Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10535 Brassica carinata HOM05D003755 ORTHO05D004385 2.2e-183 645.6 349 100.0
C04p27760 Brassica napus HOM05D003755 ORTHO05D004385 2.2e-183 645.6 349 100.0
BolC4t24319H Brassica oleracea HOM05D003755 ORTHO05D004385 2.2e-183 645.6 349 100.0
BcaC06g31863 Brassica carinata HOM05D003755 ORTHO05D004385 4.9e-175 617.8 349 93.1
BraA01t03198Z Brassica rapa HOM05D003755 ORTHO05D004385 3.5e-173 611.7 349 91.7
A01p30670 Brassica napus HOM05D003755 ORTHO05D004385 1.0e-172 610.1 349 91.4
A01p30690 Brassica napus HOM05D003755 ORTHO05D004385 1.0e-172 610.1 349 91.4
C01p39060 Brassica napus HOM05D003755 ORTHO05D004385 4.3e-171 604.7 349 91.1
BolC1t03856H Brassica oleracea HOM05D003755 ORTHO05D004385 4.3e-171 604.7 349 91.1
BcaB04g20374 Brassica carinata HOM05D003755 ORTHO05D004385 7.6e-168 594.0 351 90.0
Sp2g02750 Schrenkiella parvula HOM05D003755 ORTHO05D004385 8.5e-167 590.5 349 88.3
CARHR050550 Cardamine hirsuta HOM05D003755 ORTHO05D004385 6.9e-161 570.9 351 87.7
Thhalv10023566m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 2.6e-160 568.9 350 85.7
AL2G14320 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 7.7e-160 567.4 349 86.8
Carub.0002s0327 Capsella rubella HOM05D003755 ORTHO05D004385 2.9e-159 565.5 349 87.4
AT1G61790 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 5.5e-158 561.2 349 86.0
Aa31LG2G9060 Aethionema arabicum HOM05D003755 ORTHO05D004385 5.7e-155 551.2 349 79.7
THA.LOC104823520 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 2.1e-141 506.1 349 73.4
THA.LOC104809515 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 2.8e-138 495.7 350 73.4
Cpa.g.sc198.13 Carica papaya HOM05D003755 ORTHO05D004385 7.2e-126 454.5 317 70.0
Thhalv10008090m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 2.1e-125 453.0 349 65.6
Thecc.06G215100 Theobroma cacao HOM05D003755 ORTHO05D004385 2.1e-125 453.0 314 69.7
Duzib160G0429 Durio zibethinus HOM05D003755 ORTHO05D004385 8.0e-125 451.1 349 65.6
PGR004G2273 Punica granatum HOM05D003755 ORTHO05D004385 1.0e-124 450.7 314 70.4
Gohir.A06G145950 Gossypium hirsutum HOM05D003755 ORTHO05D004385 3.0e-124 449.1 314 70.4
CsaV3_6G049210 Cucumis sativus L. HOM05D003755 ORTHO05D004385 6.8e-124 448.0 315 70.5
Duzib192G0935 Durio zibethinus HOM05D003755 ORTHO05D004385 8.8e-124 447.6 314 69.7
MELO3C007374.2 Cucumis melo HOM05D003755 ORTHO05D004385 1.2e-123 447.2 315 70.8
ClCG01G022150 Citrullus lanatus HOM05D003755 ORTHO05D004385 1.3e-122 443.7 315 70.2
Ciclev10015811m.g Citrus clementina HOM05D003755 ORTHO05D004385 1.8e-121 439.9 351 63.5
QL05p074736 Quercus lobata HOM05D003755 ORTHO05D004385 2.4e-121 439.5 313 69.6
Eucgr.E04113 Eucalyptus grandis HOM05D003755 ORTHO05D004385 3.1e-121 439.1 313 69.3
Sp1g10170 Schrenkiella parvula HOM05D003755 ORTHO05D004385 7.0e-121 438.0 339 66.7
Dinv17826 Davidia involucrata HOM05D003755 ORTHO05D004385 1.6e-120 436.8 312 67.0
Manes.16G011500 Manihot esculenta HOM05D003755 ORTHO05D004385 2.7e-120 436.0 343 64.1
CANSAT56G3751 Cannabis sativa HOM05D003755 ORTHO05D004385 4.5e-120 435.3 315 68.6
