Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10665 Brassica carinata HOM05D005881 ORTHO05D007298 1.3e-40 169.1 76 100.0
C04p26430 Brassica napus HOM05D005881 ORTHO05D007298 2.4e-26 121.7 58 89.7
BolC4t24162H Brassica oleracea HOM05D005881 ORTHO05D007298 2.4e-26 121.7 58 89.7
CARHR227780 Cardamine hirsuta HOM05D005881 ORTHO05D007298 2.8e-22 108.2 73 71.2
Aa31LG6G3200 Aethionema arabicum HOM05D005881 ORTHO05D007298 4.7e-22 107.5 73 69.9
AL3G11760 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 1.4e-21 105.9 73 68.5
AL7G32920 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 1.4e-21 105.9 73 68.5
AT4G21192 Arabidopsis thaliana HOM05D005881 ORTHO05D007298 1.4e-21 105.9 73 68.5
Thhalv10026658m.g Eutrema salsugineum HOM05D005881 ORTHO05D007298 2.3e-21 105.1 73 68.5
Sp7g19280 Schrenkiella parvula HOM05D005881 ORTHO05D007298 2.3e-21 105.1 73 68.5
Carub.0007s2023 Capsella rubella HOM05D005881 ORTHO05D007298 8.9e-21 103.2 73 67.1
BcaC01g00708 Brassica carinata HOM05D005881 ORTHO05D007298 1.5e-20 102.4 73 65.8
C03p83470 Brassica napus HOM05D005881 ORTHO05D007298 1.5e-20 102.4 73 65.8
BolC3t20627H Brassica oleracea HOM05D005881 ORTHO05D007298 1.5e-20 102.4 73 65.8
BraA03t14343Z Brassica rapa HOM05D005881 ORTHO05D007298 1.5e-20 102.4 73 68.5
BraA08t33500Z Brassica rapa HOM05D005881 ORTHO05D007298 1.5e-20 102.4 73 65.8
BcaNung00865 Brassica carinata HOM05D005881 ORTHO05D007298 3.4e-20 101.3 73 67.1
A03p52690 Brassica napus HOM05D005881 ORTHO05D007298 3.4e-20 101.3 73 67.1
C07p51120 Brassica napus HOM05D005881 ORTHO05D007298 3.4e-20 101.3 73 67.1
BolC7t45612H Brassica oleracea HOM05D005881 ORTHO05D007298 3.4e-20 101.3 73 67.1
Atru.chr6.354 Acer truncatum HOM05D005881 ORTHO05D007298 4.4e-20 100.9 73 65.8
BcaC06g30655 Brassica carinata HOM05D005881 ORTHO05D007298 4.4e-20 100.9 73 67.1
Ciclev10002996m.g Citrus clementina HOM05D005881 ORTHO05D007298 1.3e-19 99.4 49 85.7
Os02g0560450 Oryza sativa ssp. japonica HOM05D005881 ORTHO05D007298 8.3e-19 96.7 74 60.8
Potri.004G227500 Populus trichocarpa HOM05D005881 ORTHO05D007298 1.1e-18 96.3 73 61.6
Sed0016149 Sechium edule HOM05D005881 ORTHO05D007298 1.1e-18 96.3 73 61.6
Haze_07862 Corylus avellana HOM05D005881 ORTHO05D007298 1.4e-18 95.9 73 60.3
Duzib052G1237 Durio zibethinus HOM05D005881 ORTHO05D007298 1.9e-18 95.5 73 61.6
Lj6g0001713 Lotus japonicus HOM05D005881 ORTHO05D007298 1.9e-18 95.5 73 58.9
AUR62022918 Chenopodium quinoa HOM05D005881 ORTHO05D007298 2.4e-18 95.1 73 61.6
Cc02_g34860 Coffea canephora HOM05D005881 ORTHO05D007298 2.4e-18 95.1 76 59.2
Manes.07G028000 Manihot esculenta HOM05D005881 ORTHO05D007298 2.4e-18 95.1 73 60.3
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 3.2e-18 94.7 57 68.4
