Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10619 Brassica carinata HOM05D028677 ORTHO05D027363 4.7e-89 331.3 177 100.0
C04p25830 Brassica napus HOM05D028677 ORTHO05D027363 1.5e-79 299.7 163 98.8
BolC4t24225H Brassica oleracea HOM05D028677 ORTHO05D027363 1.5e-79 299.7 163 98.8
C05p50990 Brassica napus HOM05D028677 ORTHO05D027363 3.4e-79 298.5 163 98.2
BcaB06g27252 Brassica carinata HOM05D005170 ORTHO05D006985 2.5e-10 69.7 88 51.1
BcaC02g09673 Brassica carinata HOM05D005170 ORTHO05D006985 2.5e-10 69.7 88 51.1
C04p45420 Brassica napus HOM05D005170 ORTHO05D006985 2.5e-10 69.7 88 51.1
BolC4t26124H Brassica oleracea HOM05D005170 ORTHO05D006985 2.5e-10 69.7 88 51.1
Potri.004G111500 Populus trichocarpa HOM05D005170 ORTHO05D006985 8.2e-09 64.7 85 45.9
Glyma.18G276300 Glycine max HOM05D005170 ORTHO05D006985 1.1e-08 64.3 76 48.7
FvH4_6g46110 Fragaria vesca HOM05D005170 ORTHO05D006985 1.4e-08 63.9 84 47.6
FAN14G1739 Fragaria x ananassa HOM05D005170 ORTHO05D006985 1.4e-08 63.9 84 47.6
Lsat_1_v5_gn_3_95261 Lactuca sativa HOM05D005170 ORTHO05D006985 1.4e-08 63.9 73 52.1
Sopen02g034140 Solanum pennellii HOM05D005170 ORTHO05D006985 1.4e-08 63.9 160 35.6
A04p11710 Brassica napus HOM05D005170 ORTHO05D006985 1.8e-08 63.5 88 44.3
BraA04t16838Z Brassica rapa HOM05D005170 ORTHO05D006985 1.8e-08 63.5 88 44.3
FAN05G5078 Fragaria x ananassa HOM05D005170 ORTHO05D006985 1.8e-08 63.5 85 47.1
Glyma.08G253900 Glycine max HOM05D005170 ORTHO05D006985 1.8e-08 63.5 178 30.9
Phvul.008G024500 Phaseolus vulgaris HOM05D005170 ORTHO05D006985 1.8e-08 63.5 76 47.4
Sabra04G0072900 Salix brachista HOM05D005170 ORTHO05D006985 1.8e-08 63.5 85 44.7
Lj1g0005667 Lotus japonicus HOM05D005170 ORTHO05D006985 2.4e-08 63.2 77 46.8
Solyc02g089360.4 Solanum lycopersicum HOM05D005170 ORTHO05D006985 2.4e-08 63.2 162 33.3
PGSC0003DMG400001473 Solanum tuberosum HOM05D005170 ORTHO05D006985 2.4e-08 63.2 162 33.3
Actinidia18094 Actinidia chinensis HOM05D005170 ORTHO05D006985 3.1e-08 62.8 84 44.0
Nitab4.5_0002171g0080 Nicotiana tabacum HOM05D005170 ORTHO05D006985 3.1e-08 62.8 157 37.6
Oeu062190.2 Olea europaea HOM05D005170 ORTHO05D006985 3.1e-08 62.8 75 50.7
Eucgr.I02082 Eucalyptus grandis HOM05D005170 ORTHO05D006985 4.1e-08 62.4 80 47.5
VMungo1383G1046 Vigna mungo HOM05D005170 ORTHO05D006985 4.1e-08 62.4 134 34.3
MD09G1076900 Malus domestica HOM05D005170 ORTHO05D006985 5.3e-08 62.0 79 44.3
CSS0017694 Camellia sinensis var. sinensis HOM05D005170 ORTHO05D006985 6.9e-08 61.6 74 52.7
CSS0024263 Camellia sinensis var. sinensis HOM05D005170 ORTHO05D006985 6.9e-08 61.6 74 52.7
CAN.G497.45 Capsicum annuum HOM05D005170 ORTHO05D006985 6.9e-08 61.6 83 47.0
COL.COLO4_00229 Corchorus olitorius HOM05D005170 ORTHO05D006985 6.9e-08 61.6 85 44.7
Lj4A126T71 Lonicera japonica HOM05D005170 ORTHO05D006985 6.9e-08 61.6 82 45.1
RcHm_v2.0_Chr2g0164441 Rosa chinensis HOM05D005170 ORTHO05D006985 9.0e-08 61.2 84 44.0
RcHm_v2.0_Chr2g0164481 Rosa chinensis HOM05D005170 ORTHO05D006985 9.0e-08 61.2 84 44.0
GSVIVG01036517001 Vitis vinifera HOM05D005170 ORTHO05D006985 9.0e-08 61.2 222 30.6
Medtr7g017500 Medicago truncatula HOM05D005170 ORTHO05D006985 1.2e-07 60.8 73 47.9
Migut.H00575 Erythranthe guttata HOM05D005170 ORTHO05D006985 1.5e-07 60.5 81 46.9
THA.LOC104805534 Tarenaya hassleriana HOM05D005170 ORTHO05D006985 1.5e-07 60.5 87 42.5