Cfa000266 Carpinus fangiana HOM05D003755 ORTHO05D004385 5.9e-120 434.9 351 63.2
Gohir.A05G168300 Gossypium hirsutum HOM05D003755 ORTHO05D004385 5.0e-119 431.8 314 68.5
AL1G22670 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 8.6e-119 431.0 314 69.7
Gohir.D05G171400 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.9e-118 429.9 314 68.2
TWI38G1592 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 1.9e-118 429.9 349 62.5
Hma1.2p1_0091F.1_g046190 Hydrangea macrophylla HOM05D003755 ORTHO05D004385 3.3e-118 429.1 345 63.2
TWI38G1222 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 4.3e-118 428.7 351 62.1
CSS0014334 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 5.6e-118 428.3 315 67.3
Atru.chr10.2154 Acer truncatum HOM05D003755 ORTHO05D004385 7.3e-118 427.9 365 59.7
CSS0017235 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 2.1e-117 426.4 314 65.0
Sopen03g005650 Solanum pennellii HOM05D003755 ORTHO05D004385 3.6e-117 425.6 352 63.1
FAN21G0915 Fragaria x ananassa HOM05D003755 ORTHO05D004385 4.7e-117 425.2 346 64.2
MBI18_g01410_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 6.1e-117 424.9 312 67.3
CiPaw.09G088000 Carya illinoinensis HOM05D003755 ORTHO05D004385 1.0e-116 424.1 342 64.0
PGSC0003DMG400024071 Solanum tuberosum HOM05D003755 ORTHO05D004385 1.0e-116 424.1 352 62.2
Medtr1g105470 Medicago truncatula HOM05D003755 ORTHO05D004385 1.8e-116 423.3 314 67.2
Solyc03g031790.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 6.8e-116 421.4 352 62.5
Glyma.20G141900 Glycine max HOM05D003755 ORTHO05D004385 1.2e-115 420.6 344 62.8
TAR626G0320 Trochodendron aralioides HOM05D003755 ORTHO05D004385 1.5e-115 420.2 312 67.3
Prupe.4G025400 Prunus persica HOM05D003755 ORTHO05D004385 2.0e-115 419.9 346 62.7
FvH4_3g02600 Fragaria vesca HOM05D003755 ORTHO05D004385 2.6e-115 419.5 348 63.8
Potri.011G025700 Populus trichocarpa HOM05D003755 ORTHO05D004385 3.4e-115 419.1 314 65.9
Glyma.10G251600 Glycine max HOM05D003755 ORTHO05D004385 4.4e-115 418.7 342 63.7
Phvul.007G053000 Phaseolus vulgaris HOM05D003755 ORTHO05D004385 4.4e-115 418.7 312 68.3
AT1G11560 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 9.8e-115 417.5 314 67.2
VMungo0720G2911 Vigna mungo HOM05D003755 ORTHO05D004385 1.7e-114 416.8 344 63.7
Atru.chr10.2153 Acer truncatum HOM05D003755 ORTHO05D004385 3.7e-114 415.6 322 64.0
Aqoxy4G01977 Aquilegia oxysepala HOM05D003755 ORTHO05D004385 1.1e-113 414.1 310 66.5
Sabra11G0016200 Salix brachista HOM05D003755 ORTHO05D004385 1.1e-113 414.1 351 63.0
Sabra11G0021900 Salix brachista HOM05D003755 ORTHO05D004385 1.1e-113 414.1 351 63.0
Ca_10975_v3 Cicer arietinum L. HOM05D003755 ORTHO05D004385 7.0e-113 411.4 314 65.3
COL.COLO4_31737 Corchorus olitorius HOM05D003755 ORTHO05D004385 7.0e-113 411.4 314 65.0
FAN25G0829 Fragaria x ananassa HOM05D003755 ORTHO05D004385 2.0e-112 409.8 333 64.3
Cc02_g11630 Coffea canephora HOM05D003755 ORTHO05D004385 2.7e-112 409.5 312 65.1
Carub.0001s1117 Capsella rubella HOM05D003755 ORTHO05D004385 1.3e-111 407.1 314 65.9
MD00G1180300 Malus domestica HOM05D003755 ORTHO05D004385 1.7e-111 406.8 314 64.3