Gohir.1Z049413 Gossypium hirsutum HOM05D005881 ORTHO05D007298 3.2e-18 94.7 73 61.6
Gohir.1Z049621 Gossypium hirsutum HOM05D005881 ORTHO05D007298 3.2e-18 94.7 73 61.6
Gorai.002G000700 Gossypium raimondii HOM05D005881 ORTHO05D007298 3.2e-18 94.7 73 61.6
PGR042G2514 Punica granatum HOM05D005881 ORTHO05D007298 3.2e-18 94.7 73 61.6
EL10Ac2g04867 Beta vulgaris HOM05D005881 ORTHO05D007298 4.1e-18 94.4 73 61.6
CSS0041173 Camellia sinensis var. sinensis HOM05D005881 ORTHO05D007298 4.1e-18 94.4 77 54.5
Gohir.D10G000200 Gossypium hirsutum HOM05D005881 ORTHO05D007298 4.1e-18 94.4 73 60.3
TWI79G0203 Tripterygium wilfordii HOM05D005881 ORTHO05D007298 4.1e-18 94.4 49 79.6
Cfa026039 Carpinus fangiana HOM05D005881 ORTHO05D007298 5.4e-18 94.0 73 58.9
ClCG10G007340 Citrullus lanatus HOM05D005881 ORTHO05D007298 5.4e-18 94.0 73 58.9
DCAR_001713 Daucus carota HOM05D005881 ORTHO05D007298 5.4e-18 94.0 48 79.2
THA.LOC104812941 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 5.4e-18 94.0 49 77.6
CANSAT54G2245 Cannabis sativa HOM05D005881 ORTHO05D007298 7.1e-18 93.6 73 58.9
Manes.10G110680 Manihot esculenta HOM05D005881 ORTHO05D007298 7.1e-18 93.6 48 79.2
Phvul.006G085400 Phaseolus vulgaris HOM05D005881 ORTHO05D007298 7.1e-18 93.6 53 69.8
QL02p103034 Quercus lobata HOM05D005881 ORTHO05D007298 7.1e-18 93.6 48 79.2
Thecc.02G037800 Theobroma cacao HOM05D005881 ORTHO05D007298 7.1e-18 93.6 73 60.3
CDE08G1319 Ceratophyllum demersum HOM05D005881 ORTHO05D007298 9.2e-18 93.2 73 57.5
Gohir.1Z049675 Gossypium hirsutum HOM05D005881 ORTHO05D007298 9.2e-18 93.2 49 79.6
Gohir.A01G000500 Gossypium hirsutum HOM05D005881 ORTHO05D007298 9.2e-18 93.2 73 60.3
Lsat_1_v5_gn_9_121521 Lactuca sativa HOM05D005881 ORTHO05D007298 9.2e-18 93.2 49 75.5
Lalb_Chr18g0053871 Lupinus albus HOM05D005881 ORTHO05D007298 9.2e-18 93.2 73 57.5
PSO170G3105 Papaver somniferum HOM05D005881 ORTHO05D007298 9.2e-18 93.2 49 75.5
PSO407G0212 Papaver somniferum HOM05D005881 ORTHO05D007298 9.2e-18 93.2 49 75.5
Prupe.1G582900 Prunus persica HOM05D005881 ORTHO05D007298 9.2e-18 93.2 49 75.5
QL02p102397 Quercus lobata HOM05D005881 ORTHO05D007298 9.2e-18 93.2 48 79.2
arahy.Tifrunner.gnm1.ann1.8HB0N1 Arachis hypogaea HOM05D005881 ORTHO05D007298 1.2e-17 92.8 73 56.2
Eucgr.K01416 Eucalyptus grandis HOM05D005881 ORTHO05D007298 1.2e-17 92.8 48 81.2
FvH4_5g29590 Fragaria vesca HOM05D005881 ORTHO05D007298 1.2e-17 92.8 73 58.9
THA.LOC104812459 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 1.2e-17 92.8 49 77.6
Haze_12831 Corylus avellana HOM05D005881 ORTHO05D007298 1.6e-17 92.4 73 58.9
FAN18G0030 Fragaria x ananassa HOM05D005881 ORTHO05D007298 1.6e-17 92.4 51 72.5
Solyc01g103190.3 Solanum lycopersicum HOM05D005881 ORTHO05D007298 1.6e-17 92.4 73 60.3
Sopen01g045600 Solanum pennellii HOM05D005881 ORTHO05D007298 1.6e-17 92.4 73 60.3
