Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10584 Brassica carinata HOM05D004441 ORTHO05D003109 2.6e-130 468.8 246 100.0
C04p27200 Brassica napus HOM05D004441 ORTHO05D003109 2.6e-130 468.8 246 100.0
BolC4t24251H Brassica oleracea HOM05D004441 ORTHO05D003109 2.6e-130 468.8 246 100.0
A03p66730 Brassica napus HOM05D004441 ORTHO05D003109 1.8e-115 419.5 246 91.1
BraA01t02809Z Brassica rapa HOM05D004441 ORTHO05D003109 1.8e-115 419.5 246 91.1
BcaC06g31839 Brassica carinata HOM05D004441 ORTHO05D003109 5.3e-107 391.3 232 88.8
BraA01t03127Z Brassica rapa HOM05D004441 ORTHO05D003109 2.0e-106 389.4 248 84.3
BcaC09g49327 Brassica carinata HOM05D004441 ORTHO05D003109 4.5e-106 388.3 248 83.9
C01p37890 Brassica napus HOM05D004441 ORTHO05D003109 4.5e-106 388.3 248 83.9
BolC1t03749H Brassica oleracea HOM05D004441 ORTHO05D003109 4.5e-106 388.3 248 83.9
A01p29970 Brassica napus HOM05D004441 ORTHO05D003109 4.2e-104 381.7 248 82.3
BcaB04g20321 Brassica carinata HOM05D004441 ORTHO05D003109 9.7e-101 370.5 246 82.5
Sp2g03290 Schrenkiella parvula HOM05D004441 ORTHO05D003109 2.0e-98 362.8 247 80.2
AT1G61170 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 5.5e-88 328.2 250 74.8
AL2G15180 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 2.1e-87 326.2 250 74.8
CARHR051480 Cardamine hirsuta HOM05D004441 ORTHO05D003109 7.5e-85 317.8 246 74.4
Thhalv10023654m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 1.0e-81 307.4 249 70.3
Carub.0002s0400 Capsella rubella HOM05D004441 ORTHO05D003109 6.5e-81 304.7 252 70.6
Aa31LG2G9430 Aethionema arabicum HOM05D004441 ORTHO05D003109 2.8e-55 219.5 251 57.8
A06p07830 Brassica napus HOM05D004441 ORTHO05D003109 7.3e-40 168.3 284 47.9
BraA06t23983Z Brassica rapa HOM05D004441 ORTHO05D003109 1.2e-39 167.5 284 47.9
Thhalv10008484m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 4.4e-37 159.1 275 46.5
Sp1g09810 Schrenkiella parvula HOM05D004441 ORTHO05D003109 1.3e-36 157.5 276 46.7
THA.LOC104809557 Tarenaya hassleriana HOM05D004441 ORTHO05D003109 8.4e-36 154.8 300 47.0
Thhalv10024164m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 1.5e-32 144.1 119 70.6
AL1G22120 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 2.6e-29 133.3 271 41.3
CARHR011330 Cardamine hirsuta HOM05D004441 ORTHO05D003109 1.3e-28 131.0 267 44.2
Aa31LG1G3780 Aethionema arabicum HOM05D004441 ORTHO05D003109 2.9e-28 129.8 290 41.4
C05p09410 Brassica napus HOM05D004441 ORTHO05D003109 5.4e-27 125.6 196 49.5
BolC5t29682H Brassica oleracea HOM05D004441 ORTHO05D003109 9.3e-27 124.8 196 49.5
AT1G11125 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 6.0e-26 122.1 271 39.9
C08p48340 Brassica napus HOM05D004441 ORTHO05D003109 4.3e-24 115.9 271 39.5
BolC8t52373H Brassica oleracea HOM05D004441 ORTHO05D003109 4.3e-24 115.9 271 39.5
BraA09t41810Z Brassica rapa HOM05D004441 ORTHO05D003109 4.3e-24 115.9 276 39.9
Gorai.009G171500 Gossypium raimondii HOM05D004441 ORTHO05D003109 5.6e-24 115.5 309 36.9
Gohir.D05G166400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 4.8e-23 112.5 309 36.6
Duzib160G0195 Durio zibethinus HOM05D004441 ORTHO05D003109 2.4e-22 110.2 304 36.8
Gohir.A05G163400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 4.0e-22 109.4 309 35.9
Thecc.06G194800 Theobroma cacao HOM05D004441 ORTHO05D003109 6.9e-22 108.6 303 38.3
A09p64850 Brassica napus HOM05D004441 ORTHO05D003109 9.0e-22 108.2 276 39.1