CARHR011840 Cardamine hirsuta HOM05D003755 ORTHO05D004385 3.0e-111 406.0 315 65.4
Lalb_Chr21g0307811 Lupinus albus HOM05D003755 ORTHO05D004385 3.9e-111 405.6 351 60.7
Psat6g210560 Pisum sativum HOM05D003755 ORTHO05D004385 6.6e-111 404.8 312 64.4
AUR62012654 Chenopodium quinoa HOM05D003755 ORTHO05D004385 5.6e-110 401.7 342 61.1
Migut.H01555 Erythranthe guttata HOM05D003755 ORTHO05D004385 9.5e-110 401.0 313 63.3
Lsat_1_v5_gn_4_58721 Lactuca sativa HOM05D003755 ORTHO05D004385 9.5e-110 401.0 314 63.1
MSTRG.14647 Avicennia marina HOM05D003755 ORTHO05D004385 3.6e-109 399.1 312 63.5
Os03g0565100 Oryza sativa ssp. japonica HOM05D003755 ORTHO05D004385 3.6e-109 399.1 343 61.2
Sed0012988 Sechium edule HOM05D003755 ORTHO05D004385 8.0e-109 397.9 317 61.8
Lj5g0019176 Lotus japonicus HOM05D003755 ORTHO05D004385 1.4e-108 397.1 352 58.5
TAR624G0284 Trochodendron aralioides HOM05D003755 ORTHO05D004385 1.4e-108 397.1 346 59.0
Ah.09g235250 Amaranthus hybridus HOM05D003755 ORTHO05D004385 8.9e-108 394.4 347 59.4
Oeu016525.1 Olea europaea HOM05D003755 ORTHO05D004385 2.0e-107 393.3 314 63.1
Manes.17G035900 Manihot esculenta HOM05D003755 ORTHO05D004385 2.6e-107 392.9 352 56.2
DCAR_028162 Daucus carota HOM05D003755 ORTHO05D004385 1.3e-106 390.6 314 63.7
PSO675G2634 Papaver somniferum HOM05D003755 ORTHO05D004385 1.3e-106 390.6 313 63.6
ECA234G3589 Erigeron canadensis HOM05D003755 ORTHO05D004385 1.7e-106 390.2 351 57.8
PSO541G6483 Papaver somniferum HOM05D003755 ORTHO05D004385 3.7e-106 389.0 313 63.3
Gohir.D09G069500 Gossypium hirsutum HOM05D003755 ORTHO05D004385 8.3e-106 387.9 340 57.1
Gorai.006G083700 Gossypium raimondii HOM05D003755 ORTHO05D004385 8.3e-106 387.9 340 57.1
unitig_26.g9395 Utricularia gibba HOM05D003755 ORTHO05D004385 1.4e-105 387.1 314 61.5
Zm00001eb043070 Zea mays HOM05D003755 ORTHO05D004385 1.4e-105 387.1 314 62.7
EL10Ac8g19999 Beta vulgaris HOM05D003755 ORTHO05D004385 1.9e-105 386.7 312 62.8
MD10G1315200 Malus domestica HOM05D003755 ORTHO05D004385 2.0e-104 383.3 337 58.8
Nn1g07049 Nelumbo nucifera HOM05D003755 ORTHO05D004385 6.0e-104 381.7 316 59.8
Sc05g0008910 Simmondsia chinensis HOM05D003755 ORTHO05D004385 6.0e-104 381.7 313 58.5
ATR0109G031 Amborella trichopoda HOM05D003755 ORTHO05D004385 2.3e-103 379.8 341 56.9
Gorai.010G177400 Gossypium raimondii HOM05D003755 ORTHO05D004385 1.2e-101 374.0 314 62.1
Nitab4.5_0000091g0500 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.2e-101 374.0 337 57.6
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 4.7e-101 372.1 302 62.6
BraA08t35260Z Brassica rapa HOM05D003755 ORTHO05D004385 2.3e-100 369.8 332 58.1
BcaB03g13253 Brassica carinata HOM05D003755 ORTHO05D004385 6.8e-100 368.2 315 61.0
C08p14530 Brassica napus HOM05D003755 ORTHO05D004385 1.5e-99 367.1 333 58.0
A08p33440 Brassica napus HOM05D003755 ORTHO05D004385 2.6e-99 366.3 332 57.8
Nitab4.5_0005793g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 8.3e-98 361.3 344 54.4
CDE05G0706 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 5.4e-97 358.6 309 59.5
BcaC07g38668 Brassica carinata HOM05D003755 ORTHO05D004385 7.1e-97 358.2 334 55.4
