BolC3t21162H Brassica oleracea HOM05D003560 ORTHO05D004500 2.0e-121 439.5 328 75.0
A08p19080 Brassica napus HOM05D003560 ORTHO05D004500 6.4e-120 434.5 328 74.1
BraA08t33870Z Brassica rapa HOM05D003560 ORTHO05D004500 6.4e-120 434.5 328 74.1
C04p25450 Brassica napus HOM05D003560 ORTHO05D027224 1.6e-110 403.3 211 100.0
BolC4t24063H Brassica oleracea HOM05D003560 ORTHO05D027224 1.6e-110 403.3 211 100.0
Sp7g28660 Schrenkiella parvula HOM05D003560 ORTHO05D004500 1.1e-103 380.6 342 67.5
Thhalv10024256m.g Eutrema salsugineum HOM05D003560 ORTHO05D004500 1.8e-101 373.2 342 65.8
BcaNung04829 Brassica carinata HOM05D003560 ORTHO05D004500 1.7e-96 356.7 336 64.9
CARHR238630 Cardamine hirsuta HOM05D003560 ORTHO05D004500 7.1e-95 351.3 342 63.5
Carub.0007s0981 Capsella rubella HOM05D003560 ORTHO05D004500 6.7e-93 344.7 342 62.0
AT4G30790 Arabidopsis thaliana HOM05D003560 ORTHO05D004500 7.4e-92 341.3 339 61.7
A01p07380 Brassica napus HOM05D003560 ORTHO05D004500 8.2e-91 337.8 334 63.8
BraA01t00687Z Brassica rapa HOM05D003560 ORTHO05D004500 8.2e-91 337.8 334 63.8
BcaNung01560 Brassica carinata HOM05D003560 ORTHO05D004500 4.5e-89 332.0 333 62.2
BolC1t00801H Brassica oleracea HOM05D003560 ORTHO05D004500 5.5e-87 325.1 336 61.6
BcaC09g51868 Brassica carinata HOM05D003560 ORTHO05D004500 2.1e-86 323.2 336 61.3
C01p08140 Brassica napus HOM05D003560 ORTHO05D004500 2.1e-86 323.2 336 61.3
A03p60310 Brassica napus HOM05D003560 ORTHO05D004500 2.0e-81 306.6 327 59.0
BraA03t15073Z Brassica rapa HOM05D003560 ORTHO05D004500 1.4e-79 300.4 327 58.4
Aa31LG2G19610 Aethionema arabicum HOM05D003560 ORTHO05D004500 5.1e-77 292.0 338 54.7
BcaNung02741 Brassica carinata HOM05D003560 ORTHO05D004500 4.1e-74 282.3 326 56.7
C07p58220 Brassica napus HOM05D003560 ORTHO05D004500 5.3e-74 282.0 326 56.7
THA.LOC104815517 Tarenaya hassleriana HOM05D003560 ORTHO05D004500 7.0e-74 281.6 347 51.3
BolC7t46280H Brassica oleracea HOM05D003560 ORTHO05D004500 1.6e-70 270.4 325 55.4
THA.LOC104803549 Tarenaya hassleriana HOM05D003560 ORTHO05D004500 3.3e-68 262.7 346 50.9
THA.LOC104803909 Tarenaya hassleriana HOM05D003560 ORTHO05D004500 7.7e-65 251.5 344 49.4
Atru.chr7.14 Acer truncatum HOM05D003560 ORTHO05D004500 2.3e-48 196.8 358 40.8
Gohir.D05G008900 Gossypium hirsutum HOM05D003560 ORTHO05D004500 2.3e-48 196.8 356 40.7
Gorai.009G009100 Gossypium raimondii HOM05D003560 ORTHO05D004500 2.3e-48 196.8 356 40.7
COL.COLO4_05033 Corchorus olitorius HOM05D003560 ORTHO05D004500 5.0e-48 195.7 358 41.3
Gohir.A05G008100 Gossypium hirsutum HOM05D003560 ORTHO05D004500 5.0e-48 195.7 354 40.4
Haze_19142 Corylus avellana HOM05D003560 ORTHO05D004500 1.5e-47 194.1 352 39.5
MD04G1049500 Malus domestica HOM05D003560 ORTHO05D004500 1.6e-46 190.7 352 40.3