Gohir.A06G124300 Gossypium hirsutum HOM05D004441 ORTHO05D003109 9.0e-22 108.2 295 40.3
Gorai.010G150800 Gossypium raimondii HOM05D004441 ORTHO05D003109 9.0e-22 108.2 295 40.3
Gohir.D06G129200 Gossypium hirsutum HOM05D004441 ORTHO05D003109 9.9e-21 104.8 295 39.0
Carub.0001s1070 Capsella rubella HOM05D004441 ORTHO05D003109 1.3e-20 104.4 281 37.0
COL.COLO4_31538 Corchorus olitorius HOM05D004441 ORTHO05D003109 2.9e-20 103.2 316 35.8
Duzib192G0975 Durio zibethinus HOM05D004441 ORTHO05D003109 4.2e-19 99.4 309 34.0
TWI63G0258 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 5.4e-19 99.0 307 38.1
BcaC07g41791 Brassica carinata HOM05D004441 ORTHO05D003109 7.1e-19 98.6 273 36.6
Sabra11G0031800 Salix brachista HOM05D004441 ORTHO05D003109 5.1e-17 92.4 328 32.3
Potri.011G045700 Populus trichocarpa HOM05D004441 ORTHO05D003109 1.1e-16 91.3 334 33.2
Phvul.006G189700 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 3.3e-16 89.7 271 34.7
Hma1.2p1_0191F.1_g083410 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 7.4e-16 88.6 275 35.6
Hma1.2p1_2209F.1_g317155 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 7.4e-16 88.6 275 35.6
Solyc02g078760.1 Solanum lycopersicum HOM05D004441 ORTHO05D003109 2.8e-15 86.7 263 36.9
Lj1A1210T53 Lonicera japonica HOM05D004441 ORTHO05D003109 6.2e-15 85.5 283 36.7
TPR.G36719 Trifolium pratense HOM05D004441 ORTHO05D003109 6.2e-15 85.5 294 34.4
Nitab4.5_0001820g0050 Nicotiana tabacum HOM05D004441 ORTHO05D003109 3.1e-14 83.2 262 35.1
Potri.004G037100 Populus trichocarpa HOM05D004441 ORTHO05D003109 4.0e-14 82.8 327 32.1
Ca_00297_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 6.9e-14 82.0 284 35.6
Medtr2g012750 Medicago truncatula HOM05D004441 ORTHO05D003109 1.2e-13 81.3 282 36.5
PGSC0003DMG400022372 Solanum tuberosum HOM05D004441 ORTHO05D003109 2.0e-13 80.5 263 36.1
MD10G1300500 Malus domestica HOM05D004441 ORTHO05D003109 2.6e-13 80.1 331 32.6
Sopen02g023590 Solanum pennellii HOM05D004441 ORTHO05D003109 2.6e-13 80.1 263 36.9
VMungo0540G1643 Vigna mungo HOM05D004441 ORTHO05D003109 7.6e-13 78.6 280 34.6
arahy.Tifrunner.gnm1.ann1.KXRU9A Arachis hypogaea HOM05D004441 ORTHO05D003109 1.3e-12 77.8 286 34.3
Manes.17G041200 Manihot esculenta HOM05D004441 ORTHO05D003109 1.3e-12 77.8 330 32.7
Dinv40519 Davidia involucrata HOM05D004441 ORTHO05D003109 1.7e-12 77.4 252 36.9
CiPaw.09G160900 Carya illinoinensis HOM05D004441 ORTHO05D003109 2.2e-12 77.0 300 33.3
Rhsim13G0175700 Rhododendron simsii HOM05D004441 ORTHO05D003109 2.2e-12 77.0 286 34.6
FAN25G3261 Fragaria x ananassa HOM05D004441 ORTHO05D003109 2.9e-12 76.6 293 33.1
FAN16G1227 Fragaria x ananassa HOM05D004441 ORTHO05D003109 4.9e-12 75.9 293 33.8
FAN11G1619 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.1e-11 74.7 290 33.8
Glyma.13G244100 Glycine max HOM05D004441 ORTHO05D003109 1.1e-11 74.7 284 34.2
Nitab4.5_0007319g0010 Nicotiana tabacum HOM05D004441 ORTHO05D003109 2.4e-11 73.6 260 35.0
FvH4_3g04520 Fragaria vesca HOM05D004441 ORTHO05D003109 3.2e-11 73.2 294 33.7
Aqoxy1G02647 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 7.1e-11 72.0 195 36.4
Lj6g0023239 Lotus japonicus HOM05D004441 ORTHO05D003109 7.1e-11 72.0 245 34.7
RcHm_v2.0_Chr5g0007441 Rosa chinensis HOM05D004441 ORTHO05D003109 7.1e-11 72.0 320 31.2
Lj1A733T64 Lonicera japonica HOM05D009304 ORTHO05D003109 9.3e-11 71.6 303 33.3