BolC8t49101H Brassica oleracea HOM05D003755 ORTHO05D004385 7.1e-97 358.2 334 55.4
Dinv20022 Davidia involucrata HOM05D003755 ORTHO05D004385 9.2e-97 357.8 276 62.7
Peaxi162Scf00079g00073 Petunia axillaris HOM05D003755 ORTHO05D004385 7.8e-96 354.8 327 57.2
Gohir.D06G152000 Gossypium hirsutum HOM05D003755 ORTHO05D004385 5.6e-94 348.6 247 69.6
SEGI_11297 Sequoiadendron giganteum HOM05D003755 ORTHO05D004385 5.6e-94 348.6 311 57.2
Lalb_Chr06g0164871 Lupinus albus HOM05D003755 ORTHO05D004385 2.1e-93 346.7 351 54.1
SGA_v2.0_scaffold89G27449 Striga asiatica HOM05D003755 ORTHO05D004385 6.2e-93 345.1 311 54.3
Nitab4.5_0002196g0020 Nicotiana tabacum HOM05D003755 ORTHO05D004385 2.3e-92 343.2 307 56.4
Mapoly0061s0113 Marchantia polymorpha HOM05D003755 ORTHO05D004385 9.9e-91 337.8 311 52.7
PGSC0003DMG400010547 Solanum tuberosum HOM05D003755 ORTHO05D004385 1.3e-90 337.4 303 56.4
TPR.G5472 Trifolium pratense HOM05D003755 ORTHO05D004385 6.4e-90 335.1 265 63.4
Lj2A272T65 Lonicera japonica HOM05D003755 ORTHO05D004385 1.1e-89 334.3 345 51.9
TWI38G0036 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 3.2e-89 332.8 302 55.0
Peaxi162Scf00241g00121 Petunia axillaris HOM05D003755 ORTHO05D004385 5.4e-89 332.0 341 52.2
PGSC0003DMG400002072 Solanum tuberosum HOM05D003755 ORTHO05D004385 4.6e-88 328.9 341 49.0
Sopen10g003960 Solanum pennellii HOM05D003755 ORTHO05D004385 7.8e-88 328.2 303 55.1
Solyc10g008090.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 1.0e-87 327.8 338 51.8
Sopen02g024900 Solanum pennellii HOM05D003755 ORTHO05D004385 1.0e-87 327.8 341 48.7
CAN.G569.37 Capsicum annuum HOM05D003755 ORTHO05D004385 3.0e-87 326.2 343 50.1
Solyc02g080180.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 3.9e-87 325.9 341 48.7
Pp3c3_13650 Physcomitrium patens HOM05D003755 ORTHO05D004385 6.6e-87 325.1 312 54.5
Pp3c26_7270 Physcomitrium patens HOM05D003755 ORTHO05D004385 1.1e-86 324.3 347 48.1
SGA_v2.0_scaffold114G32031 Striga asiatica HOM05D003755 ORTHO05D004385 1.9e-86 323.6 281 58.7
CDE11G0393 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 2.1e-85 320.1 309 53.4
Sabra04G0011400 Salix brachista HOM05D003755 ORTHO05D004385 4.0e-84 315.8 377 48.3
SalBow8G5594 Salvia bowleyana HOM05D003755 ORTHO05D004385 2.0e-83 313.5 343 47.8
SMO118G0372 Selaginella moellendorffii HOM05D003755 ORTHO05D004385 2.0e-83 313.5 313 50.5
AagrBONN_evm.TU.Sc2ySwM_362.2118 Anthoceros agrestis HOM05D003755 ORTHO05D004385 1.6e-80 303.9 341 47.5
HanXRQChr01g0003661 Helianthus annuus HOM05D003755 ORTHO05D004385 1.6e-80 303.9 313 48.6
Lsat_1_v5_gn_1_121441 Lactuca sativa HOM05D003755 ORTHO05D004385 1.6e-80 303.9 349 44.4
Pp3c10_1910 Physcomitrium patens HOM05D003755 ORTHO05D004385 1.6e-80 303.9 312 49.4
AagrBONN_evm.TU.Sc2ySwM_362.2344 Anthoceros agrestis HOM05D003755 ORTHO05D004385 2.7e-80 303.1 311 48.9
Gohir.A09G069600 Gossypium hirsutum HOM05D003755 ORTHO05D004385 3.9e-79 299.3 245 58.4
Nitab4.5_0002196g0010 Nicotiana tabacum HOM05D000234 ORTHO05D004385 3.9e-79 299.3 268 56.7
Haze_06749 Corylus avellana HOM05D003755 ORTHO05D004385 8.1e-77 291.6 258 58.9
