Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10405 Brassica carinata HOM05D008497 ORTHO05D003355 6.6e-63 243.8 119 100.0
C04p29310 Brassica napus HOM05D008497 ORTHO05D003355 6.6e-63 243.8 119 100.0
BolC4t24461H Brassica oleracea HOM05D008497 ORTHO05D003355 5.8e-59 230.7 126 92.1
BraA01t02635Z Brassica rapa HOM05D008497 ORTHO05D003355 1.5e-43 179.5 142 66.9
BcaC06g36075 Brassica carinata HOM05D008497 ORTHO05D003355 2.0e-43 179.1 143 69.2
C07p08170 Brassica napus HOM05D008497 ORTHO05D003355 2.0e-43 179.1 143 69.2
BolC7t41233H Brassica oleracea HOM05D008497 ORTHO05D003355 2.0e-43 179.1 143 69.2
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 1.5e-30 136.3 89 67.4
A09p15560 Brassica napus HOM05D008497 ORTHO05D003355 9.6e-30 133.7 164 45.7
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 9.6e-30 133.7 164 45.7
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 1.3e-29 133.3 89 67.4
C09p18810 Brassica napus HOM05D008497 ORTHO05D003355 3.7e-29 131.7 90 66.7
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 3.7e-29 131.7 90 66.7
Sp2g01280 Schrenkiella parvula HOM05D008497 ORTHO05D027096 2.2e-26 122.5 169 43.2
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 3.7e-21 105.1 170 39.4
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.0e-18 97.1 107 47.7
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 3.6e-16 88.6 119 42.9
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 3.0e-15 85.5 95 46.3
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.5e-14 82.4 86 45.3
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 4.3e-14 81.6 87 43.7
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 5.7e-14 81.3 79 46.8
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 5.7e-14 81.3 96 43.8
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 5.7e-14 81.3 130 36.9
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 5.7e-14 81.3 118 41.5
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 1.3e-13 80.1 78 47.4
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 1.3e-13 80.1 82 47.6
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 1.3e-13 80.1 105 43.8
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 1.3e-13 80.1 78 47.4
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 1.7e-13 79.7 109 41.3
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 1.7e-13 79.7 78 47.4
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 1.7e-13 79.7 99 44.4
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 1.7e-13 79.7 91 44.0
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 1.7e-13 79.7 90 47.8
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 2.2e-13 79.3 78 46.2
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 2.2e-13 79.3 92 44.6
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 2.2e-13 79.3 87 43.7
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 2.2e-13 79.3 87 43.7
AT2G01800 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.8e-13 79.0 84 45.2
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 3.7e-13 78.6 118 39.0
AL1G64360 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 4.8e-13 78.2 83 48.2
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 4.8e-13 78.2 81 45.7
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 6.3e-13 77.8 80 48.8
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 8.2e-13 77.4 76 46.1
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 8.2e-13 77.4 86 40.7
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 8.2e-13 77.4 86 44.2
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 8.2e-13 77.4 78 47.4
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 1.1e-12 77.0 80 43.8
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 1.1e-12 77.0 79 45.6
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 1.1e-12 77.0 79 45.6
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 1.1e-12 77.0 85 42.4
AT2G02770 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.4e-12 76.6 81 48.1
CARHR215860 Cardamine hirsuta HOM05D008497 ORTHO05D003355 1.4e-12 76.6 119 37.8
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 1.4e-12 76.6 107 38.3
AT4G00920 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.8e-12 76.3 92 46.7
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 1.8e-12 76.3 79 46.8
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 1.8e-12 76.3 76 46.1
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 1.8e-12 76.3 99 43.4
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 2.4e-12 75.9 76 44.7
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 3.1e-12 75.5 118 36.4
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 3.1e-12 75.5 80 45.0
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 3.1e-12 75.5 73 45.2
AL1G63810 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 5.3e-12 74.7 91 42.9
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 5.3e-12 74.7 78 44.9
Carub.0001s4470 Capsella rubella HOM05D008497 ORTHO05D003355 6.9e-12 74.3 84 41.7
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 6.9e-12 74.3 82 42.7
AT4G00580 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 9.1e-12 73.9 100 39.0
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 9.1e-12 73.9 84 39.3