Sopen01g045620 Solanum pennellii HOM05D005881 ORTHO05D007298 1.6e-17 92.4 73 60.3
Hma1.2p1_0052F.1_g029890 Hydrangea macrophylla HOM05D005881 ORTHO05D007298 2.1e-17 92.0 49 79.6
PSO017G1314 Papaver somniferum HOM05D005881 ORTHO05D007298 2.1e-17 92.0 49 75.5
RcHm_v2.0_Chr7g0222581 Rosa chinensis HOM05D005881 ORTHO05D007298 2.1e-17 92.0 49 75.5
Sc07g0003630 Simmondsia chinensis HOM05D005881 ORTHO05D007298 2.1e-17 92.0 49 77.6
CiPaw.06G026000 Carya illinoinensis HOM05D005881 ORTHO05D007298 2.7e-17 91.7 48 77.1
PGSC0003DMG400024874 Solanum tuberosum HOM05D005881 ORTHO05D007298 2.7e-17 91.7 51 74.5
SGA_v2.0_scaffold254G45257 Striga asiatica HOM05D005881 ORTHO05D007298 2.7e-17 91.7 48 77.1
vmacro19838 Vaccinium macrocarpon HOM05D005881 ORTHO05D007298 2.7e-17 91.7 49 75.5
ECA246G1780 Erigeron canadensis HOM05D005881 ORTHO05D007298 3.5e-17 91.3 49 73.5
Medtr3g064240 Medicago truncatula HOM05D005881 ORTHO05D007298 3.5e-17 91.3 48 77.1
TPR.G37331 Trifolium pratense HOM05D005881 ORTHO05D007298 3.5e-17 91.3 48 75.0
arahy.Tifrunner.gnm1.ann1.6Q1IVA Arachis hypogaea HOM05D005881 ORTHO05D007298 4.6e-17 90.9 73 56.2
arahy.Tifrunner.gnm1.ann1.GZL8T6 Arachis hypogaea HOM05D005881 ORTHO05D007298 4.6e-17 90.9 73 56.2
CAN.G855.36 Capsicum annuum HOM05D005881 ORTHO05D007298 4.6e-17 90.9 73 57.5
MD17G1268300 Malus domestica HOM05D005881 ORTHO05D007298 4.6e-17 90.9 73 56.2
Nitab4.5_0001057g0140 Nicotiana tabacum HOM05D005881 ORTHO05D007298 4.6e-17 90.9 73 57.5
Peaxi162Scf00450g00736 Petunia axillaris HOM05D005881 ORTHO05D007298 4.6e-17 90.9 73 57.5
Migut.N00857 Erythranthe guttata HOM05D005881 ORTHO05D007298 6.0e-17 90.5 49 75.5
Migut.O00861 Erythranthe guttata HOM05D005881 ORTHO05D007298 6.0e-17 90.5 49 75.5
Oeu010217.3 Olea europaea HOM05D005881 ORTHO05D007298 6.0e-17 90.5 49 75.5
Oeu003780.1 Olea europaea HOM05D005881 ORTHO05D007298 7.8e-17 90.1 73 57.5
Aqoxy1G00234 Aquilegia oxysepala HOM05D005881 ORTHO05D007298 1.0e-16 89.7 48 75.0
Glyma.11G208400 Glycine max HOM05D005881 ORTHO05D007298 1.3e-16 89.4 48 72.9
Glyma.18G045400 Glycine max HOM05D005881 ORTHO05D007298 1.3e-16 89.4 48 72.9
HanXRQChr17g0543881 Helianthus annuus HOM05D005881 ORTHO05D007298 1.3e-16 89.4 49 73.5
MD09G1270200 Malus domestica HOM05D005881 ORTHO05D007298 1.3e-16 89.4 49 71.4
TAR623G1668 Trochodendron aralioides HOM05D005881 ORTHO05D007298 1.7e-16 89.0 48 77.1
MBI06_g43454_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 2.3e-16 88.6 48 77.1
GSVIVG01023198001 Vitis vinifera HOM05D005881 ORTHO05D007298 3.9e-16 87.8 49 73.5
Ah.00g001370 Amaranthus hybridus HOM05D005881 ORTHO05D007298 6.6e-16 87.0 49 73.5
Nn2g11943 Nelumbo nucifera HOM05D005881 ORTHO05D007298 6.6e-16 87.0 73 56.2
