Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10644 Brassica carinata HOM05D006958 ORTHO05D008814 6.8e-69 263.8 131 100.0
BcaB04g20216 Brassica carinata HOM05D006958 ORTHO05D008814 3.4e-44 181.8 198 56.6
BolC1t03593H Brassica oleracea HOM05D006958 ORTHO05D008814 4.4e-44 181.4 191 57.6
C01p36350 Brassica napus HOM05D006958 ORTHO05D008814 1.7e-43 179.5 190 57.4
Thhalv10023590m.g Eutrema salsugineum HOM05D006958 ORTHO05D008814 3.8e-43 178.3 192 55.2
Sp2g04980 Schrenkiella parvula HOM05D006958 ORTHO05D008814 3.8e-43 178.3 192 56.8
A01p28700 Brassica napus HOM05D006958 ORTHO05D008814 6.4e-43 177.6 190 56.8
BraA01t03033Z Brassica rapa HOM05D006958 ORTHO05D008814 6.4e-43 177.6 190 56.8
CARHR283790 Cardamine hirsuta HOM05D006958 ORTHO05D008814 9.3e-42 173.7 192 55.2
AL2G17470 Arabidopsis lyrata HOM05D006958 ORTHO05D008814 2.3e-40 169.1 192 55.2
AT1G59600 Arabidopsis thaliana HOM05D006958 ORTHO05D008814 3.9e-40 168.3 192 54.7
Carub.0002s0585 Capsella rubella HOM05D006958 ORTHO05D008814 3.9e-40 168.3 192 54.2
C04p26140 Brassica napus HOM05D006958 ORTHO05D008814 4.2e-34 148.3 96 81.2
BolC4t24190H Brassica oleracea HOM05D006958 ORTHO05D008814 4.2e-34 148.3 96 81.2
Aa31LG2G10550 Aethionema arabicum HOM05D006958 ORTHO05D008814 3.1e-29 132.1 142 54.9
THA.LOC104816754 Tarenaya hassleriana HOM05D006958 ORTHO05D008814 6.9e-29 131.0 206 43.7
RcHm_v2.0_Chr6g0309651 Rosa chinensis HOM05D006958 ORTHO05D008814 1.4e-26 123.2 174 44.8
TAR376G0445 Trochodendron aralioides HOM05D006958 ORTHO05D008814 3.2e-26 122.1 148 49.3
Duzib093G1923 Durio zibethinus HOM05D006958 ORTHO05D008814 2.1e-25 119.4 210 40.0
Gohir.D05G213600 Gossypium hirsutum HOM05D006958 ORTHO05D008814 2.1e-25 119.4 172 43.6
Gorai.009G220300 Gossypium raimondii HOM05D006958 ORTHO05D008814 2.7e-25 119.0 172 43.6
Thecc.08G088500 Theobroma cacao HOM05D006958 ORTHO05D008814 2.7e-25 119.0 147 47.6
arahy.Tifrunner.gnm1.ann1.JFD9T8 Arachis hypogaea HOM05D006958 ORTHO05D008814 3.5e-25 118.6 148 49.3
Dinv39219 Davidia involucrata HOM05D006958 ORTHO05D008814 3.5e-25 118.6 148 47.3
Ciclev10001733m.g Citrus clementina HOM05D006958 ORTHO05D008814 4.6e-25 118.2 168 44.6
FAN15G0662 Fragaria x ananassa HOM05D006958 ORTHO05D008814 7.9e-25 117.5 152 46.1
FAN27G0228 Fragaria x ananassa HOM05D006958 ORTHO05D008814 7.9e-25 117.5 152 46.1
Potri.002G118300 Populus trichocarpa HOM05D006958 ORTHO05D008814 7.9e-25 117.5 210 38.6
COL.COLO4_28503 Corchorus olitorius HOM05D006958 ORTHO05D008814 1.0e-24 117.1 174 43.1
Actinidia22696 Actinidia chinensis HOM05D006958 ORTHO05D008814 1.3e-24 116.7 148 47.3
Manes.18G046700 Manihot esculenta HOM05D006958 ORTHO05D008814 1.3e-24 116.7 148 46.6
Actinidia10201 Actinidia chinensis HOM05D006958 ORTHO05D008814 1.8e-24 116.3 148 47.3
GSVIVG01009341001 Vitis vinifera HOM05D006958 ORTHO05D008814 3.0e-24 115.5 150 46.0
Atru.chr13.835 Acer truncatum HOM05D006958 ORTHO05D008814 5.1e-24 114.8 150 45.3
