Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 4.6e-135 484.6 248 100.0
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 9.1e-131 470.3 249 98.0
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 1.5e-109 399.8 271 81.2
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 9.7e-109 397.1 271 81.2
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 1.7e-108 396.4 248 86.3
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 1.8e-107 392.9 273 80.6
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 8.5e-105 384.0 271 79.7
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 4.2e-104 381.7 240 86.7
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 5.5e-104 381.3 271 79.3
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 2.1e-103 379.4 246 85.4
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 8.8e-102 374.0 258 81.0
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 2.6e-101 372.5 258 80.6
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 5.7e-101 371.3 258 80.2
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 5.7e-101 371.3 258 80.2
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 7.5e-101 370.9 258 80.6
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 1.3e-100 370.2 258 80.2
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 1.4e-99 366.7 258 79.5
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 7.0e-99 364.4 258 79.1
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 2.9e-97 359.0 258 77.1
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 2.5e-96 355.9 258 77.5
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 3.3e-96 355.5 258 76.4
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 5.5e-96 354.8 258 76.7
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 4.1e-91 338.6 261 72.8
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 9.2e-91 337.4 258 73.3
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 1.2e-90 337.0 258 73.6
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 1.2e-90 337.0 258 73.6
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 1.2e-90 337.0 258 73.6
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 1.8e-86 323.2 274 70.8
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 4.0e-86 322.0 300 64.3
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 3.5e-82 308.9 256 65.6
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 6.6e-81 304.7 256 65.6
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 6.6e-81 304.7 256 65.6
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 8.6e-81 304.3 255 65.5
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 1.5e-80 303.5 256 64.8
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 1.9e-80 303.1 256 65.6
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 2.5e-80 302.8 260 65.4
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 3.3e-80 302.4 258 63.6
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 7.3e-80 301.2 258 64.3
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 1.2e-79 300.4 229 76.4
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 1.2e-79 300.4 258 64.3
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 4.7e-79 298.5 258 63.6
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 4.7e-79 298.5 258 63.6
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 8.0e-79 297.7 258 62.8
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 1.4e-78 297.0 258 62.0
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 1.4e-78 297.0 258 64.0
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 1.8e-78 296.6 258 63.6
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 2.3e-78 296.2 258 64.7
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 2.3e-78 296.2 258 62.8
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 3.1e-78 295.8 258 63.2
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 3.1e-78 295.8 258 63.2
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 3.1e-78 295.8 258 63.2
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 4.0e-78 295.4 258 61.6
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 5.2e-78 295.0 258 63.2
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 6.8e-78 294.7 258 63.2
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 1.2e-77 293.9 258 62.8
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 1.2e-77 293.9 258 62.8
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.5e-77 293.5 258 62.8
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.5e-77 293.5 258 62.8
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 2.0e-77 293.1 258 62.8
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 2.0e-77 293.1 258 60.9
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 3.4e-77 292.4 258 63.2
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 5.8e-77 291.6 258 62.4
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 9.8e-77 290.8 258 62.4
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.3e-76 290.4 258 62.4
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 1.7e-76 290.0 258 62.0
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 1.7e-76 290.0 258 62.0
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 1.7e-76 290.0 255 62.7
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 2.2e-76 289.7 256 62.9
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 2.2e-76 289.7 256 63.3
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 2.2e-76 289.7 258 61.2
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 2.9e-76 289.3 258 61.6
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 3.7e-76 288.9 258 62.8
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 6.4e-76 288.1 258 63.6
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 8.3e-76 287.7 254 63.0
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 1.1e-75 287.3 258 62.0
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 1.4e-75 287.0 272 59.2
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.4e-75 287.0 269 60.2
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 2.4e-75 286.2 257 61.9
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 7.0e-75 284.6 254 62.6
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 9.2e-75 284.3 255 62.0
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 2.1e-74 283.1 288 56.6
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 2.7e-74 282.7 257 59.5
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 3.5e-74 282.3 255 61.6
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 3.5e-74 282.3 258 60.5
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 4.6e-74 282.0 258 60.1
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 6.0e-74 281.6 258 58.9
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 1.7e-73 280.0 271 57.2
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 2.3e-73 279.6 253 62.8
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 3.0e-73 279.3 254 62.2
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 3.9e-73 278.9 253 61.7
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 3.9e-73 278.9 254 62.6
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 6.6e-73 278.1 258 60.1
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 1.1e-72 277.3 255 60.8