Thecc.09G153600 Theobroma cacao HOM05D003560 ORTHO05D004500 2.1e-46 190.3 356 39.9
Prupe.1G102400 Prunus persica HOM05D003560 ORTHO05D004500 3.6e-46 189.5 356 40.7
Manes.06G031700 Manihot esculenta HOM05D003560 ORTHO05D004500 6.1e-46 188.7 355 40.0
Duzib168G0378 Durio zibethinus HOM05D003560 ORTHO05D004500 1.8e-45 187.2 359 40.7
AL7G21340 Arabidopsis lyrata HOM05D003560 ORTHO05D004500 3.0e-45 186.4 279 46.6
Cfa020786 Carpinus fangiana HOM05D003560 ORTHO05D004500 4.0e-45 186.0 352 38.6
CiPaw.15G164500 Carya illinoinensis HOM05D003560 ORTHO05D004500 4.0e-45 186.0 358 38.0
BcaC01g00593 Brassica carinata HOM05D003560 ORTHO05D027224 8.9e-45 184.9 98 95.9
Ciclev10007284m.g Citrus clementina HOM05D003560 ORTHO05D004500 1.5e-44 184.1 351 39.9
Cpa.g.sc199.20 Carica papaya HOM05D003560 ORTHO05D004500 2.0e-44 183.7 356 39.3
Potri.006G180800 Populus trichocarpa HOM05D003560 ORTHO05D004500 2.6e-44 183.3 358 39.9
RcHm_v2.0_Chr4g0405611 Rosa chinensis HOM05D003560 ORTHO05D004500 1.3e-43 181.0 354 39.8
Nn8g40053 Nelumbo nucifera HOM05D003560 ORTHO05D004500 1.7e-43 180.6 357 37.8
FAN07G0247 Fragaria x ananassa HOM05D003560 ORTHO05D004500 4.9e-43 179.1 355 38.3
Dinv42820 Davidia involucrata HOM05D003560 ORTHO05D004500 1.4e-42 177.6 358 38.8
Dinv43280 Davidia involucrata HOM05D003560 ORTHO05D004500 1.4e-42 177.6 358 38.8
QL02p094176 Quercus lobata HOM05D003560 ORTHO05D004500 1.4e-42 177.6 358 37.7
TAR625G0571 Trochodendron aralioides HOM05D003560 ORTHO05D004500 1.8e-42 177.2 358 37.4
Duzib150G1559 Durio zibethinus HOM05D003560 ORTHO05D004500 2.4e-42 176.8 355 38.9
Sabra06G0137800 Salix brachista HOM05D003560 ORTHO05D004500 2.4e-42 176.8 358 39.4
FAN12G4167 Fragaria x ananassa HOM05D003560 ORTHO05D004500 5.4e-42 175.6 355 37.7
Potri.018G103000 Populus trichocarpa HOM05D003560 ORTHO05D004500 1.6e-41 174.1 356 38.2
FvH4_4g10150 Fragaria vesca HOM05D003560 ORTHO05D004500 2.0e-41 173.7 355 37.5
FAN17G2275 Fragaria x ananassa HOM05D003560 ORTHO05D004500 2.7e-41 173.3 355 37.5
FAN22G1868 Fragaria x ananassa HOM05D003560 ORTHO05D004500 4.5e-41 172.6 355 37.2
DCAR_009892 Daucus carota HOM05D003560 ORTHO05D004500 7.8e-41 171.8 354 36.7
FAN12G2950 Fragaria x ananassa HOM05D003560 ORTHO05D004500 1.0e-40 171.4 355 37.5
CiPaw.16G106900 Carya illinoinensis HOM05D003560 ORTHO05D004500 2.3e-40 170.2 358 38.5
CANSAT11G0384 Cannabis sativa HOM05D003560 ORTHO05D004500 2.9e-40 169.9 356 37.1
Rhsim01G0023800 Rhododendron simsii HOM05D003560 ORTHO05D004500 2.9e-40 169.9 353 39.7
vmacro13051 Vaccinium macrocarpon HOM05D003560 ORTHO05D004500 3.9e-40 169.5 352 39.8
Sabra18G0088600 Salix brachista HOM05D003560 ORTHO05D004500 1.1e-39 167.9 357 37.5
CSS0046771 Camellia sinensis var. sinensis HOM05D003560 ORTHO05D004500 1.5e-39 167.5 357 37.8