TAR629G3100 Trochodendron aralioides HOM05D004441 ORTHO05D003109 9.3e-11 71.6 303 32.3
Cpa.g.sc27.93 Carica papaya HOM05D004441 ORTHO05D003109 1.2e-10 71.2 302 31.5
Ciclev10015894m.g Citrus clementina HOM05D004441 ORTHO05D003109 1.6e-10 70.9 339 31.0
Cc00_g11510 Coffea canephora HOM05D004441 ORTHO05D003109 2.1e-10 70.5 281 33.5
TWI38G0459 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 2.1e-10 70.5 310 33.2
arahy.Tifrunner.gnm1.ann1.7X1CID Arachis hypogaea HOM05D010177 ORTHO05D003109 4.6e-10 69.3 321 29.3
Psat1g207120 Pisum sativum HOM05D004441 ORTHO05D003109 6.0e-10 68.9 289 33.6
Glyma.15G069600 Glycine max HOM05D004441 ORTHO05D003109 7.9e-10 68.6 293 32.4
Actinidia11074 Actinidia chinensis HOM05D002331 ORTHO05D003109 1.8e-09 67.4 227 36.6
Prupe.4G040000 Prunus persica HOM05D004441 ORTHO05D003109 1.8e-09 67.4 327 31.5
CsaV3_6G049880 Cucumis sativus L. HOM05D004441 ORTHO05D003109 2.3e-09 67.0 287 35.2
Sabra04G0022600 Salix brachista HOM05D004441 ORTHO05D003109 2.3e-09 67.0 323 30.7
arahy.Tifrunner.gnm1.ann1.W0S7NR Arachis hypogaea HOM05D004441 ORTHO05D003109 3.9e-09 66.2 208 35.1
Lalb_Chr15g0089961 Lupinus albus HOM05D004441 ORTHO05D003109 5.1e-09 65.9 276 32.2
TAR627G0319 Trochodendron aralioides HOM05D004441 ORTHO05D003109 8.7e-09 65.1 206 34.0
FAN21G2327 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.1e-08 64.7 292 30.8
PGR004G2153 Punica granatum HOM05D004441 ORTHO05D003109 1.9e-08 63.9 329 33.1
CsaV3_1G011910 Cucumis sativus L. HOM05D004441 ORTHO05D003109 2.5e-08 63.5 269 34.2
DCAR_004123 Daucus carota HOM05D004441 ORTHO05D003109 2.5e-08 63.5 272 32.4
ClCG00G003130 Citrullus lanatus HOM05D004441 ORTHO05D003109 4.3e-08 62.8 288 33.7
ClCG01G022730 Citrullus lanatus HOM05D004441 ORTHO05D003109 4.3e-08 62.8 288 33.7
MELO3C007307.2 Cucumis melo HOM05D004441 ORTHO05D003109 4.3e-08 62.8 287 32.1
Sc17g0006420 Simmondsia chinensis HOM05D004441 ORTHO05D003109 4.3e-08 62.8 318 30.8
PSO675G8062 Papaver somniferum HOM05D004441 ORTHO05D003109 9.6e-08 61.6 321 30.5
Manes.16G023200 Manihot esculenta HOM05D004441 ORTHO05D003109 2.1e-07 60.5 316 31.3
PGR042G0321 Punica granatum HOM05D004441 ORTHO05D003109 2.8e-07 60.1 301 31.9
Atru.chr10.1971 Acer truncatum HOM05D004441 ORTHO05D003109 4.8e-07 59.3 219 31.5
ECA234G2831 Erigeron canadensis HOM05D004441 ORTHO05D003109 6.2e-07 58.9 288 29.9
Lsat_1_v5_gn_4_55461 Lactuca sativa HOM05D004441 ORTHO05D003109 8.1e-07 58.5 277 32.5
Nn1g06687 Nelumbo nucifera HOM05D004441 ORTHO05D003109 1.1e-06 58.2 229 31.4
ClCG03G005640 Citrullus lanatus HOM05D004441 ORTHO05D003109 1.4e-06 57.8 296 32.4
DCAR_009737 Daucus carota HOM05D009304 ORTHO05D003109 1.8e-06 57.4 246 34.1
Peaxi162Scf00612g00043 Petunia axillaris HOM05D004441 ORTHO05D003109 1.8e-06 57.4 264 32.2
Eucgr.D00694 Eucalyptus grandis HOM05D004441 ORTHO05D003109 2.4e-06 57.0 306 30.1
Sed0013174 Sechium edule HOM05D004441 ORTHO05D003109 2.4e-06 57.0 286 32.5
Aqoxy4G01294 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 3.1e-06 56.6 249 33.7
Phvul.002G224300 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 5.3e-06 55.8 272 29.4
PGR042G3342 Punica granatum HOM05D004441 ORTHO05D003109 5.3e-06 55.8 277 34.3
Manes.13G149800 Manihot esculenta HOM05D010652 ORTHO05D003109 9.0e-06 55.1 282 29.4


User provided reference genes

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