TWI34G1112 Tripterygium wilfordii HOM05D005170 ORTHO05D006985 1.5e-07 60.5 80 47.5
arahy.Tifrunner.gnm1.ann1.3DLK77 Arachis hypogaea HOM05D005170 ORTHO05D006985 2.0e-07 60.1 74 45.9
arahy.Tifrunner.gnm1.ann1.66GFWV Arachis hypogaea HOM05D005170 ORTHO05D006985 2.0e-07 60.1 74 45.9
Cc07_g04630 Coffea canephora HOM05D005170 ORTHO05D006985 2.0e-07 60.1 83 44.6
ECA246G1099 Erigeron canadensis HOM05D005170 ORTHO05D006985 2.0e-07 60.1 86 44.2
Carub.0007s3703 Capsella rubella HOM05D005170 ORTHO05D006985 2.6e-07 59.7 85 43.5
Hma1.2p1_2186F.1_g316400 Hydrangea macrophylla HOM05D005170 ORTHO05D006985 3.4e-07 59.3 155 34.2
Thecc.04G110100 Theobroma cacao HOM05D005170 ORTHO05D006985 3.4e-07 59.3 85 42.4
arahy.Tifrunner.gnm1.ann1.87D3N1 Arachis hypogaea HOM05D005170 ORTHO05D006985 4.5e-07 58.9 73 46.6
Gohir.D07G185600 Gossypium hirsutum HOM05D005170 ORTHO05D006985 4.5e-07 58.9 87 41.4
Rhsim10G0060500 Rhododendron simsii HOM05D005170 ORTHO05D006985 4.5e-07 58.9 84 41.7
Cpa.g.sc14.254 Carica papaya HOM05D005170 ORTHO05D006985 5.9e-07 58.5 85 44.7
Cfa007711 Carpinus fangiana HOM05D005170 ORTHO05D006985 5.9e-07 58.5 150 33.3
vmacro05605 Vaccinium macrocarpon HOM05D005170 ORTHO05D006985 5.9e-07 58.5 84 42.9
vmacro17105 Vaccinium macrocarpon HOM05D005170 ORTHO05D006985 5.9e-07 58.5 84 42.9
vmacro23470 Vaccinium macrocarpon HOM05D005170 ORTHO05D006985 5.9e-07 58.5 84 42.9
CsaV3_4G009930 Cucumis sativus L. HOM05D005170 ORTHO05D006985 7.7e-07 58.2 85 43.5
Nitab4.5_0002978g0100 Nicotiana tabacum HOM05D005170 ORTHO05D006985 7.7e-07 58.2 149 36.2
Sed0018763 Sechium edule HOM05D005170 ORTHO05D006985 7.7e-07 58.2 85 43.5
CANSAT64G0674 Cannabis sativa HOM05D005170 ORTHO05D006985 1.0e-06 57.8 79 46.8
CDE02G1515 Ceratophyllum demersum HOM05D005170 ORTHO05D006985 1.0e-06 57.8 133 30.1
PGR004G2610 Punica granatum HOM05D005170 ORTHO05D006985 1.0e-06 57.8 80 42.5
RcHm_v2.0_Chr2g0164301 Rosa chinensis HOM05D005170 ORTHO05D006985 1.0e-06 57.8 85 40.0
SEGI_17824 Sequoiadendron giganteum HOM05D000555 ORTHO05D000646 1.0e-06 57.8 83 41.0
Psat3g194480 Pisum sativum HOM05D005170 ORTHO05D006985 1.3e-06 57.4 165 29.7
Prupe.3G247200 Prunus persica HOM05D005170 ORTHO05D006985 1.3e-06 57.4 80 42.5
HanXRQChr12g0380201 Helianthus annuus HOM05D005170 ORTHO05D006985 1.7e-06 57.0 169 32.0
Nn4g23569 Nelumbo nucifera HOM05D005170 ORTHO05D006985 1.7e-06 57.0 84 42.9
Gohir.A07G178500 Gossypium hirsutum HOM05D005170 ORTHO05D006985 2.2e-06 56.6 87 41.4
CiPaw.03G081400 Carya illinoinensis HOM05D005170 ORTHO05D006985 2.9e-06 56.2 151 31.8
ClCG07G016130 Citrullus lanatus HOM05D005170 ORTHO05D006985 2.9e-06 56.2 85 43.5
FAN09G2425 Fragaria x ananassa HOM05D005170 ORTHO05D006985 2.9e-06 56.2 195 33.8
Peaxi162Scf00020g02131 Petunia axillaris HOM05D005170 ORTHO05D006985 2.9e-06 56.2 156 34.6
PSO063G4379 Papaver somniferum HOM05D005170 ORTHO05D006985 5.0e-06 55.5 82 41.5
PSO782G1791 Papaver somniferum HOM05D005170 ORTHO05D006985 5.0e-06 55.5 82 41.5
Lalb_Chr10g0092611 Lupinus albus HOM05D005170 ORTHO05D006985 6.5e-06 55.1 179 30.7
TPR.G3272 Trifolium pratense HOM05D005170 ORTHO05D006985 6.5e-06 55.1 135 32.6
Ciclev10011153m.g Citrus clementina HOM05D005170 ORTHO05D006985 8.5e-06 54.7 222 30.6


User provided reference genes

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