arahy.Tifrunner.gnm1.ann1.VTJ29R Arachis hypogaea HOM05D005881 ORTHO05D007298 8.6e-16 86.7 78 52.6
EL10Ac4g07780 Beta vulgaris HOM05D000065 ORTHO05D002939 5.6e-15 84.0 49 73.5
EL10Ac4g07877 Beta vulgaris HOM05D005881 ORTHO05D007298 5.6e-15 84.0 49 73.5
Gohir.1Z049575 Gossypium hirsutum HOM05D005881 ORTHO05D007298 5.6e-15 84.0 73 57.5
Gorai.002G000900 Gossypium raimondii HOM05D005881 ORTHO05D007298 5.6e-15 84.0 73 57.5
Nitab4.5_0002546g0080 Nicotiana tabacum HOM05D005881 ORTHO05D007298 2.1e-14 82.0 87 48.3
EL10Ac7g16281 Beta vulgaris HOM05D005881 ORTHO05D007298 6.8e-13 77.0 44 72.7
COL.COLO4_17857 Corchorus olitorius HOM05D005881 ORTHO05D007298 1.2e-12 76.3 63 58.7
Gohir.1Z049313 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.6e-12 75.1 73 52.1
Mapoly0035s0117 Marchantia polymorpha HOM05D005881 ORTHO05D007298 4.4e-12 74.3 48 60.4
CsaV3_3G006580 Cucumis sativus L. HOM05D005881 ORTHO05D007298 5.8e-12 73.9 62 54.8
Gohir.A01G140426 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.9e-11 71.6 62 54.8
A08p15220 Brassica napus HOM05D005881 ORTHO05D007298 3.8e-11 71.2 66 54.5
Zm00001eb244030 Zea mays HOM05D005881 ORTHO05D007298 4.9e-11 70.9 38 76.3
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 1.1e-10 69.7 45 62.2
Haze_20435 Corylus avellana HOM05D005881 ORTHO05D007298 2.4e-10 68.6 60 53.3
Gohir.1Z049721 Gossypium hirsutum HOM05D005881 ORTHO05D007298 7.1e-10 67.0 64 54.7
Cfa026049 Carpinus fangiana HOM05D005881 ORTHO05D007298 9.2e-10 66.6 62 50.0
Gorai.011G000600 Gossypium raimondii HOM05D005881 ORTHO05D007298 9.2e-10 66.6 64 53.1
SGA_v2.0_scaffold131G34400 Striga asiatica HOM05D005881 ORTHO05D007298 1.2e-09 66.2 37 67.6
Haze_10008 Corylus avellana HOM05D000045 ORTHO05D001346 2.7e-09 65.1 37 67.6
AagrBONN_evm.TU.Sc2ySwM_117.2390 Anthoceros agrestis HOM05D005881 ORTHO05D007298 3.5e-09 64.7 49 51.0
Cfa021151 Carpinus fangiana HOM05D005881 ORTHO05D007298 3.5e-09 64.7 60 50.0
Nitab4.5_0001057g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 3.5e-09 64.7 60 51.7
Haze_10676 Corylus avellana HOM05D005881 ORTHO05D007298 4.6e-09 64.3 35 71.4
MELO3C032219.2 Cucumis melo HOM05D005881 ORTHO05D007298 1.0e-08 63.2 34 70.6
Rhsim11G0129900 Rhododendron simsii HOM05D005881 ORTHO05D007298 1.0e-08 63.2 36 66.7
unitig_22.g6105 Utricularia gibba HOM05D005881 ORTHO05D007298 1.0e-08 63.2 37 64.9
Haze_09300 Corylus avellana HOM05D005881 ORTHO05D007298 1.3e-08 62.8 35 71.4
MBI06_g45555_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 1.1e-07 59.7 34 70.6
Rhsim06G0200500 Rhododendron simsii HOM05D005881 ORTHO05D007298 7.3e-07 57.0 36 61.1
arahy.Tifrunner.gnm1.ann1.0A1TZX Arachis hypogaea HOM05D001400 ORTHO05D016394 1.2e-06 56.2 36 63.9


User provided reference genes

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