Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10475 Brassica carinata HOM05D004238 ORTHO05D004934 2.4e-45 185.3 104 100.0
BolC5t32601H Brassica oleracea HOM05D004238 ORTHO05D004934 4.3e-10 68.2 40 80.0
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 1.3e-09 66.6 39 79.5
C05p38610 Brassica napus HOM05D004238 ORTHO05D004934 1.3e-09 66.6 39 79.5
Carub.0003s1804 Capsella rubella HOM05D004238 ORTHO05D004934 2.8e-09 65.5 60 60.0
BcaC08g45100 Brassica carinata HOM05D004238 ORTHO05D004934 6.3e-09 64.3 41 75.6
BcaC04g23227 Brassica carinata HOM05D004238 ORTHO05D004934 1.1e-08 63.5 40 77.5
BolC6t37880H Brassica oleracea HOM05D004238 ORTHO05D004934 1.1e-08 63.5 40 77.5
BolC9t53984H Brassica oleracea HOM05D004238 ORTHO05D004934 1.1e-08 63.5 40 77.5
Thhalv10020846m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 1.8e-08 62.8 39 76.9
AL3G31500 Arabidopsis lyrata HOM05D004238 ORTHO05D004934 3.1e-08 62.0 39 74.4
AT3G18270 Arabidopsis thaliana HOM05D004238 ORTHO05D004934 3.1e-08 62.0 39 76.9
BcaC06g36376 Brassica carinata HOM05D004238 ORTHO05D004934 3.1e-08 62.0 40 75.0
C08p35620 Brassica napus HOM05D004238 ORTHO05D004934 3.1e-08 62.0 40 75.0
C05p47680 Brassica napus HOM05D004238 ORTHO05D004934 4.1e-08 61.6 60 56.7
BolC5t33477H Brassica oleracea HOM05D004238 ORTHO05D004934 4.1e-08 61.6 60 56.7
BraA05t21977Z Brassica rapa HOM05D004238 ORTHO05D004934 4.1e-08 61.6 60 56.7
Thhalv10022164m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 5.3e-08 61.2 39 74.4
A05p31380 Brassica napus HOM05D004238 ORTHO05D004934 6.9e-08 60.8 39 74.4
Sp3g16390 Schrenkiella parvula HOM05D004238 ORTHO05D004934 9.1e-08 60.5 87 46.0
Aa31LG8G5120 Aethionema arabicum HOM05D004238 ORTHO05D004934 1.5e-07 59.7 60 55.0
BcaC08g44328 Brassica carinata HOM05D004238 ORTHO05D004934 1.5e-07 59.7 39 71.8
C06p17530 Brassica napus HOM05D004238 ORTHO05D004934 1.5e-07 59.7 39 71.8
THA.LOC104820382 Tarenaya hassleriana HOM05D004238 ORTHO05D004934 2.6e-07 58.9 60 51.7
TAR371G0419 Trochodendron aralioides HOM05D004238 ORTHO05D004934 7.7e-07 57.4 68 44.1
CAN.G1129.11 Capsicum annuum HOM05D004238 ORTHO05D004934 1.0e-06 57.0 68 42.6
COL.COLO4_20838 Corchorus olitorius HOM05D004238 ORTHO05D004934 1.3e-06 56.6 60 48.3
Nitab4.5_0001986g0030 Nicotiana tabacum HOM05D004238 ORTHO05D004934 1.3e-06 56.6 68 44.1
Cc04_g06880 Coffea canephora HOM05D004238 ORTHO05D004934 1.7e-06 56.2 60 48.3
Peaxi162Scf00683g00158 Petunia axillaris HOM05D004238 ORTHO05D004934 1.7e-06 56.2 60 48.3
TAR371G0763 Trochodendron aralioides HOM05D004238 ORTHO05D004934 2.2e-06 55.8 60 48.3
CiPaw.16G088800 Carya illinoinensis HOM05D004238 ORTHO05D004934 2.9e-06 55.5 60 50.0
Duzib084G0471 Durio zibethinus HOM05D004238 ORTHO05D004934 2.9e-06 55.5 60 46.7
Solyc03g119200.4 Solanum lycopersicum HOM05D004238 ORTHO05D004934 2.9e-06 55.5 60 48.3
PGSC0003DMG400005732 Solanum tuberosum HOM05D004238 ORTHO05D004934 2.9e-06 55.5 60 48.3
TWI15G0256 Tripterygium wilfordii HOM05D004238 ORTHO05D004934 2.9e-06 55.5 33 69.7
Dinv12220 Davidia involucrata HOM05D004238 ORTHO05D004934 5.0e-06 54.7 60 46.7
Gohir.A07G066800 Gossypium hirsutum HOM05D004238 ORTHO05D004934 5.0e-06 54.7 38 60.5
Gohir.D07G071400 Gossypium hirsutum HOM05D004238 ORTHO05D004934 5.0e-06 54.7 38 60.5
Gorai.001G075300 Gossypium raimondii HOM05D004238 ORTHO05D004934 5.0e-06 54.7 38 60.5
MD14G1229600 Malus domestica HOM05D004238 ORTHO05D004934 5.0e-06 54.7 60 48.3
Manes.02G071200 Manihot esculenta HOM05D004238 ORTHO05D004934 5.0e-06 54.7 68 42.6
Thecc.03G040700 Theobroma cacao HOM05D004238 ORTHO05D004934 5.0e-06 54.7 60 45.0
TAR426G0005 Trochodendron aralioides HOM05D004238 ORTHO05D004934 5.0e-06 54.7 60 46.7
TAR535G0010 Trochodendron aralioides HOM05D004238 ORTHO05D004934 5.0e-06 54.7 60 46.7
MD06G1220000 Malus domestica HOM05D004238 ORTHO05D004934 8.5e-06 53.9 60 48.3
PSO017G2643 Papaver somniferum HOM05D004238 ORTHO05D004934 8.5e-06 53.9 38 60.5


User provided reference genes

Program Settings