Glyma.14G089018 Glycine max HOM05D006958 ORTHO05D008814 6.7e-24 114.4 141 48.2
TWI12G1073 Tripterygium wilfordii HOM05D006958 ORTHO05D008814 6.7e-24 114.4 150 44.7
VMungo0647G0836 Vigna mungo HOM05D006958 ORTHO05D008814 8.7e-24 114.0 141 48.2
Prupe.1G422600 Prunus persica HOM05D006958 ORTHO05D008814 1.1e-23 113.6 148 46.6
Rhsim06G0062400 Rhododendron simsii HOM05D006958 ORTHO05D008814 1.9e-23 112.8 148 45.9
Hund05299 Selenicereus undatus HOM05D006958 ORTHO05D008814 1.9e-23 112.8 214 39.7
FAN24G2490 Fragaria x ananassa HOM05D006958 ORTHO05D008814 3.3e-23 112.1 152 46.1
Gohir.A05G210300 Gossypium hirsutum HOM05D006958 ORTHO05D008814 4.3e-23 111.7 145 46.2
Ca_13215_v3 Cicer arietinum L. HOM05D006958 ORTHO05D008814 5.6e-23 111.3 146 46.6
Lalb_Chr14g0368181 Lupinus albus HOM05D006958 ORTHO05D008814 5.6e-23 111.3 148 45.3
FvH4_2g33060 Fragaria vesca HOM05D006958 ORTHO05D008814 9.6e-23 110.5 148 45.9
Cfa013775 Carpinus fangiana HOM05D006958 ORTHO05D008814 1.3e-22 110.2 149 43.6
Haze_22433 Corylus avellana HOM05D006958 ORTHO05D008814 1.3e-22 110.2 149 44.3
Sc02g0007890 Simmondsia chinensis HOM05D006958 ORTHO05D008814 1.6e-22 109.8 178 42.1
TPR.G37796 Trifolium pratense HOM05D006958 ORTHO05D008814 3.7e-22 108.6 203 39.4
Eucgr.F02250 Eucalyptus grandis HOM05D006958 ORTHO05D008814 1.8e-21 106.3 148 44.6
MD15G1069100 Malus domestica HOM05D006958 ORTHO05D008814 1.8e-21 106.3 149 45.6
CSS0020437 Camellia sinensis var. sinensis HOM05D006958 ORTHO05D008814 2.4e-21 105.9 148 44.6
MSTRG.24376 Avicennia marina HOM05D006958 ORTHO05D008814 3.1e-21 105.5 148 44.6
CANSAT25G3409 Cannabis sativa HOM05D006958 ORTHO05D008814 3.1e-21 105.5 148 41.9
Cpa.g.sc142.28 Carica papaya HOM05D006958 ORTHO05D008814 3.1e-21 105.5 142 45.1
Nitab4.5_0002484g0050 Nicotiana tabacum HOM05D006958 ORTHO05D008814 3.1e-21 105.5 146 41.8
FAN20G1263 Fragaria x ananassa HOM05D006958 ORTHO05D008814 5.3e-21 104.8 162 42.0
Peaxi162Scf00081g02114 Petunia axillaris HOM05D006958 ORTHO05D008814 6.9e-21 104.4 146 41.8
CiPaw.07G174600 Carya illinoinensis HOM05D006958 ORTHO05D008814 9.0e-21 104.0 208 37.0
SGA_v2.0_scaffold28G11833 Striga asiatica HOM05D006958 ORTHO05D008814 9.0e-21 104.0 148 43.9
ClCG08G016520 Citrullus lanatus HOM05D006958 ORTHO05D008814 2.0e-20 102.8 147 41.5
unitig_744.g24127 Utricularia gibba HOM05D006958 ORTHO05D008814 2.0e-20 102.8 150 42.7
ATR0739G011 Amborella trichopoda HOM05D006958 ORTHO05D008814 2.6e-20 102.4 151 44.4
PGR031G1511 Punica granatum HOM05D006958 ORTHO05D008814 2.6e-20 102.4 148 42.6
Sed0002112 Sechium edule HOM05D006958 ORTHO05D008814 2.6e-20 102.4 147 42.2
Phvul.001G028000 Phaseolus vulgaris HOM05D006958 ORTHO05D008814 3.4e-20 102.1 141 44.7
Lj5g0000926 Lotus japonicus HOM05D006958 ORTHO05D008814 4.5e-20 101.7 145 44.8
Nitab4.5_0004654g0020 Nicotiana tabacum HOM05D006958 ORTHO05D008814 5.8e-20 101.3 146 40.4