Duzib187G1514 Durio zibethinus HOM05D003560 ORTHO05D004500 1.9e-39 167.2 360 38.1
Hma1.2p1_1084F.1_g255280 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 3.3e-39 166.4 350 37.4
Hma1.2p1_0222F.1_g093890 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 4.3e-39 166.0 350 37.4
BcaC01g00592 Brassica carinata HOM05D003560 ORTHO05D004500 5.6e-39 165.6 92 97.8
Nn2g14025 Nelumbo nucifera HOM05D003560 ORTHO05D004500 7.3e-39 165.2 353 36.8
Phvul.003G153800 Phaseolus vulgaris HOM05D003560 ORTHO05D004500 7.3e-39 165.2 358 35.8
MD13G1257100 Malus domestica HOM05D003560 ORTHO05D004500 1.6e-38 164.1 361 38.0
Lj4g0007617 Lotus japonicus HOM05D003560 ORTHO05D004500 2.1e-38 163.7 356 36.8
TAR636G2626 Trochodendron aralioides HOM05D003560 ORTHO05D004500 1.4e-37 161.0 358 36.3
arahy.Tifrunner.gnm1.ann1.752C0V Arachis hypogaea HOM05D003560 ORTHO05D004500 1.8e-37 160.6 358 36.9
TWI34G0709 Tripterygium wilfordii HOM05D003560 ORTHO05D004500 5.2e-37 159.1 352 36.6
VMungo1215G0464 Vigna mungo HOM05D003560 ORTHO05D004500 6.8e-37 158.7 355 36.3
Actinidia20936 Actinidia chinensis HOM05D003560 ORTHO05D004500 8.9e-37 158.3 357 36.1
PSO063G7271 Papaver somniferum HOM05D003560 ORTHO05D004500 8.9e-37 158.3 346 36.1
TPR.G24844 Trifolium pratense HOM05D003560 ORTHO05D004500 2.0e-36 157.1 358 35.2
Glyma.17G071400 Glycine max HOM05D003560 ORTHO05D004500 4.4e-36 156.0 359 35.4
Cc06_g14510 Coffea canephora HOM05D003560 ORTHO05D004500 1.3e-35 154.5 356 36.0
TWI32G0440 Tripterygium wilfordii HOM05D003560 ORTHO05D004500 1.3e-35 154.5 355 35.2
Dinv41343 Davidia involucrata HOM05D003560 ORTHO05D004500 2.2e-35 153.7 358 36.3
Glyma.02G206500 Glycine max HOM05D003560 ORTHO05D004500 2.9e-35 153.3 358 35.2
ClCG02G014310 Citrullus lanatus HOM05D003560 ORTHO05D004500 3.7e-35 152.9 355 35.2
Medtr4g130370 Medicago truncatula HOM05D003560 ORTHO05D004500 3.7e-35 152.9 364 35.2
Ca_21152_v3 Cicer arietinum L. HOM05D003560 ORTHO05D004500 8.3e-35 151.8 358 34.6
Peaxi162Scf00563g00417 Petunia axillaris HOM05D003560 ORTHO05D004500 8.3e-35 151.8 354 35.6
PSO782G3416 Papaver somniferum HOM05D003560 ORTHO05D004500 1.4e-34 151.0 343 35.6
Lj9A721G57 Lonicera japonica HOM05D003560 ORTHO05D004500 3.2e-34 149.8 349 37.2
Lalb_Chr12g0198821 Lupinus albus HOM05D003560 ORTHO05D004500 9.2e-34 148.3 353 35.1
Sopen07g002100 Solanum pennellii HOM05D003560 ORTHO05D004500 1.2e-33 147.9 355 35.8
Sed0017470 Sechium edule HOM05D003560 ORTHO05D004500 3.5e-33 146.4 348 35.9
MSTRG.19664 Avicennia marina HOM05D003560 ORTHO05D004500 4.6e-33 146.0 350 35.7
Eucgr.C00241 Eucalyptus grandis HOM05D003560 ORTHO05D004500 4.6e-33 146.0 356 34.3
Solyc07g005970.3 Solanum lycopersicum HOM05D003560 ORTHO05D004500 1.0e-32 144.8 360 35.0