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 1.2e-11 73.6 82 40.2
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 1.5e-11 73.2 81 42.0
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 1.5e-11 73.2 87 43.7
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 2.0e-11 72.8 77 49.4
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 2.0e-11 72.8 82 40.2
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 2.0e-11 72.8 73 46.6
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 2.6e-11 72.4 102 38.2
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 2.6e-11 72.4 84 44.0
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 2.6e-11 72.4 86 41.9
Cc11_g16250 Coffea canephora HOM05D012928 ORTHO05D003355 3.4e-11 72.0 74 44.6
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 3.4e-11 72.0 79 41.8
ATR0824G200 Amborella trichopoda HOM05D005863 ORTHO05D003355 4.5e-11 71.6 109 37.6
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 4.5e-11 71.6 76 43.4
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 4.5e-11 71.6 109 38.5
AUR62024201 Chenopodium quinoa HOM05D025851 ORTHO05D044019 5.9e-11 71.2 80 38.8
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 5.9e-11 71.2 86 37.2
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 5.9e-11 71.2 76 46.1
Sp7g04860 Schrenkiella parvula HOM05D008497 ORTHO05D003355 7.7e-11 70.9 90 45.6
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 7.7e-11 70.9 87 39.1
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 1.0e-10 70.5 77 48.1
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 1.3e-10 70.1 77 48.1
HanXRQChr08g0208041 Helianthus annuus HOM05D005863 ORTHO05D003355 1.3e-10 70.1 73 43.8
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 1.3e-10 70.1 76 40.8
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 2.2e-10 69.3 77 42.9
Thhalv10028078m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 5.0e-10 68.2 87 42.5
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 5.0e-10 68.2 76 35.5
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 8.5e-10 67.4 75 45.3
BcaC06g31928 Brassica carinata HOM05D008497 ORTHO05D003355 1.1e-09 67.0 92 45.7
Thhalv10028182m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 1.1e-09 67.0 74 44.6
PSO384G2180 Papaver somniferum HOM05D005863 ORTHO05D003355 1.1e-09 67.0 83 42.2
Aa31LG7G9560 Aethionema arabicum HOM05D008497 ORTHO05D003355 1.9e-09 66.2 62 48.4
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 1.9e-09 66.2 79 39.2
CANSAT01G3281 Cannabis sativa HOM05D005863 ORTHO05D003355 2.5e-09 65.9 85 40.0
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 3.2e-09 65.5 85 34.1
Carub.0003s3440 Capsella rubella HOM05D008497 ORTHO05D003355 4.2e-09 65.1 77 39.0
THA.LOC104808433 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 5.5e-09 64.7 69 44.9
THA.LOC104825537 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 5.5e-09 64.7 69 44.9
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 7.2e-09 64.3 83 37.3
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 1.2e-08 63.5 76 39.5
THA.LOC104825538 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 2.7e-08 62.4 71 40.8
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 4.7e-08 61.6 74 37.8
Gorai.013G152000 Gossypium raimondii HOM05D005863 ORTHO05D003355 4.7e-08 61.6 74 37.8
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 4.7e-08 61.6 81 40.7
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 4.7e-08 61.6 87 35.6
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 4.7e-08 61.6 122 28.7
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 6.1e-08 61.2 73 38.4
Thhalv10027990m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 7.9e-08 60.8 76 42.1
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 7.9e-08 60.8 75 40.0
EL10As2g23204 Beta vulgaris HOM05D025851 ORTHO05D003355 1.0e-07 60.5 80 35.0
RcHm_v2.0_Chr4g0432241 Rosa chinensis HOM05D005863 ORTHO05D017031 1.0e-07 60.5 92 40.2
Aa31sc26G130 Aethionema arabicum HOM05D008497 ORTHO05D003355 1.8e-07 59.7 81 37.0
Ah.03g133620 Amaranthus hybridus HOM05D001489 ORTHO05D001380 3.0e-07 58.9 80 35.0
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 3.0e-07 58.9 76 38.2
PSO339G3984 Papaver somniferum HOM05D005863 ORTHO05D003355 3.9e-07 58.5 87 36.8
Nitab4.5_0001159g0240 Nicotiana tabacum HOM05D005863 ORTHO05D003355 6.7e-07 57.8 73 38.4
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 8.8e-07 57.4 73 41.1
SEGI_35034 Sequoiadendron giganteum HOM05D005863 ORTHO05D003355 8.8e-07 57.4 75 36.0
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 2.0e-06 56.2 76 39.5
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 2.6e-06 55.8 96 31.2
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 3.3e-06 55.5 86 31.4
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 3.3e-06 55.5 74 36.5
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 4.4e-06 55.1 69 40.6
Nn1g07525 Nelumbo nucifera HOM05D005863 ORTHO05D003355 5.7e-06 54.7 101 36.6
THA.LOC104822728 Tarenaya hassleriana HOM05D012516 ORTHO05D003355 5.7e-06 54.7 80 36.2
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 7.4e-06 54.3 76 34.2


User provided reference genes

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