Solyc04g077820.4 Solanum lycopersicum HOM05D006958 ORTHO05D008814 5.8e-20 101.3 146 41.1
Sopen04g031420 Solanum pennellii HOM05D006958 ORTHO05D008814 5.8e-20 101.3 146 41.1
QL12p038133 Quercus lobata HOM05D006958 ORTHO05D008814 7.6e-20 100.9 147 42.2
CSS0026693 Camellia sinensis var. sinensis HOM05D006958 ORTHO05D008814 1.0e-19 100.5 145 43.4
Migut.N02783 Erythranthe guttata HOM05D006958 ORTHO05D008814 1.0e-19 100.5 210 36.2
Medtr1g018000 Medicago truncatula HOM05D006958 ORTHO05D008814 2.9e-19 99.0 146 43.8
Cc10_g05800 Coffea canephora HOM05D006958 ORTHO05D008814 4.9e-19 98.2 148 41.2
Aqoxy6G02602 Aquilegia oxysepala HOM05D006958 ORTHO05D008814 1.9e-18 96.3 110 50.9
Lj4A758G77 Lonicera japonica HOM05D006958 ORTHO05D008814 1.9e-18 96.3 111 48.6
MELO3C010802.2 Cucumis melo HOM05D006958 ORTHO05D008814 2.5e-18 95.9 209 34.9
EL10Ac1g02379 Beta vulgaris HOM05D006958 ORTHO05D008814 3.2e-18 95.5 142 42.3
CAN.G724.27 Capsicum annuum HOM05D006958 ORTHO05D008814 3.2e-18 95.5 146 40.4
CsaV3_2G026090 Cucumis sativus L. HOM05D006958 ORTHO05D008814 3.2e-18 95.5 209 35.4
MBI16_g23890_MAGBIO Magnolia biondii HOM05D006958 ORTHO05D008814 4.2e-18 95.1 150 41.3
arahy.Tifrunner.gnm1.ann1.8TQ0W2 Arachis hypogaea HOM05D006958 ORTHO05D008814 7.1e-18 94.4 148 44.6
PSO541G3524 Papaver somniferum HOM05D006958 ORTHO05D008814 1.6e-17 93.2 145 42.8
PGSC0003DMG400010608 Solanum tuberosum HOM05D006958 ORTHO05D008814 1.6e-17 93.2 159 36.5
PSO541G2153 Papaver somniferum HOM05D006958 ORTHO05D008814 2.7e-17 92.4 148 41.9
PSO675G0096 Papaver somniferum HOM05D006958 ORTHO05D008814 2.7e-17 92.4 148 41.9
Zm00001eb325900 Zea mays HOM05D006958 ORTHO05D008814 1.0e-16 90.5 151 39.7
HPP92_009523 Vanilla planifolia HOM05D006958 ORTHO05D008814 1.3e-16 90.1 148 37.8
ECA246G2880 Erigeron canadensis HOM05D006958 ORTHO05D008814 2.3e-16 89.4 151 39.1
HanXRQChr08g0229631 Helianthus annuus HOM05D006958 ORTHO05D008814 1.9e-15 86.3 177 35.0
Psat6g018160 Pisum sativum HOM05D006958 ORTHO05D008814 3.3e-15 85.5 119 45.4
Lsat_1_v5_gn_6_110920 Lactuca sativa HOM05D006958 ORTHO05D008814 1.3e-14 83.6 183 32.8
CDE04G0359 Ceratophyllum demersum HOM05D006958 ORTHO05D008814 2.1e-14 82.8 141 39.7
HPP92_009559 Vanilla planifolia HOM05D006958 ORTHO05D008814 2.1e-14 82.8 80 55.0
DCAR_020049 Daucus carota HOM05D006958 ORTHO05D008814 1.2e-12 77.0 162 32.7
SMO334G0101 Selaginella moellendorffii HOM05D006958 ORTHO05D008814 2.7e-09 65.9 77 41.6
SEGI_26692 Sequoiadendron giganteum HOM05D006958 ORTHO05D008814 2.7e-09 65.9 64 46.9
AUR62022480 Chenopodium quinoa HOM05D006958 ORTHO05D008814 1.3e-08 63.5 62 48.4
Pp3c12_1620 Physcomitrium patens HOM05D006958 ORTHO05D008814 2.3e-08 62.8 171 26.9
CBR_g51257 Chara braunii HOM05D006958 ORTHO05D008814 1.1e-07 60.5 86 40.7
MBI15_g25904_MAGBIO Magnolia biondii HOM05D006958 ORTHO05D017181 1.1e-07 60.5 49 59.2


User provided reference genes

Program Settings