Nitab4.5_0006744g0010 Nicotiana tabacum HOM05D003560 ORTHO05D004500 1.7e-32 144.1 356 35.7
PGSC0003DMG400011153 Solanum tuberosum HOM05D003560 ORTHO05D004500 1.7e-32 144.1 360 34.4
MELO3C004116.2 Cucumis melo HOM05D003560 ORTHO05D004500 2.3e-32 143.7 355 34.4
CsaV3_2G007690 Cucumis sativus L. HOM05D003560 ORTHO05D004500 2.3e-32 143.7 355 34.4
SalBow1G5562 Salvia bowleyana HOM05D003560 ORTHO05D004500 2.3e-32 143.7 349 35.2
Nitab4.5_0001036g0120 Nicotiana tabacum HOM05D003560 ORTHO05D004500 8.6e-32 141.7 352 34.7
Psat7g006640 Pisum sativum HOM05D003560 ORTHO05D004500 8.6e-32 141.7 360 33.6
SGA_v2.0_scaffold265G46080 Striga asiatica HOM05D003560 ORTHO05D004500 8.6e-32 141.7 332 34.6
PGR102G2861 Punica granatum HOM05D003560 ORTHO05D004500 1.9e-31 140.6 357 35.3
SalBow1G1777 Salvia bowleyana HOM05D003560 ORTHO05D004500 5.6e-31 139.0 352 34.1
CAN.G1190.4 Capsicum annuum HOM05D003560 ORTHO05D004500 9.5e-31 138.3 350 34.0
SGA_v2.0_scaffold45G17008 Striga asiatica HOM05D003560 ORTHO05D004500 9.5e-31 138.3 316 35.4
Aqoxy7G03346 Aquilegia oxysepala HOM05D003560 ORTHO05D004500 2.1e-30 137.1 353 34.0
Hma1.2p1_0222F.1_g093876 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 2.8e-30 136.7 324 36.4
Hma1.2p1_0222F.1_g093910 Hydrangea macrophylla HOM05D003560 ORTHO05D004500 2.8e-30 136.7 324 36.4
Lalb_Chr13g0300691 Lupinus albus HOM05D003560 ORTHO05D004500 3.6e-30 136.3 350 34.6
Sed0019076 Sechium edule HOM05D003560 ORTHO05D004500 3.6e-30 136.3 354 34.7
arahy.Tifrunner.gnm1.ann1.IP23DV Arachis hypogaea HOM05D003560 ORTHO05D004500 1.4e-29 134.4 291 36.8
vmacro06053 Vaccinium macrocarpon HOM05D003560 ORTHO05D004500 1.8e-29 134.0 351 33.6
Rhsim03G0259200 Rhododendron simsii HOM05D003560 ORTHO05D004500 3.1e-29 133.3 352 33.0
ECA234G2881 Erigeron canadensis HOM05D003560 ORTHO05D004500 8.9e-29 131.7 322 35.7
MBI14_g08698_MAGBIO Magnolia biondii HOM05D003560 ORTHO05D004500 2.0e-28 130.6 353 36.3
AUR62028380 Chenopodium quinoa HOM05D003560 ORTHO05D004500 3.4e-28 129.8 344 33.1
Hund08956 Selenicereus undatus HOM05D003560 ORTHO05D004500 7.5e-28 128.6 345 32.5
PGR114G0002 Punica granatum HOM05D003560 ORTHO05D004500 4.9e-27 125.9 342 34.5
PGR142G1236 Punica granatum HOM05D003560 ORTHO05D004500 4.9e-27 125.9 342 34.5
Sc14g0000980 Simmondsia chinensis HOM05D003560 ORTHO05D004500 6.4e-27 125.6 343 31.2
EL10Ac8g18909 Beta vulgaris HOM05D003560 ORTHO05D004500 2.4e-26 123.6 344 32.6
AUR62025371 Chenopodium quinoa HOM05D003560 ORTHO05D004500 2.4e-26 123.6 344 32.3
C04p25460 Brassica napus HOM05D003560 ORTHO05D021703 3.2e-26 123.2 90 75.6
BolC4t24064H Brassica oleracea HOM05D003560 ORTHO05D021703 3.2e-26 123.2 90 75.6
Migut.J01389 Erythranthe guttata HOM05D003560 ORTHO05D004500 4.1e-26 122.9 333 32.7