Lj1A1226T40 Lonicera japonica HOM05D003755 ORTHO05D004385 4.0e-76 289.3 285 51.9
CAN.G404.10 Capsicum annuum HOM05D003755 ORTHO05D004385 6.9e-76 288.5 189 72.5
AUR62021999 Chenopodium quinoa HOM05D003755 ORTHO05D004385 7.6e-75 285.0 189 72.5
Nitab4.5_0010745g0030 Nicotiana tabacum HOM05D003755 ORTHO05D004385 2.9e-74 283.1 191 70.7
Nn1g03617 Nelumbo nucifera HOM05D003755 ORTHO05D004385 7.9e-72 275.0 179 69.8
BraA01t03199Z Brassica rapa HOM05D003755 ORTHO05D004385 3.9e-71 272.7 168 86.3
MBI14_g15203_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 6.7e-71 271.9 228 61.4
MBI06_g27714_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 1.1e-68 264.6 190 67.9
CBR_g36660 Chara braunii HOM05D003755 ORTHO05D004385 1.4e-68 264.2 316 48.7
Nitab4.5_0002347g0110 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.5e-67 260.8 189 64.6
MBI19_g26612_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 1.3e-61 241.1 182 67.0
Nitab4.5_0002645g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 5.8e-59 232.3 184 59.8
Peaxi162Scf00427g00012 Petunia axillaris HOM05D003755 ORTHO05D004385 4.2e-57 226.1 190 57.9
CBR_g46234 Chara braunii HOM05D003755 ORTHO05D004385 1.2e-56 224.6 308 43.5
CAN.G782.22 Capsicum annuum HOM05D003755 ORTHO05D004385 1.3e-55 221.1 232 48.7
Sed0022949 Sechium edule HOM05D003755 ORTHO05D004385 1.5e-51 207.6 229 49.3
Actinidia26947 Actinidia chinensis HOM05D003755 ORTHO05D004385 3.2e-49 199.9 227 55.1
TPR.G16992 Trifolium pratense HOM05D003755 ORTHO05D004385 3.1e-44 183.3 151 62.3
Lsat_1_v5_gn_3_29240 Lactuca sativa HOM05D003755 ORTHO05D004385 1.1e-41 174.9 329 33.7
BcaC04g22351 Brassica carinata HOM05D003755 ORTHO05D004385 1.7e-37 161.0 104 80.8
Lsat_1_v5_gn_7_27941 Lactuca sativa HOM05D003755 ORTHO05D004385 6.9e-36 155.6 172 47.7
CAN.G782.11 Capsicum annuum HOM05D003755 ORTHO05D004385 1.1e-33 148.3 161 50.3
Lsat_1_v5_gn_7_47961 Lactuca sativa HOM05D003755 ORTHO05D004385 1.1e-30 138.3 92 69.6
Lsat_1_v5_gn_4_80500 Lactuca sativa HOM05D003755 ORTHO05D004385 1.3e-29 134.8 89 68.5
CAN.G782.12 Capsicum annuum HOM05D003755 ORTHO05D004385 6.3e-29 132.5 95 67.4
Cre16.g675602 Chlamydomonas reinhardtii HOM05D003755 ORTHO05D004385 9.1e-28 128.6 309 31.1
MD02G1269300 Malus domestica HOM05D003755 ORTHO05D004385 1.1e-25 121.7 77 74.0
C09p20250 Brassica napus HOM05D003755 ORTHO05D004385 1.7e-21 107.8 75 77.3
QL08p007617 Quercus lobata HOM05D003755 ORTHO05D004385 5.3e-20 102.8 81 59.3
QL10p045362 Quercus lobata HOM05D003755 ORTHO05D004385 4.5e-19 99.8 80 58.8
MD02G1269200 Malus domestica HOM05D003755 ORTHO05D004385 5.0e-18 96.3 85 51.8
BolC9t54930H Brassica oleracea HOM05D003755 ORTHO05D004385 1.1e-17 95.1 57 82.5
BcaB07g31286 Brassica carinata HOM05D003755 ORTHO05D004385 8.8e-15 85.5 74 66.2
EL10As1g23076 Beta vulgaris HOM05D003755 ORTHO05D004385 3.4e-14 83.6 57 71.9
Lsat_1_v5_gn_7_47981 Lactuca sativa HOM05D003755 ORTHO05D004385 9.1e-12 75.5 63 58.7
QL03p066087 Quercus lobata HOM05D003755 ORTHO05D004385 1.3e-10 71.6 49 59.2


User provided reference genes

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