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 1.1e-72 277.3 255 60.8
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 1.5e-72 276.9 258 59.3
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 1.9e-72 276.6 262 58.4
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 2.5e-72 276.2 255 60.4
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 2.5e-72 276.2 254 61.0
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 2.5e-72 276.2 254 61.0
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 7.3e-72 274.6 255 60.4
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 2.1e-71 273.1 255 60.4
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 2.8e-71 272.7 254 60.6
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 6.2e-71 271.6 254 59.1
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 8.1e-71 271.2 258 58.9
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 1.1e-70 270.8 255 60.0
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 1.1e-70 270.8 258 58.9
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 4.0e-70 268.9 264 58.0
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 5.2e-70 268.5 253 58.9
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 1.2e-69 267.3 253 60.5
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 4.4e-69 265.4 235 67.7
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 9.9e-69 264.2 253 58.9
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 1.3e-68 263.8 258 57.0
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 8.3e-68 261.2 316 50.6
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 3.2e-67 259.2 256 56.6
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 3.5e-66 255.8 303 51.5
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 1.0e-65 254.2 253 57.7
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 1.7e-65 253.4 250 58.8
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 2.3e-65 253.1 254 56.7
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 1.9e-64 250.0 253 56.5
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 2.5e-64 249.6 281 56.9
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 5.6e-64 248.4 253 56.1
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 1.2e-63 247.3 350 45.1
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 2.8e-63 246.1 250 56.8
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 6.2e-63 245.0 252 54.4
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 1.4e-62 243.8 252 54.8
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 6.8e-62 241.5 141 90.8
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 4.9e-60 235.3 255 54.9
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 1.9e-59 233.4 214 61.7
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 1.0e-57 227.6 245 54.3
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 8.7e-57 224.6 254 49.2
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 1.5e-56 223.8 238 53.8
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 2.8e-55 219.5 245 51.8
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 3.6e-55 219.2 258 47.7
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 5.8e-53 211.8 253 50.6
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 1.7e-52 210.3 251 51.8
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.9e-51 206.8 144 72.9
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.9e-51 206.8 144 72.9
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 2.4e-51 206.5 247 49.0
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 2.4e-51 206.5 253 48.2
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 7.1e-51 204.9 248 49.2
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 2.7e-50 203.0 247 48.6
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 1.3e-47 194.1 144 69.4
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 4.8e-47 192.2 261 44.4
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 2.4e-46 189.9 256 45.3
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 4.2e-43 179.1 241 48.1
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.2e-42 177.6 235 47.2
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 4.6e-42 175.6 110 79.1
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 8.7e-41 171.4 245 46.1
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 4.2e-35 152.5 110 71.8
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 4.6e-34 149.1 92 85.9
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 8.7e-33 144.8 108 71.3
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 4.0e-30 136.0 109 63.3
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 6.9e-30 135.2 141 56.7
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 6.5e-28 128.6 133 54.9
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 5.5e-27 125.6 77 79.2
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.0e-25 121.3 101 68.3
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.9e-24 117.1 154 48.1
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 4.3e-24 115.9 102 62.7
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 2.2e-23 113.6 133 52.6
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 1.5e-21 107.5 104 55.8
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 2.6e-21 106.7 93 68.8
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 3.9e-17 92.8 243 31.3
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 6.7e-17 92.0 53 94.3
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 8.8e-17 91.7 53 92.5
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 8.8e-17 91.7 53 92.5
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 2.0e-16 90.5 53 92.5
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 2.0e-16 90.5 53 92.5
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.3e-15 87.8 72 58.3
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.3e-15 87.8 72 58.3
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 3.7e-15 86.3 51 90.2
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 4.8e-15 85.9 240 30.4
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 6.3e-15 85.5 70 61.4
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 8.2e-15 85.1 59 72.9
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 8.2e-15 85.1 68 61.8
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.4e-14 84.3 72 55.6
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 1.8e-14 84.0 271 27.3
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.8e-14 84.0 72 56.9
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 7.7e-13 78.6 63 63.5
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.3e-12 77.8 55 69.1
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 6.5e-12 75.5 51 74.5
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 1.4e-11 74.3 140 35.0
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 1.5e-08 64.3 55 61.8
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 9.7e-08 61.6 64 53.1
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 4.8e-07 59.3 40 75.0
Gohir.D03G082900 Gossypium hirsutum HOM05D002585 ORTHO05D002917 5.3e-06 55.8 52 51.9


User provided reference genes

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