GSVIVG01023682001 Vitis vinifera HOM05D003560 ORTHO05D004500 6.0e-25 119.0 343 30.3
C03p39530 Brassica napus HOM05D003560 ORTHO05D021703 2.3e-24 117.1 90 72.2
HanXRQChr10g0307611 Helianthus annuus HOM05D003560 ORTHO05D004500 2.3e-24 117.1 322 34.5
ATR0749G018 Amborella trichopoda HOM05D003560 ORTHO05D004500 8.6e-24 115.2 361 31.3
HanXRQChr12g0357781 Helianthus annuus HOM05D003560 ORTHO05D004500 1.1e-23 114.8 325 33.2
Lsat_1_v5_gn_5_89080 Lactuca sativa HOM05D003560 ORTHO05D004500 1.1e-23 114.8 259 34.0
BcaC01g00594 Brassica carinata HOM05D003560 ORTHO05D021703 1.5e-23 114.4 90 72.2
DCAR_020090 Daucus carota HOM05D003560 ORTHO05D004500 5.6e-23 112.5 354 32.5
C03p39520 Brassica napus HOM05D003560 ORTHO05D021703 7.3e-23 112.1 90 71.1
ECA236G1776 Erigeron canadensis HOM05D003560 ORTHO05D004500 7.3e-23 112.1 305 32.5
unitig_37.g12751 Utricularia gibba HOM05D003560 ORTHO05D004500 2.1e-22 110.5 345 29.9
MBI14_g31376_MAGBIO Magnolia biondii HOM05D003560 ORTHO05D004500 2.3e-21 107.1 255 36.5
CDE02G1528 Ceratophyllum demersum HOM05D003560 ORTHO05D004500 4.0e-21 106.3 348 29.0
Lsat_1_v5_gn_8_64740 Lactuca sativa HOM05D003560 ORTHO05D004500 1.5e-20 104.4 311 32.8
Ah.09g228690 Amaranthus hybridus HOM05D003560 ORTHO05D004500 4.4e-20 102.8 349 28.7
HanXRQChr05g0141571 Helianthus annuus HOM05D003560 ORTHO05D004500 4.4e-20 102.8 254 36.2
HPP92_021904 Vanilla planifolia HOM05D003560 ORTHO05D004500 1.2e-17 94.7 374 27.8
Os02g0179800 Oryza sativa ssp. japonica HOM05D003560 ORTHO05D004500 3.0e-16 90.1 359 28.7
Zm00001eb233940 Zea mays HOM05D003560 ORTHO05D004500 8.6e-16 88.6 357 27.5
TPR.G131 Trifolium pratense HOM05D003560 ORTHO05D004500 1.2e-14 84.7 150 40.0
SMO301G0012 Selaginella moellendorffii HOM05D003560 ORTHO05D004500 3.6e-14 83.2 320 28.4
Zm00001eb206680 Zea mays HOM05D003560 ORTHO05D004500 4.7e-14 82.8 357 26.9
Ah.14g084380 Amaranthus hybridus HOM05D003560 ORTHO05D004500 6.2e-14 82.4 278 30.9
SEGI_31223 Sequoiadendron giganteum HOM05D003560 ORTHO05D004500 8.1e-14 82.0 368 29.1
Oeu024893.2 Olea europaea HOM05D003560 ORTHO05D004500 1.7e-11 74.3 178 34.8
CDE05G3326 Ceratophyllum demersum HOM05D003560 ORTHO05D004500 1.1e-10 71.6 348 25.9
Pp3c22_15890 Physcomitrium patens HOM05D003560 ORTHO05D004500 5.1e-08 62.8 286 24.8
AagrBONN_evm.TU.Sc2ySwM_344.4294 Anthoceros agrestis HOM05D003560 ORTHO05D004500 2.5e-07 60.5 296 28.0
Pp3c19_12090 Physcomitrium patens HOM05D003560 ORTHO05D004500 5.6e-07 59.3 284 24.6
Mapoly0041s0089 Marchantia polymorpha HOM05D003560 ORTHO05D004500 7.3e-07 58.9 366 26.2
VMungo1127G1083 Vigna mungo HOM05D003560 ORTHO05D021703 6.2e-06 55.8 52 53.8


User provided reference genes

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